Cp4.1LG17g07480 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g07480
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	beta-carotene isomerase D27, chloroplastic
Location	Cp4.1LG17: 5900950 .. 5904007 (-)
RNA-Seq Expression	Cp4.1LG17g07480
Synteny	Cp4.1LG17g07480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTATAGTTTAGTTAGTTATCAAAGGAATATTTATCTAATTGCCCTCGCAAAATTGGGATATTCGTTCTAAAAGCCCAAAACAGTGAAGCGTTTCGGTTGTGTGTGGAAAGTGAAAATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACATCTCCTGCTTCGCTGTTCAATCTGAATCGGTAGGGTTTCAATCTTCCCCTCGCCGTTTTTGAATTCAATCGACTTTTTCTTATCTTCATTGTATTTGAATCAATCCATAGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGTTGTTTAATTTCACACTTCACTTTCGTTGTTATCACCAATCGAGTTTCTGAGAAAGCAAGTAGTTGAAGTTAATTCTTTAATGTGTGTTTTGACTGCAGGAAGTCGGCTGGGATTCTGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTATTTCTTTTTTAAGAACAATTTGTAGATACAGAACAGAACATCTAAGTTTTTTGTACTCCTTGAACATTTGATTGTAGCTGAAATTGTAATCGCGAGTTAGGTTCGTAGATTTCATTATGGAAATTTGGTTATGGCTGCAGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGCAAAGTGGCTGCGATTATGGTCGGTGAGTTGAGCCCTTCAATCTTTATCTGTATCTAGAATTTGGATATTGTTCCTTTTTATTTGGGAATCAATTACTTTTCATTTGTTTGACTTTGATCCATCTGGTGTAAGATTTTGAAGATTAGTTGAACTGTTCTTCTCTTTTTTTCTTTTTCCTCTGTGTTGAAAGCAAGGGTGACTGCGTTTACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTATGAATTATTGATTACCATGTTCATGAATTTCCGTGGGAGTTGCTGAGATTTTGGATTTTTTAAACATCAATTCAATATTTAAAGCTTACTGATGCAGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGGTTTGTTCTTGCCAACCTATATATATCAAGCTCTTTCTTTACATTACTGGTAATTTGGGAACGTCTTGTTCGTTCGAGTCTCTTGATTCTGCACACACTATTCATTTGACTTGACTCGAACAAATCTCGACAACCTTGATTGTGATGTAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGGTAATTCTATCACTTAACATTTCTGTTCCACTGTTGGGTAGCTTTGTGGGTAGAACGGATAAGTCCTATTACATGATATTGTTTGTATCGATCTCCTGGAATGTTTGGATCCAAAGTATTGTGACTTGATTGAAATGAAGTTACTGAATTTAGTGTGATTCTCCTTTTAACCTTGACGAACACTGCTATTGACATCTAGACTCTAGTTCTATGAAGATATCATTAGCCAGATTCCCAATTGAATTGAATCAAATAAATCCATAGTTTGGAAATGGTTTTGGGATTAGTGTATGGGACGTGTAGTGTGTTGAAGATTGTTAGGAGGGAGTCCCACGTTGGCTAATTTAAAGAATGATTATGAGTTTATAAGTAAGGAATACATCTACATTAGCATGAGGCCTTTTGGAGAAGCCCAAAGCAAAGCCATGACAGCTTAGGCTCAAAGTAGGACAATATCGTCCCATTGTTATGCTCAAAGTGGATTGTTAAGGTGAGGCTGTTCGAGGGCTACATAGACCTCAGGGAGGATTGTTCGGAGGGAGTCCCACATTGACTAATTTAGGAAATGATCATAGGTTCATAAGTAAGGAATACATCTCCCCTTTAGACTCTAGCTCTATGAAGATGTCATTAGCCACTTATTGAATTGAACCAAATAAATCCATAGTTTGGAAATGCTTTTGGCTTTTGGGACTAGTGTATGGAACTTGTTGTGGCTGTCACTTTCTGTAATTTTGATCAAAGGGCGGTTTAACTTAGCAGAATTGGGAGTGAAATATGCATCCTAGCGTCAACCACAATAGTTTGATTTGTCCATTTTAAGTATAAGCTCTTGTGGCTTTGCTTTTGGTTTTGGTTTCCCCAAAAAGGCCTTGTACCAACGAAAATGTATTCCTGATTTGTCCATTTTAAGTATAAGCTCTTGTGGCTTTGCTTTTGGTTTTGGTTTCCCCAAAAGGCCTTGTACCAACGAAAATGTATTCCTTACTTATAAACTCACGATCACCCCTTAATTAGTCGATGTGAGACTCCTCTCCCAACAATCTTCGCACAACCCACCTGTTTAATGATACCCATATCAGCACCTTGTATGAATCTAATCAACTTCACTTTCCTTTTTTTTCTTCCTTGTGGGGCAACCGAATGTCAAAGTTCAAATTTGGTGTTCTTCCTCCTCTGCCTGAAGAAGACAGCATACTGAAAGAGCCTTGCTTGGAGATATGTCCTCATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAGACCGAGCAGCCTATGACGAGCTTGGGATGGTGCTGAATGAGCTGGGATTGCTTGCTAACCGATTGCCTTCCACATCTCTGAATTTTCTTGTACTAAAAAAAAAAAAAAAATTATGAGTTTATTTATTTGAAGGCTTCAAATAATCTCCAAACTTTTGAAAAGTTTATAAACTTTTTCAATTTTATGTCACTAAACTTTAAAAAAATAGTTAATAATAGGTTCTTAAACTCTCAATTTTATGTC

