Cp4.1LG17g08160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g08160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionarabinogalactan peptide 23-like
LocationCp4.1LG17: 5445440 .. 5445631 (-)
RNA-Seq ExpressionCp4.1LG17g08160
SyntenyCp4.1LG17g08160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGGCCGAGCAGCGCCGCCTCCGCCACTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTTCTACTTCAACTGA

mRNA sequence

ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGGCCGAGCAGCGCCGCCTCCGCCACTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTTCTACTTCAACTGA

Coding sequence (CDS)

ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGGCCGAGCAGCGCCGCCTCCGCCACTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTTCTACTTCAACTGA

Protein sequence

MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAFYFN
Homology
BLAST of Cp4.1LG17g08160 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-11
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMKKIAC  LFAAA++TAV+A++E  +P  APGP+SAASA LPALGSLVGASLVS  ++
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 YFN 64
          Y +
Sbjct: 61 YLH 61

BLAST of Cp4.1LG17g08160 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (263), Expect = 2.54e-28
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVSFVAF
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 YFN 63
          YFN
Sbjct: 61 YFN 63

BLAST of Cp4.1LG17g08160 vs. NCBI nr
Match: XP_022960230.1 (arabinogalactan peptide 23-like [Cucurbita moschata])

HSP 1 Score: 104 bits (260), Expect = 7.28e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMKKIACAALFAAAT+TAVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVSFVAF
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 YFN 63
          YFN
Sbjct: 61 YFN 63

BLAST of Cp4.1LG17g08160 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 104 bits (260), Expect = 7.28e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 YFN 63
          YFN
Sbjct: 61 YFN 63

BLAST of Cp4.1LG17g08160 vs. NCBI nr
Match: XP_022933008.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104 bits (259), Expect = 1.03e-27
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVS VA+
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 YFN 63
          YFN
Sbjct: 61 YFN 63

BLAST of Cp4.1LG17g08160 vs. NCBI nr
Match: XP_023528634.1 (arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 4.76e-24
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMK IACAALFAAA VTAVVASDESLSPAAAPGPSSAASA LPALGSL+GASLVSFVA+
Sbjct: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 YFN 63
            N
Sbjct: 61 VLN 63

BLAST of Cp4.1LG17g08160 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 3.52e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 YFN 63
          YFN
Sbjct: 61 YFN 63

BLAST of Cp4.1LG17g08160 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 3.52e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMKKIACAALFAAAT+TAVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVSFVAF
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 YFN 63
          YFN
Sbjct: 61 YFN 63

BLAST of Cp4.1LG17g08160 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 5.01e-28
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVS VA+
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 YFN 63
          YFN
Sbjct: 61 YFN 63

BLAST of Cp4.1LG17g08160 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.48e-22
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMK IAC ALF AA VTAVVASDES SPAAAPGPSSAASA LPALGSL+GASLVSFVA+
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 YFN 63
            N
Sbjct: 61 VLN 63

BLAST of Cp4.1LG17g08160 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.10e-17
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMKKIACAALFAAA V+A VA+DES+SPAAAPGPSSAASA LP LG    AS+VSFVA 
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLG----ASVVSFVAA 58

Query: 61 YF 62
          YF
Sbjct: 61 YF 58

BLAST of Cp4.1LG17g08160 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 70.1 bits (170), Expect = 7.3e-13
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSFVAF 60
          MEMKKIAC  LFAAA++TAV+A++E  +P  APGP+SAASA LPALGSLVGASLVS  ++
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 YFN 64
          Y +
Sbjct: 61 YLH 61

BLAST of Cp4.1LG17g08160 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 9.8e-10
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGP-SSAASATLPALGSLVGASLVSFVA 60
          MEMKKIAC  +FAAA++TAV+A++     A APGP +S AS  +PALGSLVGASLVS  A
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 FYFN 64
          +Y N
Sbjct: 61 YYLN 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8S2W41.0e-1168.25Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
KAG7025661.12.54e-2898.41Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022960230.17.28e-2896.83arabinogalactan peptide 23-like [Cucurbita moschata][more]
XP_023004714.17.28e-2896.83arabinogalactan peptide 23-like [Cucurbita maxima][more]
XP_022933008.11.03e-2796.83arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalact... [more]
XP_023528634.14.76e-2488.89arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1KX423.52e-2896.83arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4... [more]
A0A6J1H8I13.52e-2896.83arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE... [more]
A0A6J1F3F55.01e-2896.83arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE... [more]
A0A6J1IYE94.48e-2284.13arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4... [more]
A0A1S3CDX51.10e-1779.03arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G57690.17.3e-1368.25arabinogalactan protein 23 [more]
AT2G41905.19.8e-1062.50BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 1..62
NoneNo IPR availablePANTHERPTHR34672:SF2ARABINOGALACTAN PROTEIN 23coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g08160.1Cp4.1LG17g08160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane