Cp4.1LG17g08190 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g08190
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	30S ribosomal protein 2, chloroplastic-like
Location	Cp4.1LG17: 5395516 .. 5399765 (-)
RNA-Seq Expression	Cp4.1LG17g08190
Synteny	Cp4.1LG17g08190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCACGTGCGGTAAGCACGTGTGTGAACCTTCATGCCGACTGGATAAACCGCTGGGCTCGCTCGCCTCAGGGTTCCGTTCTTGTCGCTTCGGAACACAAAGCTTTACAGACCAAAAATGGCTTCCATCTCTGCCGTATTATCGCCAACGAATCTCATCCACAGTTCCATAAAACCCGCCGAAATCCTTCTCACATCAGTCTCATTTCACCGCCGTCGTACCCATACCTTCCTCCGCCTATCTCCCGGTCGCCCCACGAGACTCTTCGCGGCGCTTACTGCTCAGGATTCCAGTTCAGTGGCGGAAAGGAAATTGTACGTCGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCAAGCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTGCGTAATTTATGATTGATTTTTTTTTCTTCTTATTGTACATTTTGAAATTTGTTGCGTACCCTGCGCGTCGAGATGTTGATGTTGATGTTGAGGTTTGCCTGCTGGATTCTATTATTGAGGACTCGTATCTATCTGCTTGATTAGTTTGTCTTCAACGAATCTTCGCATGAATGTACCCTGATTTTGGCATGAATTGAATTGAGTTAATTGTTTATAAGTTAAGTTCATCAGAACTTCTGCCTGAACGTACCTTGATTTTGGGCCAAATTTGGCCACCATTTAGTTTCAAAATGGGGTTTACTTGCAGTGTCTTATCAAATCCACGAGGGAATTAAAGATGGAAAAAGTTCATAGGAGAGGGAAGGAATAGTTCATTGGAGGGGAAAGGATAGTTATGCTCTGTTAGTTACAATAAGCTGCAGCCATTTATCAAAAGGAAGAAGGATGTACAGGACGATTTTAGGGGAAAGGAGAATCGAATCCTGTGAAATGCTCACCACGGGCTCATAGAAATTCCATAGGACGTTAAAACTTAATTTTTGCTGCTTTCGGGTTTATCGCTTCAGTGTTGTTGTGTTTGTACGAGAGTATCTAAGATGAGTACCAAACAGTCCCTGAAATGAAGTAGCTCATGACATGTCTTTAATGATGTATTTCTTGCAATCAATTTACTTGAAGAATTCTAGCATCTTCTTGTTCTTAATCTTTACTTGCTAACTGTTGGTATTGTCTTTAAAACTCCAATTTTGTTCCATTTCCAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACGGTTGACGACGCAAATGCAGCAATTGAGAAACTGAATGAGACGGTAAGCTAAATACCTATCAAGTGCAACAAAAATCGAAAAAGAACAAGAACAAAACTATCGTTTCTTACTGTTCACTAGAATCTAGATAGATGAATTGTGCTGACTCTATCGGTCTAATGACAGGACGTTGGGGGACGTACAATTAAAGTCAATATAACCGAAAAACCTGTGGTAAATACGGTTGATATGTCACTTCTTGAGGCAGAGGAATCCCAATTCATCGACAGTCCCCACAAAGTATATGTAGGAAACATTTCGAGTACTGTCTCTACTGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACATCGAAAGCAAGTGGCTACGGTTTTGTTACCTTTTCTTCCGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTGTAAGTAACTCGCTTCCAGTCTTTATCACGTCGAACGTTTTGACACCAATACTGATTTATGCAAACTCTACCTCATTTTCTGGTCGGGTTTCATGCATTGGCAACATTTTTTCTCACATTGTCTAGTAGAGCATACCTTGTTTCATTTTCTGTTTCCCTGAACAATTACATATAGAGTAGCATTCTGATCACCCACTTGTAAGAAGCATTTCTAAACCTAGTCGATTGGTATGCCAACTCGAACAACTTACATTGATCATCGATATTACTAATAGTTGGACAAGCTATGTTCATCAAAGATGATGGCATACTTCCCTGAAAACTCTCATGCACATTTCTCGTTTCCGAACGGGTGGAAGAAGCTTGTGTCTGATATGTGTTTTCTTTGCTGCAGTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAGTTTTGTAGGATTCTTTGTAACAAAAGGTATGCAAATTTCGCTTTTTACCTCTTGGCATGAATTAATGAACAGCAGAGGTCAGATTTTTCTCTCAATTTCTCTGTATTGATCATTAATGTATAATCTTGTTTATTTTTCTGTTTAAGATTTGACTATTTGCAAATCTTTACTTGTTCCTCAAATTCCACGTTTGACTGTTCAACTATTTGCAGTCCTCATGTGCACTATAAATACATCATCTTCTCAAAGGAATTACTCATTTCTCAAATTCTCAGTTCCTTCTGCTTTGGTTTCTCAAAACCCAGAAAACAATGATTCTCTCTCTTCTCTCAGCTTTCATAGATTGCTTCCTTCCTTCTCTCTCCCCAAAGGCTTCCCATGGCGGAAGATCATGTAAACCCCAAACTCAAACAACAGCCTCCAAACTGACACCTGAAGCTGATTCGCAGCTCCCTCAAGCTCCTATAATCGTGTCTCATTTCCCAGTTTCTGCAAATTTATCTTGCTTGTGATTTCCTTGATGAACTCTGGTCTTCAATGGAAACCTCTTGGATCGAATCTGAAAAGGATGAAGTTTTGTCTTTGATCATGTTGTCTCTCGAGTTCAGTCATGGGTGTTTGTAGAACTAGTTTCTTTCTTGTTCCATCTCTGGTTTTGATTCTTTTTTTCCTTTTTGGAGATTAATATACAACGTTTTTCTTGTAATTTCTTGGTTTCTTCGATGGGTATTGACTTTTCTATCTCATGTCTGTAATGGGTCTTAATTAAAATGTTAGAATACTCCAAATAGCCTTTTATATTTACTACTTTTTTTAGGATGGGTCTTTTAGTAGCATAAGGTCAAAGACACTTGAAATAATTGCTCTGAAGTCTATAATTTTCAAACAAAATGTTAAAAATATTGATATAAGATTAAATTTATCAGCTCACTTTTTTGAGCTAATAGATGATTTAATATAAATATTATAGTAAGAGGTCATATGTCTAAACTCCTATAATGCCATTCATTTATAATTATAACTGCTCAAGCCCACCGTTAGCAGATATTGTCCAGAGCCCTTAAGAGGGTGGATACAATGATATTATTAGAGTTAGACACCGGGCGGTGTATTAATGAGGACACTGAGCCTCGGAAGGAGGTGGACATCAGGTAATGTGATGGTGAGAACACTGGGTCCCAAAGGGGTGGACACTGGGTGGTGTGTCAACAAGGACATTGGACCACGAAGAGGGTGGATTGTGAGATCCCATATTGAAACATTGTTTATAAGGGTGTAGAATGGATTATGAGATCCCATATTGGTTGGAGAAGGAAATGAAACTCACAATCCCATATTGGTTGTGTGGAAATCTCTCCTTAAGCAAACACGTTTTAAAAACTTTTGAAAAGAAACCTCTAAAGGGTGTTGGCTCTTGCATGTTGAAGGAAGTTAAGATAGTTCCTTTGGAGGAAAGTGGAACAATAAAGGTTGTTGAAGAAAATGAAGCAGATGATAATGCATACATGGAGGAATCATCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGACAGTATTGACCGAAGAGGGCGACTCGAGTAAAAAATGCAAGGTTGTGGAGCAGATAAGACTTTTACTCAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTCCTGAAGCACTCATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGCCGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGGTATGTACTGTTTATCTAAGCCTACGTTCGAAAACGAAAGTACATTTTGGCCATAACGTAGACTGAATAGTGGCAAATCTGGCATCTTACATGATAGTTGTGTGCATGTTTCATATTTCTGTCAAGAAAATCATGATGAAAGAGATAGCATATCATGAATTGATTGTAACTCGATTGATGGTTTTGACCTAAAGTCTATCATATATTCTGAAACATATGGTTAGATTAGGGTCAGAATAACATTTCGACTTCATATAAACCCCAATCTCGGAAAGAGACTCTGTCTTTGTCGATCTCTCTCGCTCGAGGAGGGAATAAAATGTATGTTTGTTCTCTTATCTAAATTCTG