mRNA sequence

AGTTATAGTTTAGTTAGTTATCAAAGGAATATTTATCTAATTGCCCTCGCAAAATTGGGATATTCGTTCTAAAAGCCCAAAACAGTGAAGCGTTTCGGTTGTGTGTGGAAAGTGAAAATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACATCTCCTGCTTCGCTGTTCAATCTGAATCGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTCGGCTGGGATTCTGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGCAAAGTGGCTGCGATTATGGTCGCAAGGGTGACTGCGTTTACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGTTCAAATTTGGTGTTCTTCCTCCTCTGCCTGAAGAAGACAGCATACTGAAAGAGCCTTGCTTGGAGATATGTCCTCATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAGACCGAGCAGCCTATGACGAGCTTGGGATGGTGCTGAATGAGCTGGGATTGCTTGCTAACCGATTGCCTTCCACATCTCTGAATTTTCTTGTACTAAAAAAAAAAAAAAAATTATGAGTTTATTTATTTGAAGGCTTCAAATAATCTCCAAACTTTTGAAAAGTTTATAAACTTTTTCAATTTTATGTCACTAAACTTTAAAAAAATAGTTAATAATAGGTTCTTAAACTCTCAATTTTATGTC

Coding sequence (CDS)

ATGAAGCCAGTGGCTCTTCTTCTTCATCCTCCAGCCACCATCTCTTCAGCTGCTCTTCGTTTCTCCTCCAAATCCCACCTTCGAAAGCGTCCCTTAAACATCTCCTGCTTCGCTGTTCAATCTGAATCGACAAAGGTTGAAGTATCTTCAAAGCCCGAATACAAGCCTGGAATGCTCGACGATTTCTTCCTCAACCTCTTCCGAAGCAAAATGGTTCAGGAAGTCGGCTGGGATTCTGAAAAACCTGGATATGATGGACTAATCGAAGTCGCTAACAGGCTCACGATGAAGGGCAAATCCAATTCCGATACCATAGAAGCGTCGGTTCGAATTTTAATAGCTTTGTTTCCTCCTCTTCTATTGGAACTTTATCGGATGCTGGTATCACCTATAGCTGGTGGCAAAGTGGCTGCGATTATGGTCGCAAGGGTGACTGCGTTTACTTGTCAATGGCTAATGGGAACTTGTACTGTAAATTCAATTGAATTACCTGATGGATCGTCTTGCCAAAGTGGGGTTTTCGTTGAAAAATGCAAGTACTTAGAAGAAAGTAAATGCATAGGAATTTGTCTCAACACTTGCAAGTTTCCTACTCAGAGCTTCTTCAAGAACCAGATGGGAATTCCTCTATTAATGGAGCCAAACTTCAATGACTATAGTTGTCAGTTCAAATTTGGTGTTCTTCCTCCTCTGCCTGAAGAAGACAGCATACTGAAAGAGCCTTGCTTGGAGATATGTCCTCATGCCACAAGAAGAAGAGAAGTTTTGAGTAAGATGAGTGCAACGCAGTGCCCTAAAGCATAG

