Cp4.1LG17g07660 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g07660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein NIM1-INTERACTING 1
Location	Cp4.1LG17: 5777453 .. 5777827 (+)
RNA-Seq Expression	Cp4.1LG17g07660
Synteny	Cp4.1LG17g07660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGCAGAGCTTGAAGCCGACGGGGAAGAGAGTCGCCGTCGCCGCCGTAGACGGAGAGGAGGAGGAGGAGGAGATGAAGATGGAGGCGTTCTTTGCTCTGGTGAGGAATTTCAAGGAAATGCGAGATCAGCGGAGGAAGGAGTTGATGATCGGCTGCGACGGCGAGAAAGCGGCAGCGGCGGAGATGAGGAAGAGGAAGATGAAGACGGTGGAGAATCGGTCGGCGTGGATTCCGAGGTTTGAAAGAGAGGATTTCGATGAGGAGTTTCAGCTGAGAGGTCCGGCGAAGGAAGAGGCGGCGGCGGCGGCGAAGAAGAAGAAGAAAGTAAAGAACGAAGAGGATATTTTGGATCTTAATCTGTCTCTGTAG

mRNA sequence

ATGGAAAAGCAGAGCTTGAAGCCGACGGGGAAGAGAGTCGCCGTCGCCGCCGTAGACGGAGAGGAGGAGGAGGAGGAGATGAAGATGGAGGCGTTCTTTGCTCTGGTGAGGAATTTCAAGGAAATGCGAGATCAGCGGAGGAAGGAGTTGATGATCGGCTGCGACGGCGAGAAAGCGGCAGCGGCGGAGATGAGGAAGAGGAAGATGAAGACGGTGGAGAATCGGTCGGCGTGGATTCCGAGGTTTGAAAGAGAGGATTTCGATGAGGAGTTTCAGCTGAGAGGTCCGGCGAAGGAAGAGGCGGCGGCGGCGGCGAAGAAGAAGAAGAAAGTAAAGAACGAAGAGGATATTTTGGATCTTAATCTGTCTCTGTAG

Coding sequence (CDS)

ATGGAAAAGCAGAGCTTGAAGCCGACGGGGAAGAGAGTCGCCGTCGCCGCCGTAGACGGAGAGGAGGAGGAGGAGGAGATGAAGATGGAGGCGTTCTTTGCTCTGGTGAGGAATTTCAAGGAAATGCGAGATCAGCGGAGGAAGGAGTTGATGATCGGCTGCGACGGCGAGAAAGCGGCAGCGGCGGAGATGAGGAAGAGGAAGATGAAGACGGTGGAGAATCGGTCGGCGTGGATTCCGAGGTTTGAAAGAGAGGATTTCGATGAGGAGTTTCAGCTGAGAGGTCCGGCGAAGGAAGAGGCGGCGGCGGCGGCGAAGAAGAAGAAGAAAGTAAAGAACGAAGAGGATATTTTGGATCTTAATCTGTCTCTGTAG

Protein sequence

MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAAAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAAAAKKKKKVKNEEDILDLNLSL

Homology

[Close]

BLAST of Cp4.1LG17g07660 vs. ExPASy Swiss-Prot
Match: Q9FNZ5 (Protein NIM1-INTERACTING 1 OS=Arabidopsis thaliana OX=3702 GN=NIMIN-1 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.9e-04
Identity = 40/122 (32.79%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 12  RVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAAAAEMRKRKMKT 71
           RV     + EEEEEE K++ FF L+++++E R +RR+EL        A  + + +RK   
Sbjct: 29  RVDKRVREDEEEEEEKKIDTFFKLIKHYQEARKRRREEL--------AENSGVVRRKSNG 88

Query: 72  VENRSAWIPRFEREDFDE-EFQLRGPA------KEEAAAAAKKKKKV--KNEEDILDLNL 125
            E     +P F+ EDF +    L+ P       KEE     +++ +   +NE+  LDLNL
Sbjct: 89  GERSGIVVPAFQPEDFSQCRTGLKPPLMFVSDHKEENTKVEQEEDQTEERNEDKALDLNL 142

[Close]

BLAST of Cp4.1LG17g07660 vs. NCBI nr
Match: XP_023514605.1 (protein NIM1-INTERACTING 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228 bits (581), Expect = 6.14e-75
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAA 60
           MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAA
Sbjct: 1   MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAA 60