mRNA sequence

TGGCACGTGCGGTAAGCACGTGTGTGAACCTTCATGCCGACTGGATAAACCGCTGGGCTCGCTCGCCTCAGGGTTCCGTTCTTGTCGCTTCGGAACACAAAGCTTTACAGACCAAAAATGGCTTCCATCTCTGCCGTATTATCGCCAACGAATCTCATCCACAGTTCCATAAAACCCGCCGAAATCCTTCTCACATCAGTCTCATTTCACCGCCGTCGTACCCATACCTTCCTCCGCCTATCTCCCGGTCGCCCCACGAGACTCTTCGCGGCGCTTACTGCTCAGGATTCCAGTTCAGTGGCGGAAAGGAAATTGTACGTCGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCAAGCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACGGTTGACGACGCAAATGCAGCAATTGAGAAACTGAATGAGACGGACGTTGGGGGACGTACAATTAAAGTCAATATAACCGAAAAACCTGTGGTAAATACGGTTGATATGTCACTTCTTGAGGCAGAGGAATCCCAATTCATCGACAGTCCCCACAAAGTATATGTAGGAAACATTTCGAGTACTGTCTCTACTGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACATCGAAAGCAAGTGGCTACGGTTTTGTTACCTTTTCTTCCGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAGTTTTGTAGGATTCTTTGTAACAAAAGCTTTCATAGATTGCTTCCTTCCTTCTCTCTCCCCAAAGGCTTCCCATGGCGGAAGATCATGTAAACCCCAAACTCAAACAACAGCCTCCAAACTGACACCTGAAGCTGATTCGCAGCTCCCTCAAGCTCCTATAATCGTGTCTCATTTCCCAGTTTCTGCAAATTTATCTTGCTTGTGATTTCCTTGATGAACTCTGGTCTTCAATGGAAACCTCTTGGATCGAATCTGAAAAGGATGAAGTTTTGTCTTTGATCATGTTGTCTCTCGAGTTCAGTCATGGGTGTTTGTAGAACTAGTTTCTTTCTTGTTCCATCTCTGGTTTTGATTCTTTTTTTCCTTTTTGGAGATTAATATACAACGTTTTTCTTGTAATTTCTTGGTTTCTTCGATGGGTATTGACTTTTCTATCTCATGTCTGTAATGGGTCTTAATTAAAATGTTAGAATACTCCAAATAGCCTTTTATATTTACTACTTTTTTTAGGATGGGTCTTTTAGTAGCATAAGGTCAAAGACACTTGAAATAATTGCTCTGAAGTCTATAATTTTCAAACAAAATGTTAAAAATATTGATATAAGATTAAATTTATCAGCTCACTTTTTTGAGCTAATAGATGATTTAATATAAATATTATAGTAAGAGGTCATATGTCTAAACTCCTATAATGCCATTCATTTATAATTATAACTGCTCAAGCCCACCGTTAGCAGATATTGTCCAGAGCCCTTAAGAGGGTGGATACAATGATATTATTAGAGTTAGACACCGGGCGGTGTATTAATGAGGACACTGAGCCTCGGAAGGAGGTGGACATCAGGTAATGTGATGGTGAGAACACTGGGTCCCAAAGGGGTGGACACTGGGTGGTGTGTCAACAAGGACATTGGACCACGAAGAGGGTGGATTGTGAGATCCCATATTGAAACATTGTTTATAAGGGTGTAGAATGGATTATGAGATCCCATATTGGTTGGAGAAGGAAATGAAACTCACAATCCCATATTGGTTGTGTGGAAATCTCTCCTTAAGCAAACACGTTTTAAAAACTTTTGAAAAGAAACCTCTAAAGGGTGTTGGCTCTTGCATGTTGAAGGAAGTTAAGATAGTTCCTTTGGAGGAAAGTGGAACAATAAAGGTTGTTGAAGAAAATGAAGCAGATGATAATGCATACATGGAGGAATCATCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGACAGTATTGACCGAAGAGGGCGACTCGAGTAAAAAATGCAAGGTTGTGGAGCAGATAAGACTTTTACTCAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTCCTGAAGCACTCATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGCCGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGGTATGTACTGTTTATCTAAGCCTACGTTCGAAAACGAAAGTACATTTTGGCCATAACGTAGACTGAATAGTGGCAAATCTGGCATCTTACATGATAGTTGTGTGCATGTTTCATATTTCTGTCAAGAAAATCATGATGAAAGAGATAGCATATCATGAATTGATTGTAACTCGATTGATGGTTTTGACCTAAAGTCTATCATATATTCTGAAACATATGGTTAGATTAGGGTCAGAATAACATTTCGACTTCATATAAACCCCAATCTCGGAAAGAGACTCTGTCTTTGTCGATCTCTCTCGCTCGAGGAGGGAATAAAATGTATGTTTGTTCTCTTATCTAAATTCTG