Protein sequence

MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCLEICPHATRRREVLSKMSATQCPKA

Homology

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BLAST of Cp4.1LG17g07480 vs. ExPASy Swiss-Prot
Match: Q7XA78 (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D27 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-28
Identity = 79/243 (32.51%), Postives = 126/243 (51.85%), Query Frame = 0


Query: 13  TISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNL---FRS 72
           T S    R S    L  +P+         E+ ++E S+       + D FF  +   + S
Sbjct: 22  TRSGLDRRSSISPTLCSKPVYSGKLKAAKETARIETSNTK--NASIEDSFFSKIAINYLS 81

Query: 73  KMVQE---VGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIAL---FPPLLLEL 132
           K +Q+   +   S+   YD L++ A R++     N DT +    +L +L    P ++  L
Sbjct: 82  KNLQDAAGISSSSKSTDYDRLVDTATRVS----RNFDTKQQHEFVLSSLDRALPTVISSL 141

Query: 133 YRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEE 192
            +M   P    KV+  + A  T  +  WL+G   V   E+ +G   +S V++EKC++LE+
Sbjct: 142 IKMAFPP---SKVSRELFALFTTISFAWLVGPSEVRETEV-NGRKEKSVVYIEKCRFLEQ 201

Query: 193 SKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCL 247
           S C+G+C + CK P+Q F KN +G+P+ MEP+FND SC+  FG  PP  E+D  +K+PC 
Sbjct: 202 SNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCF 254

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BLAST of Cp4.1LG17g07480 vs. ExPASy Swiss-Prot
Match: R4HZ96 (Beta-carotene isomerase D27, chloroplastic OS=Medicago truncatula OX=3880 GN=D27 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-26
Identity = 72/214 (33.64%), Postives = 108/214 (50.47%), Query Frame = 0


Query: 54  YKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILI 113
           YK    D   +N     +    G  + K G+D L+E A   + K     +T +    IL 
Sbjct: 53  YKDNWFDKLAINHLSKSVQAATGISNNKSGFDSLVEAATVASQK----FNTTQQQGIILD 112

Query: 114 AL---FPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQ 173
           AL   FP  +L + R ++ P    K+A    A  T     WL+G   V   E+ +G   +
Sbjct: 113 ALDRAFPKPILSVIRRVMPP---SKLAREYFAVFTTIFFAWLLGPSEVRESEI-NGRREK 172

Query: 174 SGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPP 233
           + V ++KC++LEE+ C+G+C+N CK P+Q F K+  G+P+ M PNF+D SC+  FG  PP
Sbjct: 173 NIVHIKKCRFLEETNCVGMCINLCKMPSQLFIKDSFGMPVNMVPNFDDMSCEMIFGQEPP 232

Query: 234 LPEEDSILKEPCLEICPHATRRREVLSKMSATQC 265
              +D  LK+PC ++C           K  ATQC
Sbjct: 233 ASTDDPALKQPCYKLCK--------AKKNHATQC 250

