Cp4.1LG17g08160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGGCCGAGCAGCGCCGCCTCCGCCACTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTTCTACTTCAACTGA ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGGCCGAGCAGCGCCGCCTCCGCCACTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTTCTACTTCAACTGA ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGGCCGAGCAGCGCCGCCTCCGCCACTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTTCTACTTCAACTGA MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAFYFN Homology
BLAST of Cp4.1LG17g08160 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2) HSP 1 Score: 70.1 bits (170), Expect = 1.0e-11 Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 105 bits (263), Expect = 2.54e-28 Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. NCBI nr
Match: XP_022960230.1 (arabinogalactan peptide 23-like [Cucurbita moschata]) HSP 1 Score: 104 bits (260), Expect = 7.28e-28 Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima]) HSP 1 Score: 104 bits (260), Expect = 7.28e-28 Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. NCBI nr
Match: XP_022933008.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 104 bits (259), Expect = 1.03e-27 Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. NCBI nr
Match: XP_023528634.1 (arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 95.1 bits (235), Expect = 4.76e-24 Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1) HSP 1 Score: 104 bits (260), Expect = 3.52e-28 Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1) HSP 1 Score: 104 bits (260), Expect = 3.52e-28 Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1) HSP 1 Score: 104 bits (259), Expect = 5.01e-28 Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 4.48e-22 Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.10e-17 Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 ) HSP 1 Score: 70.1 bits (170), Expect = 7.3e-13 Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0
BLAST of Cp4.1LG17g08160 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 9.8e-10 Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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