Coding sequence (CDS)

ATGGCTTCCATCTCTGCCGTATTATCGCCAACGAATCTCATCCACAGTTCCATAAAACCCGCCGAAATCCTTCTCACATCAGTCTCATTTCACCGCCGTCGTACCCATACCTTCCTCCGCCTATCTCCCGGTCGCCCCACGAGACTCTTCGCGGCGCTTACTGCTCAGGATTCCAGTTCAGTGGCGGAAAGGAAATTGTACGTCGGGAATATACCTAGAAATGTGGATAATGAGGAGCTCAAGCGGATTGTTGAAGAACATGGGGCTGTGGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACGGTTGACGACGCAAATGCAGCAATTGAGAAACTGAATGAGACGGACGTTGGGGGACGTACAATTAAAGTCAATATAACCGAAAAACCTGTGGTAAATACGGTTGATATGTCACTTCTTGAGGCAGAGGAATCCCAATTCATCGACAGTCCCCACAAAGTATATGTAGGAAACATTTCGAGTACTGTCTCTACTGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCCGGTACATCGAAAGCAAGTGGCTACGGTTTTGTTACCTTTTCTTCCGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAG

Protein sequence

MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA

Homology

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BLAST of Cp4.1LG17g08190 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 7.0e-69
Identity = 130/187 (69.52%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 55  AQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKT 114
           A D SS A R++Y+GNIPR V NE+L ++VEEHGAVEK +VMYDKYSGRSRRF F TMK+
Sbjct: 67  ALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126

Query: 115 VDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISS 174
           V+DANA +EKLN   V GR IKVNITEKP+ ++ D+S+L++E+S F+DSP+KVYVGN++ 
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186

Query: 175 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQ 234
           TV+ E L+N FSEKGKV+SAKVSRVPGTSK++G+GFVTFSSEE+VEAAI + NN+LLEGQ
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246

Query: 235 PIRVNKA 242
            IRVNKA
Sbjct: 247 KIRVNKA 253

[Close]

BLAST of Cp4.1LG17g08190 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.6e-68
Identity = 129/191 (67.54%), Postives = 163/191 (85.34%), Query Frame = 0


Query: 51  AALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFV 110
           ++  +  S     R+LYVGNIPRN++N+EL+ IVEEHGA+E AEVMYDKYSGRSRRF FV
Sbjct: 71  SSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFV 130

Query: 111 TMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVG 170
           TMKTV+DANA IEKLN+T++GGR IKVNITEKP +  +D++  +AE+SQF++SP+KVY+G
Sbjct: 131 TMKTVEDANAVIEKLNDTEIGGRKIKVNITEKP-LEGMDIATTQAEDSQFVESPYKVYIG 190

Query: 171 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNAL 230
           N++ TV+ E LK+FFSEKGKVL AKV R PGTSK++G+GFV+FSSEEEVEAAI + NN++
Sbjct: 191 NLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSV 250