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BLAST of Cp4.1LG17g07480 vs. ExPASy Swiss-Prot
Match: C7AU21 (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=D27 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.8e-23
Identity = 62/211 (29.38%), Postives = 105/211 (49.76%), Query Frame = 0


Query: 38  AVQSESTKVEVSSKPE---YKPGMLDDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVA--- 97
           A    + + E ++ P    Y+    D   +      + +  G  +EK GY+ LI+ A   
Sbjct: 61  AAMMSTVQTETAAAPPATVYRDSWFDKLAIGYLSRNLQEASGLKNEKDGYESLIDAALAI 120

Query: 98  NRLTMKGKSNSDTIEASVRILIALFPPLLLELYRMLVSPIAGGKVAAIMVARVTAFTCQW 157
           +R+    K +    +A  R L    P  +L + ++++ P    + +    A  T     W
Sbjct: 121 SRIFSLDKQSEIVTQALERAL----PSYILTMIKVMMPP---SRFSREYFAAFTTIFFPW 180

Query: 158 LMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESKCIGICLNTCKFPTQSFFKNQMGIPLL 217
           L+G C V   E+ +G   ++ V++ KC++LE + C+G+C N CK P Q F ++ +G+ + 
Sbjct: 181 LVGPCEVMESEV-EGRKEKNVVYIPKCRFLESTNCVGMCTNLCKIPCQKFIQDSLGMKVY 240

Query: 218 MEPNFNDYSCQFKFGVLPPLPEEDSILKEPC 243
           M PNF D SC+  FG  P  PE+D  LK+PC
Sbjct: 241 MSPNFEDMSCEMIFGQQP--PEDDPALKQPC 261

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BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match: XP_023514967.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 537 bits (1383), Expect = 1.68e-192
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD 60
           MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD
Sbjct: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD 60

Query: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120
           DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL
Sbjct: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120

Query: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180
           LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY
Sbjct: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180

Query: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240
           LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE
Sbjct: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240

Query: 241 PCLEICPHATRRREVLSKMSATQCPKA 267
           PCLEICPHATRRREVLSKMSATQCPKA
Sbjct: 241 PCLEICPHATRRREVLSKMSATQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match: XP_022959652.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita moschata])

HSP 1 Score: 531 bits (1369), Expect = 2.29e-190
Identity = 264/267 (98.88%), Postives = 266/267 (99.63%), Query Frame = 0


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD 60
           MKPV LLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD
Sbjct: 1   MKPVVLLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD 60

Query: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120
           DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL
Sbjct: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120

Query: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180
           LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY
Sbjct: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180

Query: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240
           LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE
Sbjct: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240

Query: 241 PCLEICPHATRRREVLSKMSATQCPKA 267
           PCLEICP+ATRRREVL+KMSATQCPKA
Sbjct: 241 PCLEICPNATRRREVLNKMSATQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match: XP_023004624.1 (beta-carotene isomerase D27, chloroplastic [Cucurbita maxima])

HSP 1 Score: 526 bits (1356), Expect = 2.20e-188
Identity = 262/267 (98.13%), Postives = 264/267 (98.88%), Query Frame = 0


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD 60
           MKPVALLLHPPATISSAALRFSSKSHLRKRPLN SCFAVQSESTKVEVSSKP+YKPGMLD
Sbjct: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNFSCFAVQSESTKVEVSSKPDYKPGMLD 60

Query: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120
           DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL
Sbjct: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120

Query: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180
           LELYRMLVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY
Sbjct: 121 LELYRMLVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180

Query: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240
           LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGV PPLPEEDSILKE
Sbjct: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVPPPLPEEDSILKE 240

Query: 241 PCLEICPHATRRREVLSKMSATQCPKA 267
           PCLEICP+ATRRREVLSKMSATQCPKA
Sbjct: 241 PCLEICPNATRRREVLSKMSATQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match: KAG6593243.1 (Beta-carotene isomerase D27, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 526 bits (1354), Expect = 4.44e-188
Identity = 261/267 (97.75%), Postives = 264/267 (98.88%), Query Frame = 0


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD 60
           MKPVALLLHPPATI SAALRFSSKSHLR RPL+ SCFAVQSESTKVEVSSKPEYKPGMLD
Sbjct: 1   MKPVALLLHPPATIPSAALRFSSKSHLRNRPLSFSCFAVQSESTKVEVSSKPEYKPGMLD 60

Query: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120
           DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL
Sbjct: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120

Query: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180
           LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY
Sbjct: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180

Query: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240
           LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE
Sbjct: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240

Query: 241 PCLEICPHATRRREVLSKMSATQCPKA 267
           PCLEICP+ATRRREVL+KMSATQCPKA
Sbjct: 241 PCLEICPNATRRREVLNKMSATQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480 vs. NCBI nr
Match: KAG7025594.1 (Beta-carotene isomerase D27, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 522 bits (1345), Expect = 1.05e-186
Identity = 259/267 (97.00%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD 60
           MKPVALLLHPPATI SAALR SSKSHLR RPL+ SCFAVQSESTKVEVSSKPEYKPGMLD
Sbjct: 1   MKPVALLLHPPATIPSAALRLSSKSHLRNRPLSFSCFAVQSESTKVEVSSKPEYKPGMLD 60

Query: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120
           DFFLNLFRSKMVQEVGWDS+KPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL
Sbjct: 61  DFFLNLFRSKMVQEVGWDSDKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120

Query: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180
           LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY
Sbjct: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180

Query: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240
           LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE
Sbjct: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240

Query: 241 PCLEICPHATRRREVLSKMSATQCPKA 267
           PCLEICP+ATRRREVL+KMSATQCPKA
Sbjct: 241 PCLEICPNATRRREVLNKMSATQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480 vs. ExPASy TrEMBL
Match: A0A6J1H551 (beta-carotene isomerase D27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111460668 PE=4 SV=1)

HSP 1 Score: 531 bits (1369), Expect = 1.11e-190
Identity = 264/267 (98.88%), Postives = 266/267 (99.63%), Query Frame = 0


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD 60
           MKPV LLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD
Sbjct: 1   MKPVVLLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD 60

Query: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120
           DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL
Sbjct: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120

Query: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180
           LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY
Sbjct: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180

Query: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240
           LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE
Sbjct: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240

Query: 241 PCLEICPHATRRREVLSKMSATQCPKA 267
           PCLEICP+ATRRREVL+KMSATQCPKA
Sbjct: 241 PCLEICPNATRRREVLNKMSATQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480 vs. ExPASy TrEMBL
Match: A0A6J1KWU1 (beta-carotene isomerase D27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497865 PE=4 SV=1)

HSP 1 Score: 526 bits (1356), Expect = 1.07e-188
Identity = 262/267 (98.13%), Postives = 264/267 (98.88%), Query Frame = 0


Query: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLD 60
           MKPVALLLHPPATISSAALRFSSKSHLRKRPLN SCFAVQSESTKVEVSSKP+YKPGMLD
Sbjct: 1   MKPVALLLHPPATISSAALRFSSKSHLRKRPLNFSCFAVQSESTKVEVSSKPDYKPGMLD 60

Query: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120
           DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL
Sbjct: 61  DFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLL 120

Query: 121 LELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180
           LELYRMLVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY
Sbjct: 121 LELYRMLVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKY 180

Query: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKE 240
           LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGV PPLPEEDSILKE
Sbjct: 181 LEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVPPPLPEEDSILKE 240

Query: 241 PCLEICPHATRRREVLSKMSATQCPKA 267
           PCLEICP+ATRRREVLSKMSATQCPKA
Sbjct: 241 PCLEICPNATRRREVLSKMSATQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480 vs. ExPASy TrEMBL
Match: A0A0A0K9J2 (DUF4033 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G407750 PE=4 SV=1)