Query: 61  AAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAAAAKKKKKVKNEEDILDL 120
           AAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAAAAKKKKKVKNEEDILDL
Sbjct: 61  AAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAAAAKKKKKVKNEEDILDL 120

Query: 121 NLSL 124
           NLSL
Sbjct: 121 NLSL 124

[Close]

BLAST of Cp4.1LG17g07660 vs. NCBI nr
Match: KAG7025612.1 (hypothetical protein SDJN02_12109, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209 bits (532), Expect = 2.14e-67
Identity = 120/129 (93.02%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MEKQSLKPTGKRVAVAAVDGEEEEEE-MKMEAFFALVRNFKEMRDQRRKELMIGCDGEKA 60
           MEKQSLK TGKRVA AAVDGEEEEEE MKMEAFFALVRNFKEMRDQRRKELMIGC+GEKA
Sbjct: 1   MEKQSLKTTGKRVASAAVDGEEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCNGEKA 60

Query: 61  AAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAAAA----KKKKKVKNEE 120
           AAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQ+RGPAKEEAAAAA    KKKKKVKNEE
Sbjct: 61  AAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAAAAIATAKKKKKVKNEE 120

Query: 121 DILDLNLSL 124
           DILDLNLSL
Sbjct: 121 DILDLNLSL 129

[Close]

BLAST of Cp4.1LG17g07660 vs. NCBI nr
Match: KAG6593261.1 (hypothetical protein SDJN03_12737, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207 bits (528), Expect = 8.18e-67
Identity = 119/128 (92.97%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAA 60
           MEKQSLK TGKRVA AAVDGEEEEE MKMEAFFALVRNFKEMRDQRRKELMIGC+GEKAA
Sbjct: 1   MEKQSLKTTGKRVASAAVDGEEEEE-MKMEAFFALVRNFKEMRDQRRKELMIGCNGEKAA 60

Query: 61  AAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAAAA----KKKKKVKNEED 120
           AAEMRKRKMKTVENRSAWIPRFEREDFDEEFQ+RGPAKEEAAAAA    KKKKKVKNEED
Sbjct: 61  AAEMRKRKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAAAAIVTAKKKKKVKNEED 120

Query: 121 ILDLNLSL 124
           ILDLNLSL
Sbjct: 121 ILDLNLSL 127

[Close]

BLAST of Cp4.1LG17g07660 vs. NCBI nr
Match: XP_022960173.1 (protein NIM1-INTERACTING 1 [Cucurbita moschata])

HSP 1 Score: 204 bits (520), Expect = 1.55e-65
Identity = 120/132 (90.91%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MEKQSLKPTGKRVA----VAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDG 60
           MEKQSLK TGKRVA     AAVDGEEEEE MKMEAFFALVRNFKEMRDQRRKELMIGCDG
Sbjct: 1   MEKQSLKTTGKRVASAAAAAAVDGEEEEE-MKMEAFFALVRNFKEMRDQRRKELMIGCDG 60

Query: 61  EKAAAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAAAA----KKKKKVK 120
           EKAAAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQ+RGPAKEEAAAAA    KKKKKVK
Sbjct: 61  EKAAAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAAAAIATAKKKKKVK 120

Query: 121 NEEDILDLNLSL 124
           NEEDILDLNLSL
Sbjct: 121 NEEDILDLNLSL 131

[Close]

BLAST of Cp4.1LG17g07660 vs. NCBI nr
Match: XP_023004697.1 (protein NIM1-INTERACTING 1 [Cucurbita maxima])

HSP 1 Score: 198 bits (503), Expect = 4.65e-63
Identity = 114/125 (91.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MEKQSLKPTGKRVAVAAVDGEEE-EEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKA 60
           MEKQSLK TGKRVA A VD EEE EEEMKMEAFF LVRNFKEMRDQRRKELMI CDGEKA
Sbjct: 1   MEKQSLKTTGKRVAAATVDREEEKEEEMKMEAFFDLVRNFKEMRDQRRKELMIVCDGEKA 60

Query: 61  AAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAAAAKKKKKVKNEEDILD 120
           AAAEMRK+KMKTVENRSAWIPRFEREDFDEEFQ+RGPAKEEAAAA  KKKKVKNEEDILD
Sbjct: 61  AAAEMRKKKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAAA--KKKKVKNEEDILD 120

Query: 121 LNLSL 124
           LNLSL
Sbjct: 121 LNLSL 123

[Close]

BLAST of Cp4.1LG17g07660 vs. ExPASy TrEMBL
Match: A0A6J1H831 (protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV=1)