Query: 231 LEGQPIRVNKA 242
           LEGQ IRVNKA
Sbjct: 251 LEGQKIRVNKA 260

[Close]

BLAST of Cp4.1LG17g08190 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 8.9e-32
Identity = 71/185 (38.38%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 59  SSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDA 118
           +S  E +LYVGN+P  + + EL +I  E G V   +++YDK + RSR F FVTM ++++A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170

Query: 119 NAAIEKLNETDVGGRTIKVNITEKP--VVNTVDMSLLEAEESQFIDSPHKVYVGNISSTV 178
             A++  N + +GGRT+KVN  E P    N V  + +      ++DSPHKVY GN+   +
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNL 230

Query: 179 STETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPI 238
           +++ LK+ F ++  VL AKV     T ++ G+GF++F S E V++A+++ N   +EG+ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290

Query: 239 RVNKA 242
           R+N A
Sbjct: 291 RLNLA 295

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BLAST of Cp4.1LG17g08190 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-31
Identity = 74/187 (39.57%), Postives = 119/187 (63.64%), Query Frame = 0


Query: 57  DSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 116
           +S SV   +LYVGN+P ++ + +L  I  E G V   E++YD+ + RSR FAFVTM +V+
Sbjct: 107 ESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVE 166

Query: 117 DANAAIEKLNETDVGGRTIKVNITEKP--VVNTVDMSLLEAEESQFIDSPHKVYVGNISS 176
           +A  AI   + + VGGRT+KVN  E P      V  + + +    F+DSPHK+YV N+S 
Sbjct: 167 EAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226

Query: 177 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQ 236
            ++++ L++ F+++   +SAKV     + ++ G+GF+TFSS E + +A+ + N   LEG+
Sbjct: 227 ALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGR 286

Query: 237 PIRVNKA 242
           P+R+N A
Sbjct: 287 PLRLNVA 293

[Close]

BLAST of Cp4.1LG17g08190 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-28
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 56  QDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 115
           ++ S  A+ KL+VGN+P NVD+ +L ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 116 DDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQF--------------I 175
            +  AA ++ N  ++ GR ++VN    P       S      S F               
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS--RGPRSSFGSSGSGYGGGGGSGA 202

Query: 176 DSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEA 235
            S ++VYVGN+S  V    L++ FSE+GKV+ A+V     + ++ G+GFVT+ S +EV+ 
Sbjct: 203 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 262

Query: 236 AISSFNNALLEGQPIRVNKA 242
           AI S + A L+G+ IRV++A
Sbjct: 263 AIKSLDGADLDGRQIRVSEA 280

[Close]

BLAST of Cp4.1LG17g08190 vs. NCBI nr
Match: XP_023513630.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456 bits (1174), Expect = 1.65e-161
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK
Sbjct: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240

[Close]

BLAST of Cp4.1LG17g08190 vs. NCBI nr
Match: XP_022959724.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 449 bits (1154), Expect = 1.85e-158
Identity = 237/241 (98.34%), Postives = 238/241 (98.76%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSS KPAEILL SVSFHRRRTHT LRLSPGRPTRLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRRTHTLLRLSPGRPTRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEELKRIVE+HGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK
Sbjct: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240

[Close]

BLAST of Cp4.1LG17g08190 vs. NCBI nr
Match: KAG7025672.1 (30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 447 bits (1149), Expect = 1.07e-157
Identity = 236/241 (97.93%), Postives = 237/241 (98.34%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSS KPAEILL SVSFHRR THT LRLSPGRPTRLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEELKRIVE+HGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK
Sbjct: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240

[Close]

BLAST of Cp4.1LG17g08190 vs. NCBI nr
Match: KAG6593325.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 442 bits (1136), Expect = 2.19e-155
Identity = 233/238 (97.90%), Postives = 234/238 (98.32%), Query Frame = 0


Query: 4   ISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSSVAE 63
           ISAVLSPTNLIHSS KPAEILL SVSFHRR THT LRLSPGRPTRLFAALTAQDSSSVAE
Sbjct: 25  ISAVLSPTNLIHSSTKPAEILLKSVSFHRRHTHTLLRLSPGRPTRLFAALTAQDSSSVAE 84