HSP 1 Score: 463 bits (1191), Expect = 1.50e-163
Identity = 234/268 (87.31%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 1   MKPVALLLHPPATISSAALRF-SSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGML 60
           MKPVALLLHPP TIS A LRF SSKSHLR RP  +SC A+QS S K   SSK EYKPG+L
Sbjct: 1   MKPVALLLHPP-TISPAPLRFTSSKSHLRNRPFILSCSALQSGSIKDGASSKAEYKPGIL 60

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFLN+FRSKMVQEVGWDSEKPGYDGLIEVA+RLTM GK+NS+TIEASVRILIALFPPL
Sbjct: 61  DDFFLNVFRSKMVQEVGWDSEKPGYDGLIEVASRLTMTGKTNSETIEASVRILIALFPPL 120

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LYR+LVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK
Sbjct: 121 LLKLYRILVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKCIGIC+NTCK PTQSFFK+QMGIPLLMEPNF DYSCQFKFGVLPPLPEEDSILK
Sbjct: 181 YLEESKCIGICINTCKLPTQSFFKDQMGIPLLMEPNFTDYSCQFKFGVLPPLPEEDSILK 240

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 267
           EPCLEICP+ATRRREV  K+SA QCPKA
Sbjct: 241 EPCLEICPNATRRREVSGKISAAQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480 vs. ExPASy TrEMBL
Match: A0A5D3D2R7 (Beta-carotene isomerase D27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001770 PE=4 SV=1)

HSP 1 Score: 462 bits (1188), Expect = 4.30e-163
Identity = 233/268 (86.94%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 1   MKPVALLLHPPATISSAALRF-SSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGML 60
           MKP+ALLLHPP TISSA LRF SSKSHLR RP  +SC A+QS S K   SSK EYKPG+L
Sbjct: 1   MKPMALLLHPP-TISSAPLRFNSSKSHLRNRPFILSCSALQSGSIKDGTSSKSEYKPGIL 60

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFLN+FRSKMVQEVGWDSEKPGY GLIEVA+RLTM G++NS+TIEASVRIL ALFPPL
Sbjct: 61  DDFFLNVFRSKMVQEVGWDSEKPGYGGLIEVASRLTMTGRTNSETIEASVRILTALFPPL 120

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LYR+LVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK
Sbjct: 121 LLKLYRILVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKCIGIC+NTCK PTQSFFK+QMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK
Sbjct: 181 YLEESKCIGICINTCKLPTQSFFKDQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 267
           EPCLEICP+ATRRREV  KMSA QCPKA
Sbjct: 241 EPCLEICPNATRRREVSGKMSAAQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480 vs. ExPASy TrEMBL
Match: A0A1S3BRJ4 (beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492751 PE=4 SV=1)

HSP 1 Score: 462 bits (1188), Expect = 4.30e-163
Identity = 233/268 (86.94%), Postives = 247/268 (92.16%), Query Frame = 0


Query: 1   MKPVALLLHPPATISSAALRF-SSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGML 60
           MKP+ALLLHPP TISSA LRF SSKSHLR RP  +SC A+QS S K   SSK EYKPG+L
Sbjct: 1   MKPLALLLHPP-TISSAPLRFNSSKSHLRNRPFILSCSALQSGSIKDGTSSKSEYKPGIL 60

Query: 61  DDFFLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPL 120
           DDFFLN+FRSKMVQEVGWDSEKPGY GLIEVA+RLTM G++NS+TIEASVRIL ALFPPL
Sbjct: 61  DDFFLNVFRSKMVQEVGWDSEKPGYGGLIEVASRLTMTGRTNSETIEASVRILTALFPPL 120

Query: 121 LLELYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180
           LL+LYR+LVSPIAGGKVAAIMVARVTA TCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK
Sbjct: 121 LLKLYRILVSPIAGGKVAAIMVARVTALTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCK 180

Query: 181 YLEESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240
           YLEESKCIGIC+NTCK PTQSFFK+QMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK
Sbjct: 181 YLEESKCIGICINTCKLPTQSFFKDQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILK 240