HSP 1 Score: 204 bits (520), Expect = 7.48e-66
Identity = 120/132 (90.91%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MEKQSLKPTGKRVA----VAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDG 60
           MEKQSLK TGKRVA     AAVDGEEEEE MKMEAFFALVRNFKEMRDQRRKELMIGCDG
Sbjct: 1   MEKQSLKTTGKRVASAAAAAAVDGEEEEE-MKMEAFFALVRNFKEMRDQRRKELMIGCDG 60

Query: 61  EKAAAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAAAA----KKKKKVK 120
           EKAAAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQ+RGPAKEEAAAAA    KKKKKVK
Sbjct: 61  EKAAAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAAAAIATAKKKKKVK 120

Query: 121 NEEDILDLNLSL 124
           NEEDILDLNLSL
Sbjct: 121 NEEDILDLNLSL 131

[Close]

BLAST of Cp4.1LG17g07660 vs. ExPASy TrEMBL
Match: A0A6J1KR57 (protein NIM1-INTERACTING 1 OS=Cucurbita maxima OX=3661 GN=LOC111497915 PE=3 SV=1)

HSP 1 Score: 198 bits (503), Expect = 2.25e-63
Identity = 114/125 (91.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MEKQSLKPTGKRVAVAAVDGEEE-EEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKA 60
           MEKQSLK TGKRVA A VD EEE EEEMKMEAFF LVRNFKEMRDQRRKELMI CDGEKA
Sbjct: 1   MEKQSLKTTGKRVAAATVDREEEKEEEMKMEAFFDLVRNFKEMRDQRRKELMIVCDGEKA 60

Query: 61  AAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPAKEEAAAAAKKKKKVKNEEDILD 120
           AAAEMRK+KMKTVENRSAWIPRFEREDFDEEFQ+RGPAKEEAAAA  KKKKVKNEEDILD
Sbjct: 61  AAAEMRKKKMKTVENRSAWIPRFEREDFDEEFQVRGPAKEEAAAA--KKKKVKNEEDILD 120

Query: 121 LNLSL 124
           LNLSL
Sbjct: 121 LNLSL 123

[Close]

BLAST of Cp4.1LG17g07660 vs. ExPASy TrEMBL
Match: A0A6J1DAZ5 (protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 SV=1)

HSP 1 Score: 103 bits (258), Expect = 4.57e-26
Identity = 74/141 (52.48%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 1   MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKEL--MIGCDGEK 60
           ME ++L+P            EEEEEEMKMEAFFAL+RNFKEMRD+RRKEL  MIG  GE 
Sbjct: 1   MENENLRPAA---------AEEEEEEMKMEAFFALLRNFKEMRDRRRKELTTMIGDGGE- 60

Query: 61  AAAAEMRKRKMKTVENRSAWIPRFEREDFDEEFQLRGPA----------KEEAA-----A 120
               E +++KMKT    S WIP F REDFDE+FQ+RGP           KE+       A
Sbjct: 61  ---TEKKRKKMKTAP--STWIPTFLREDFDEDFQVRGPPPVLPKPCNLIKEDTPPPPLPA 120

Query: 121 AAKKKKKVKNEEDILDLNLSL 124
           A  KKK +KN+E+ LDLNL+L
Sbjct: 121 AVAKKKNMKNDEECLDLNLAL 126

[Close]

BLAST of Cp4.1LG17g07660 vs. ExPASy TrEMBL
Match: A0A6J1JVD5 (uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.13e-23
Identity = 70/139 (50.36%), Postives = 93/139 (66.91%), Query Frame = 0


Query: 1   MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAA 60
           ME Q  +P  + +A      EEEEEE++ME F+ALVRNFKE+RD+ RKE++ G +G++ A
Sbjct: 1   MENQKRQPPRETIA------EEEEEEVEMEKFYALVRNFKEIRDRWRKEVVNG-EGDETA 60

Query: 61  AAEMRKRKM--KTVENRSAWIPRFEREDFDEEFQLRGPA----------KEE---AAAAA 120
           A + RKR    +TV+N+S+WI RFEREDFDE+ Q+ G A          KE+   AAA  
Sbjct: 61  AEKTRKRMKTTETVQNQSSWILRFEREDFDEDLQVGGAAVELPKHCCLVKEDTPVAAAPL 120

Query: 121 KKKKKVKNEEDILDLNLSL 124
           KK+KKV +  D LDLNLSL
Sbjct: 121 KKEKKVASGVDCLDLNLSL 132

[Close]