Query: 64  RKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIE 123
           RKLYVGNIPRNVDNEELKRIVE+HGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIE
Sbjct: 85  RKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIE 144

Query: 124 KLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKN 183
           KLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKN
Sbjct: 145 KLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTETLKN 204

Query: 184 FFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 241
           FFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA
Sbjct: 205 FFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 262

[Close]

BLAST of Cp4.1LG17g08190 vs. NCBI nr
Match: XP_023004641.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 438 bits (1127), Expect = 2.41e-154
Identity = 232/241 (96.27%), Postives = 234/241 (97.10%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSS KPAEILL SVSFHRRRTHT LRLSPGRP+RLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRRTHTLLRLSPGRPSRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEEL RIVE+HGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVN VDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNMVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEK KVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNN LLEGQPIRVNK
Sbjct: 181 LKNFFSEKDKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNVLLEGQPIRVNK 240

[Close]

BLAST of Cp4.1LG17g08190 vs. ExPASy TrEMBL
Match: A0A6J1H8X7 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460708 PE=4 SV=1)

HSP 1 Score: 449 bits (1154), Expect = 8.94e-159
Identity = 237/241 (98.34%), Postives = 238/241 (98.76%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSS KPAEILL SVSFHRRRTHT LRLSPGRPTRLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRRTHTLLRLSPGRPTRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEELKRIVE+HGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK
Sbjct: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240

[Close]

BLAST of Cp4.1LG17g08190 vs. ExPASy TrEMBL
Match: A0A6J1KSN9 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111497873 PE=4 SV=1)

HSP 1 Score: 438 bits (1127), Expect = 1.17e-154
Identity = 232/241 (96.27%), Postives = 234/241 (97.10%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSIKPAEILLTSVSFHRRRTHTFLRLSPGRPTRLFAALTAQDSSS 60
           MASISAVLSPTNLIHSS KPAEILL SVSFHRRRTHT LRLSPGRP+RLFAALTAQDSSS
Sbjct: 1   MASISAVLSPTNLIHSSTKPAEILLKSVSFHRRRTHTLLRLSPGRPSRLFAALTAQDSSS 60

Query: 61  VAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120
           VAERKLYVGNIPRNVDNEEL RIVE+HGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA
Sbjct: 61  VAERKLYVGNIPRNVDNEELTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANA 120

Query: 121 AIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180
           AIEKLNETDVGGRTIKVNITEKPVVN VDMSLLEAEESQFIDSPHKVYVGNISSTVSTET
Sbjct: 121 AIEKLNETDVGGRTIKVNITEKPVVNMVDMSLLEAEESQFIDSPHKVYVGNISSTVSTET 180

Query: 181 LKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 240
           LKNFFSEK KVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNN LLEGQPIRVNK
Sbjct: 181 LKNFFSEKDKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNVLLEGQPIRVNK 240

[Close]

BLAST of Cp4.1LG17g08190 vs. ExPASy TrEMBL
Match: A0A6J1JXN0 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488418 PE=4 SV=1)

HSP 1 Score: 379 bits (972), Expect = 8.48e-131
Identity = 209/259 (80.69%), Postives = 225/259 (86.87%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSIKPAEI-------LLTSVSFHRRRTHTFLRLSPG-------RP 60
           MASIS++L+P NLIHSSIKP EI        L  +SFH R  +T LR+SPG       R 
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPR--YTLLRVSPGLQTSAGKRR 60

Query: 61  TRLFA----ALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSG 120
           TRLFA    A++ QD SSVA RKLY+GNIPRNV NEEL RIVEEHGAVEKAEVMYDKYSG
Sbjct: 61  TRLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSG 120

Query: 121 RSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFID 180
           RSRRFAFVTMKTVDDANA IEKLN+T+VGGRTIKVNITEKP+VNTVDMSLL+A+ESQFID
Sbjct: 121 RSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFID 180

Query: 181 SPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAA 240
           SP+KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEVEAA
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

[Close]