Query: 241 EPCLEICPHATRRREVLSKMSATQCPKA 267
           EPCLEICP+ATRRREV  KMSA QCPKA
Sbjct: 241 EPCLEICPNATRRREVSGKMSAAQCPKA 267

[Close]

BLAST of Cp4.1LG17g07480 vs. TAIR 10
Match: AT4G01995.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 298.1 bits (762), Expect = 6.9e-81
Identity = 153/265 (57.74%), Postives = 195/265 (73.58%), Query Frame = 0


Query: 4   VALLLHPPATISSAALRFSSKSHLRKRPLNISC-FAVQSESTKVEVSSKPEYKPGMLDDF 63
           + +LL PP TI  +   FS+K  L +R   + C  +  SE    E + K EYKPG LDDF
Sbjct: 5   IQVLLPPPTTIVFSN-SFSTKLILTRR---LRCRISNSSEVKSDEGAPKLEYKPGPLDDF 64

Query: 64  FLNLFRSKMVQEVGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLE 123
           F+  FR+K+V+EVG DSEKPGY GLIE+   L +KG++ S+T +A+VRIL +LFPPL+LE
Sbjct: 65  FMQSFRNKLVEEVGSDSEKPGYVGLIELVKLLLLKGRTRSETSDAAVRILKSLFPPLILE 124

Query: 124 LYRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLE 183
           LY++L++PIA GK+AA+MVARVT  TCQWLMG   VN I+LP+G S  SGVFVEKC+YLE
Sbjct: 125 LYKLLIAPIAQGKLAALMVARVTVLTCQWLMGPSKVNIIDLPNGESWDSGVFVEKCQYLE 184

Query: 184 ESKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPC 243
           ESKC+G+C+NTCK PTQ+FFK+ MG+PL+MEPNF DYSCQFKFGV P  PE+D  + EPC
Sbjct: 185 ESKCVGVCINTCKLPTQTFFKDYMGVPLVMEPNFKDYSCQFKFGVAP--PEDDGNVNEPC 244

Query: 244 LEICPHATRRREVLSKMSATQCPKA 268
            E C  A RR     K+ + +CP A
Sbjct: 245 FETCSIAGRR-----KLKSGECPLA 258

[Close]

BLAST of Cp4.1LG17g07480 vs. TAIR 10
Match: AT1G64680.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 141.7 bits (356), Expect = 8.3e-34
Identity = 90/262 (34.35%), Postives = 135/262 (51.53%), Query Frame = 0


Query: 17  AALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNLFRSKM----- 76
           AA+      +L  R  +  C   +       +  K  Y+ G+++  F+ LF  KM     
Sbjct: 2   AAIASLQAVNLTFRRRSTRCGIAEPSGEPAPMGLKTRYEDGLVERVFMGLFARKMDKFGS 61

Query: 77  -----VQEVG-WDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIALFPPLLLELYR 136
                 +E G W+ +   Y+  +EV+ R+ M+G+S     EA   +L+++ PP   E +R
Sbjct: 62  KKKKDTKEKGFWEYD---YESFVEVSKRV-MQGRSRVQQQEAVREVLLSMLPPGAPEQFR 121

Query: 137 MLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEESK 196
            L  P    K AA   A +T     WL+G   V  +E+ +G   +SGV ++KC+YLE S 
Sbjct: 122 KLFPPT---KWAAEFNAALTVPFFHWLVGPSQVIEVEV-NGVKQRSGVRIKKCRYLENSG 181

Query: 197 CIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCL-E 256
           C+G+C+N CK PTQ FF N+ G+PL M PN+ D SC+  +G  PP  EED   K+PCL +
Sbjct: 182 CVGMCVNMCKIPTQDFFTNEFGLPLTMNPNYEDMSCEMIYGQAPPAFEEDVATKQPCLAD 241