BLAST of Cp4.1LG17g07660 vs. ExPASy TrEMBL
Match: A0A0A0K5V7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.35e-21
Identity = 69/145 (47.59%), Postives = 86/145 (59.31%), Query Frame = 0


Query: 1   MEKQSLKPTGKRVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDG--EK 60
           ME   L+P+    A  +++ EE      ME FFALVR+ KEMRDQRRKEL IG +   E+
Sbjct: 1   MENGKLQPSPDTTAEDSLEDEE------MERFFALVRSLKEMRDQRRKELNIGQEEGEEE 60

Query: 61  AAAAEMRKRKMKT---VENRSAWIPRFEREDFDEEFQLRGP---------AKEEAAAAA- 120
            AA E R+++M+    VENRS WIP+FEREDFDEEFQ              K +  AA+ 
Sbjct: 61  IAAGEKRRKRMRAAEMVENRSTWIPKFEREDFDEEFQALSTLPPNPCCNLVKRDTTAAST 120

Query: 121 ------KKKKKVKNEEDILDLNLSL 124
                 K KKKVKN +  LDLNL+L
Sbjct: 121 TTTAPMKNKKKVKNGDVSLDLNLAL 139

[Close]

BLAST of Cp4.1LG17g07660 vs. TAIR 10
Match: AT1G02450.1 (NIM1-interacting 1 )

HSP 1 Score: 45.1 bits (105), Expect = 4.9e-05
Identity = 40/122 (32.79%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 12  RVAVAAVDGEEEEEEMKMEAFFALVRNFKEMRDQRRKELMIGCDGEKAAAAEMRKRKMKT 71
           RV     + EEEEEE K++ FF L+++++E R +RR+EL        A  + + +RK   
Sbjct: 29  RVDKRVREDEEEEEEKKIDTFFKLIKHYQEARKRRREEL--------AENSGVVRRKSNG 88

Query: 72  VENRSAWIPRFEREDFDE-EFQLRGPA------KEEAAAAAKKKKKV--KNEEDILDLNL 125
            E     +P F+ EDF +    L+ P       KEE     +++ +   +NE+  LDLNL
Sbjct: 89  GERSGIVVPAFQPEDFSQCRTGLKPPLMFVSDHKEENTKVEQEEDQTEERNEDKALDLNL 142

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g07660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNZ5	6.9e-04	32.79	Protein NIM1-INTERACTING 1 OS=Arabidopsis thaliana OX=3702 GN=NIMIN-1 PE=1 SV=1	[more]

BLAST of Cp4.1LG17g07660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514605.1	6.14e-75	100.00	protein NIM1-INTERACTING 1 [Cucurbita pepo subsp. pepo]	[more]
KAG7025612.1	2.14e-67	93.02	hypothetical protein SDJN02_12109, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6593261.1	8.18e-67	92.97	hypothetical protein SDJN03_12737, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960173.1	1.55e-65	90.91	protein NIM1-INTERACTING 1 [Cucurbita moschata]	[more]
XP_023004697.1	4.65e-63	91.20	protein NIM1-INTERACTING 1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG17g07660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H831	7.48e-66	90.91	protein NIM1-INTERACTING 1 OS=Cucurbita moschata OX=3662 GN=LOC111460992 PE=3 SV...	[more]
A0A6J1KR57	2.25e-63	91.20	protein NIM1-INTERACTING 1 OS=Cucurbita maxima OX=3661 GN=LOC111497915 PE=3 SV=1	[more]
A0A6J1DAZ5	4.57e-26	52.48	protein NIM1-INTERACTING 1 OS=Momordica charantia OX=3673 GN=LOC111019022 PE=3 S...	[more]
A0A6J1JVD5	8.13e-23	50.36	uncharacterized protein LOC111488189 OS=Cucurbita maxima OX=3661 GN=LOC111488189...	[more]
A0A0A0K5V7	6.35e-21	47.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414420 PE=3 SV=1	[more]

BLAST of Cp4.1LG17g07660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02450.1	4.9e-05	32.79	NIM1-interacting 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 21..115 e-value: 4.7E-18 score: 65.8
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	PROTEIN NEGATIVE REGULATOR OF RESISTANCE	coord: 11..124
None	No IPR available	PANTHER	PTHR33669:SF1	NPR1/NH1-INTERACTING PROTEIN-RELATED	coord: 11..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g07660.1	Cp4.1LG17g07660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
cellular_component	GO:0005634	nucleus