BLAST of Cp4.1LG17g08190 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 379 bits (972), Expect = 8.48e-131
Identity = 209/259 (80.69%), Postives = 225/259 (86.87%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSIKPAEI-------LLTSVSFHRRRTHTFLRLSPG-------RP 60
           MASIS++L+P NLIHSSIKP EI        L  +SFH R  +T LR+SPG       R 
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPR--YTLLRVSPGLQTSAGKRR 60

Query: 61  TRLFA----ALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSG 120
           TRLFA    A++ QD SSVA RKLY+GNIPRNV NEEL RIVEEHGAVEKAEVMYDKYSG
Sbjct: 61  TRLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSG 120

Query: 121 RSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFID 180
           RSRRFAFVTMKTVDDANA IEKLN+T+VGGRTIKVNITEKP+VNTVDMSLL+A+ESQFID
Sbjct: 121 RSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFID 180

Query: 181 SPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAA 240
           SP+KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEVEAA
Sbjct: 181 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 240

[Close]

BLAST of Cp4.1LG17g08190 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 379 bits (972), Expect = 1.84e-130
Identity = 209/259 (80.69%), Postives = 225/259 (86.87%), Query Frame = 0


Query: 1   MASISAVLSPTNLIHSSIKPAEI-------LLTSVSFHRRRTHTFLRLSPG-------RP 60
           MASIS++L+P NLIHSSIKP EI        L  +SFH R  +T LR+SPG       R 
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPR--YTLLRVSPGLQTSAGKRR 82

Query: 61  TRLFA----ALTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSG 120
           TRLFA    A++ QD SSVA RKLY+GNIPRNV NEEL RIVEEHGAVEKAEVMYDKYSG
Sbjct: 83  TRLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSG 142

Query: 121 RSRRFAFVTMKTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFID 180
           RSRRFAFVTMKTVDDANA IEKLN+T+VGGRTIKVNITEKP+VNTVDMSLL+A+ESQFID
Sbjct: 143 RSRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFID 202

Query: 181 SPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAA 240
           SP+KVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEVEAA
Sbjct: 203 SPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAA 262

[Close]

BLAST of Cp4.1LG17g08190 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 261.9 bits (668), Expect = 5.0e-70
Identity = 130/187 (69.52%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 55  AQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKT 114
           A D SS A R++Y+GNIPR V NE+L ++VEEHGAVEK +VMYDKYSGRSRRF F TMK+
Sbjct: 67  ALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126

Query: 115 VDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISS 174
           V+DANA +EKLN   V GR IKVNITEKP+ ++ D+S+L++E+S F+DSP+KVYVGN++ 
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186

Query: 175 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQ 234
           TV+ E L+N FSEKGKV+SAKVSRVPGTSK++G+GFVTFSSEE+VEAAI + NN+LLEGQ
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246

Query: 235 PIRVNKA 242
            IRVNKA
Sbjct: 247 KIRVNKA 253

[Close]

BLAST of Cp4.1LG17g08190 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 261.9 bits (668), Expect = 5.0e-70
Identity = 130/187 (69.52%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 55  AQDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKT 114
           A D SS A R++Y+GNIPR V NE+L ++VEEHGAVEK +VMYDKYSGRSRRF F TMK+
Sbjct: 67  ALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126

Query: 115 VDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISS 174
           V+DANA +EKLN   V GR IKVNITEKP+ ++ D+S+L++E+S F+DSP+KVYVGN++ 
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186

Query: 175 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQ 234
           TV+ E L+N FSEKGKV+SAKVSRVPGTSK++G+GFVTFSSEE+VEAAI + NN+LLEGQ
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246

Query: 235 PIRVNKA 242
            IRVNKA
Sbjct: 247 KIRVNKA 253

[Close]

BLAST of Cp4.1LG17g08190 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 138.7 bits (348), Expect = 6.3e-33
Identity = 71/185 (38.38%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 59  SSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDA 118
           +S  E +LYVGN+P  + + EL +I  E G V   +++YDK + RSR F FVTM ++++A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170