Query: 257 ICPHATRRREVLSKMSATQCPK 267
           IC         +S  S+  CPK
Sbjct: 242 ICS--------MSNPSSPICPK 247

[Close]

BLAST of Cp4.1LG17g07480 vs. TAIR 10
Match: AT1G03055.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-29
Identity = 79/243 (32.51%), Postives = 126/243 (51.85%), Query Frame = 0


Query: 13  TISSAALRFSSKSHLRKRPLNISCFAVQSESTKVEVSSKPEYKPGMLDDFFLNL---FRS 72
           T S    R S    L  +P+         E+ ++E S+       + D FF  +   + S
Sbjct: 22  TRSGLDRRSSISPTLCSKPVYSGKLKAAKETARIETSNTK--NASIEDSFFSKIAINYLS 81

Query: 73  KMVQE---VGWDSEKPGYDGLIEVANRLTMKGKSNSDTIEASVRILIAL---FPPLLLEL 132
           K +Q+   +   S+   YD L++ A R++     N DT +    +L +L    P ++  L
Sbjct: 82  KNLQDAAGISSSSKSTDYDRLVDTATRVS----RNFDTKQQHEFVLSSLDRALPTVISSL 141

Query: 133 YRMLVSPIAGGKVAAIMVARVTAFTCQWLMGTCTVNSIELPDGSSCQSGVFVEKCKYLEE 192
            +M   P    KV+  + A  T  +  WL+G   V   E+ +G   +S V++EKC++LE+
Sbjct: 142 IKMAFPP---SKVSRELFALFTTISFAWLVGPSEVRETEV-NGRKEKSVVYIEKCRFLEQ 201

Query: 193 SKCIGICLNTCKFPTQSFFKNQMGIPLLMEPNFNDYSCQFKFGVLPPLPEEDSILKEPCL 247
           S C+G+C + CK P+Q F KN +G+P+ MEP+FND SC+  FG  PP  E+D  +K+PC 
Sbjct: 202 SNCVGMCTHICKIPSQIFIKNSLGMPIYMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCF 254

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g07480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XA78	1.7e-28	32.51	Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D2...	[more]
R4HZ96	2.1e-26	33.64	Beta-carotene isomerase D27, chloroplastic OS=Medicago truncatula OX=3880 GN=D27...	[more]
C7AU21	3.8e-23	29.38	Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Cp4.1LG17g07480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514967.1	1.68e-192	100.00	beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022959652.1	2.29e-190	98.88	beta-carotene isomerase D27, chloroplastic [Cucurbita moschata]	[more]
XP_023004624.1	2.20e-188	98.13	beta-carotene isomerase D27, chloroplastic [Cucurbita maxima]	[more]
KAG6593243.1	4.44e-188	97.75	Beta-carotene isomerase D27, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
KAG7025594.1	1.05e-186	97.00	Beta-carotene isomerase D27, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Cp4.1LG17g07480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H551	1.11e-190	98.88	beta-carotene isomerase D27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KWU1	1.07e-188	98.13	beta-carotene isomerase D27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0K9J2	1.50e-163	87.31	DUF4033 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G407750 PE=...	[more]
A0A5D3D2R7	4.30e-163	86.94	Beta-carotene isomerase D27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BRJ4	4.30e-163	86.94	beta-carotene isomerase D27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034927...	[more]

BLAST of Cp4.1LG17g07480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01995.1	6.9e-81	57.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G64680.1	8.3e-34	34.35	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G03055.1	1.2e-29	32.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025114	Beta-carotene isomerase D27-like, C-terminal	PFAM	PF13225	DUF4033	coord: 151..233 e-value: 2.1E-33 score: 114.1
None	No IPR available	PANTHER	PTHR33591:SF2	BETA-CAROTENE ISOMERASE D27	coord: 29..267
IPR038938	Beta-carotene isomerase D27-like	PANTHER	PTHR33591	BETA-CAROTENE ISOMERASE D27	coord: 29..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g07480.1	Cp4.1LG17g07480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016853	isomerase activity