Query: 119 NAAIEKLNETDVGGRTIKVNITEKP--VVNTVDMSLLEAEESQFIDSPHKVYVGNISSTV 178
             A++  N + +GGRT+KVN  E P    N V  + +      ++DSPHKVY GN+   +
Sbjct: 171 KEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNL 230

Query: 179 STETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPI 238
           +++ LK+ F ++  VL AKV     T ++ G+GF++F S E V++A+++ N   +EG+ +
Sbjct: 231 TSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290

Query: 239 RVNKA 242
           R+N A
Sbjct: 291 RLNLA 295

[Close]

BLAST of Cp4.1LG17g08190 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 135.6 bits (340), Expect = 5.4e-32
Identity = 76/185 (41.08%), Postives = 114/185 (61.62%), Query Frame = 0


Query: 57  DSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVD 116
           D  +    KLY GN+P NVD+  L +I+++    E  EV+Y++ +G+SR FAFVTM  V+
Sbjct: 78  DPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 137

Query: 117 DANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNISSTV 176
           D N  I+ L+ T+  GR +KVN  +KP  N         +E  + ++ HK++VGN+S TV
Sbjct: 138 DCNIIIDNLDGTEYLGRALKVNFADKPKPN---------KEPLYPETEHKLFVGNLSWTV 197

Query: 177 STETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLEGQPI 236
           ++E+L   F E G V+ A+V     T ++ GYGFV +SS+ E+E A+ S +   LEG+ I
Sbjct: 198 TSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAI 253

Query: 237 RVNKA 242
           RVN A
Sbjct: 258 RVNLA 253

[Close]

BLAST of Cp4.1LG17g08190 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.3e-29
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 56  QDSSSVAERKLYVGNIPRNVDNEELKRIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTV 115
           ++ S  A+ KL+VGN+P NVD+ +L ++ E  G VE  EV+YDK +GRSR F FVTM +V
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142

Query: 116 DDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQF--------------I 175
            +  AA ++ N  ++ GR ++VN    P       S      S F               
Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS--RGPRSSFGSSGSGYGGGGGSGA 202

Query: 176 DSPHKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEA 235
            S ++VYVGN+S  V    L++ FSE+GKV+ A+V     + ++ G+GFVT+ S +EV+ 
Sbjct: 203 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 262

Query: 236 AISSFNNALLEGQPIRVNKA 242
           AI S + A L+G+ IRV++A
Sbjct: 263 AIKSLDGADLDGRQIRVSEA 280

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g08190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYM4	7.0e-69	69.52	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
P82277	1.6e-68	67.54	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q39061	8.9e-32	38.38	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	1.2e-31	39.57	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q9ZUU4	4.6e-28	38.50	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]

BLAST of Cp4.1LG17g08190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513630.1	1.65e-161	100.00	30S ribosomal protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959724.1	1.85e-158	98.34	30S ribosomal protein 2, chloroplastic-like [Cucurbita moschata]	[more]
KAG7025672.1	1.07e-157	97.93	30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosper...	[more]
KAG6593325.1	2.19e-155	97.90	30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023004641.1	2.41e-154	96.27	30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG17g08190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8X7	8.94e-159	98.34	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KSN9	1.17e-154	96.27	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1JXN0	8.48e-131	80.69	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GSN8	8.48e-131	80.69	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	1.84e-130	80.69	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]

BLAST of Cp4.1LG17g08190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	5.0e-70	69.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	5.0e-70	69.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	6.3e-33	38.38	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	5.4e-32	41.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	3.3e-29	38.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 166..239 e-value: 5.9E-22 score: 88.9 coord: 65..138 e-value: 6.4E-27 score: 105.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 167..237 e-value: 6.0E-17 score: 61.3 coord: 66..136 e-value: 2.1E-20 score: 72.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 165..241 score: 18.188618
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 64..142 score: 18.683224
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 65..138 e-value: 0.92 score: 14.5 coord: 166..239 e-value: 0.11 score: 21.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..147 e-value: 3.0E-27 score: 97.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 152..241 e-value: 3.1E-23 score: 84.1
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 28..241
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 28..241
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 65..142 e-value: 4.65117E-35 score: 118.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 160..241
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 54..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g08190.1	Cp4.1LG17g08190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding