Cp4.1LG17g07330 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g07330
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	GATA transcription factor 15-like
Location	Cp4.1LG17: 6017491 .. 6017992 (+)
RNA-Seq Expression	Cp4.1LG17g07330
Synteny	Cp4.1LG17g07330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCTTCATCAACAACCATCCCGATCTCTCTGGCTCGACCTTCAATCCATCGTCTTTAATGGCGATTTCAAACCATGGTCTGCTCTGTATCGAGCCGCAGAAACAGAGGACCTGTCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCCAAGGGTAACCACTTAAACAATGGTGTGATTCATTCATCATTTAATTTCAATAATCTTTTGATTTTGATCGATTTCTGGGATTTTTTTTTCGACAGTCGCTGTGTAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGGAAATGGGAAGAAAGTGGTGAGAGTGGTGGATTTGGGGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCTTCCGGCTATGTATCATAA

mRNA sequence

ATGGCCTTCTTCATCAACAACCATCCCGATCTCTCTGGCTCGACCTTCAATCCATCGTCTTTAATGGCGATTTCAAACCATGGTCTGCTCTGTATCGAGCCGCAGAAACAGAGGACCTGTCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCCAAGGTCGCTGTGTAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGGAAATGGGAAGAAAGTGGTGAGAGTGGTGGATTTGGGGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCTTCCGGCTATGTATCATAA

Coding sequence (CDS)

ATGGCCTTCTTCATCAACAACCATCCCGATCTCTCTGGCTCGACCTTCAATCCATCGTCTTTAATGGCGATTTCAAACCATGGTCTGCTCTGTATCGAGCCGCAGAAACAGAGGACCTGTCACCACTGTCGCACCACCAGAACCCCCCTCTGGAGAGCCGGTCCTGCCGGCCCAAGGTCGCTGTGTAATGCGTGTGGGATTAGATACAGGAAGCTGAAGAACAGTAATGGCGGAGTGAATAAGAGTGGAAATGGGAAGAAAGTGGTGAGAGTGGTGGATTTGGGGAGAGAGATAATGCTGCATAGAGCGACGGCGGCGATGGCGGAAAATGGAGGTGCAGAGACGATCGGAGAAGAAGAACAGGCGGCGGCGATGCTTCTCATGGCTCTATCTTCCGGCTATGTATCATAA

Protein sequence

MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYVS

Homology

[Close]

BLAST of Cp4.1LG17g07330 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-16
Identity = 59/126 (46.83%), Postives = 76/126 (60.32%), Query Frame = 0


Query: 19  SSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYR-------- 78
           SS  AISN         ++++C  C T++TPLWR GPAGP+SLCNACGIR R        
Sbjct: 31  SSNEAISN---------EKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLIS 90

Query: 79  -----KLKNSNGGVNKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEEQAAAM 132
                K K S+    K G+  K  R+++LGRE+M+ R+T   AEN     +GEEEQ AA+
Sbjct: 91  NRSEDKKKKSHNRNPKFGDSLK-QRLMELGREVMMQRST---AENQRRNKLGEEEQ-AAV 142

[Close]

BLAST of Cp4.1LG17g07330 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-13
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 36  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSG 95
           K++TC  C T++TPLWR GP GP+SLCNACGIR RK             K+S+GG N+  
Sbjct: 34  KKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRGGTEDNKKLKKSSSGGGNRKF 93

Query: 96  NGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYV 136
                  ++DLG   +  R+T         + +GEEEQ AA+LLMALS G V
Sbjct: 94  GESLKQSLMDLG---IRKRSTVEKQR----QKLGEEEQ-AAVLLMALSYGSV 137

[Close]

BLAST of Cp4.1LG17g07330 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 38  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSGNGKKVVRVVDLGRE 97
           R C  C+TT+TP+WR GP GP+SLCNACGIR+RK + S             + ++   + 
Sbjct: 26  RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSE---------LLGIHIIRSHKS 85

Query: 98  IMLHRATAAMAENGGA-----ETIGEEEQAAAMLLMALSSGYVS 137
           +   +     + +GG       ++ EEEQAA  LL+   S  ++
Sbjct: 86  LASKKINLLSSSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of Cp4.1LG17g07330 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.3e-10
Identity = 40/110 (36.36%), Postives = 53/110 (48.18%), Query Frame = 0


Query: 38  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKN-----SNGG-------------V 97
           R C  C TT+TPLWR+GP GP+SLCNACGIR RK +      +NGG             V
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKARRAMAAAANGGAAVAPAKSVAAAPV 235

Query: 98  NKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMA 130
           N     KK  R  D+ R +   +    M ++  A     +  AA  ++ A
Sbjct: 236 NNKPAAKKEKRAADVDRSLPF-KKRCKMVDHVAAAVAATKPTAAGEVVAA 284

[Close]

BLAST of Cp4.1LG17g07330 vs. ExPASy Swiss-Prot
Match: Q5HZ36 (GATA transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=GATA21 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 38  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS 76
           R C  C TT+TPLWR+GP GP+SLCNACGIR RK + +
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRA 267

[Close]

BLAST of Cp4.1LG17g07330 vs. NCBI nr
Match: XP_023515141.1 (GATA transcription factor 15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277 bits (709), Expect = 4.49e-94
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60
           MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS
Sbjct: 1   MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60

Query: 61  LCNACGIRYRKLKNSNGGVNKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEE 120
           LCNACGIRYRKLKNSNGGVNKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEE
Sbjct: 61  LCNACGIRYRKLKNSNGGVNKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEE 120

Query: 121 QAAAMLLMALSSGYVS 136
           QAAAMLLMALSSGYVS
Sbjct: 121 QAAAMLLMALSSGYVS 136

[Close]

BLAST of Cp4.1LG17g07330 vs. NCBI nr
Match: XP_022959984.1 (GATA transcription factor 15-like [Cucurbita moschata] >KAG6593223.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030201.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268 bits (685), Expect = 2.06e-90
Identity = 133/136 (97.79%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60
           MAFFINNHPDLSGSTFNPSSLMAISN GLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS
Sbjct: 1   MAFFINNHPDLSGSTFNPSSLMAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60

Query: 61  LCNACGIRYRKLKNSNGGVNKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEE 120
           LCNACGIRYRKLKNSNGGVNKS NGKKVVRVV LGREIMLHRATAAMAENGGAETIGEEE
Sbjct: 61  LCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEE 120

Query: 121 QAAAMLLMALSSGYVS 136
           QAAAMLLMALSSGYVS
Sbjct: 121 QAAAMLLMALSSGYVS 136

[Close]

BLAST of Cp4.1LG17g07330 vs. NCBI nr
Match: XP_023004687.1 (GATA transcription factor 15-like [Cucurbita maxima])

HSP 1 Score: 267 bits (682), Expect = 5.90e-90
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60
           MAFFINNHPDLSGSTFNPSSLMAISN GLLC EPQKQRTCHHCRTTRTPLWRAGPAGPRS
Sbjct: 1   MAFFINNHPDLSGSTFNPSSLMAISNQGLLCTEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60

Query: 61  LCNACGIRYRKLKNSNGGVNKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEE 120
           LCNACGIRYRKLKN+NGGVNKSGNGKKVVRVV LGREIMLHR TAAMAENGGAETIGEEE
Sbjct: 61  LCNACGIRYRKLKNNNGGVNKSGNGKKVVRVVGLGREIMLHRTTAAMAENGGAETIGEEE 120

Query: 121 QAAAMLLMALSSGYVS 136
           QAAAMLLMALSSGYVS
Sbjct: 121 QAAAMLLMALSSGYVS 136

[Close]

BLAST of Cp4.1LG17g07330 vs. NCBI nr
Match: XP_011659382.1 (GATA transcription factor 15 [Cucumis sativus] >KGN44993.1 hypothetical protein Csa_016706 [Cucumis sativus])

HSP 1 Score: 176 bits (447), Expect = 1.11e-53
Identity = 101/153 (66.01%), Postives = 113/153 (73.86%), Query Frame = 0


Query: 1   MAFFINNHPDLSGSTFNPSSLM-AISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPR 60
           +AF +N   DLS STFNP SLM A+S  GLL +E +KQR C HCR TRTPLWRAGPAGPR
Sbjct: 17  IAFLMNRAADLSASTFNPPSLMTAVSKEGLLELEAEKQRACVHCRATRTPLWRAGPAGPR 76

Query: 61  SLCNACGIRYRKLK---NSNGGVN-----KSGNGKKV--------VRVVDLGREIMLHRA 120
           SLCNACGIRYRK+K   N+NGGVN     K G GKK+        VRVV LGREIM+HR 
Sbjct: 77  SLCNACGIRYRKMKMNSNNNGGVNNNSNNKMGKGKKMGGSGGSLKVRVVRLGREIMVHRP 136

Query: 121 TAAMAE-NGGAETIGEEEQAAAMLLMALSSGYV 135
           T AM + N  AE+IGEEEQ AA+LLMALSSGYV
Sbjct: 137 TTAMEDDNEVAESIGEEEQTAALLLMALSSGYV 169

[Close]

BLAST of Cp4.1LG17g07330 vs. NCBI nr
Match: KAA0046674.1 (GATA transcription factor 15-like [Cucumis melo var. makuwa] >TYK18209.1 GATA transcription factor 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 2.87e-53
Identity = 97/154 (62.99%), Postives = 109/154 (70.78%), Query Frame = 0


Query: 1   MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60
           MAF +N   D S STFNPS + A+S  GL  +E +KQR C HCR TRTPLWRAGPAGPRS
Sbjct: 13  MAFLMNRAADHSPSTFNPSLMTAVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPRS 72

Query: 61  LCNACGIRYRKLK----------NSNGGVNKSGNGKKV-------VRVVDLGREIMLHRA 120
           LCNACGIRYRK+K          N+N   NK G GKK+       +RVV LGREIM+HR 
Sbjct: 73  LCNACGIRYRKMKMNSNNDGEVNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIMVHRR 132

Query: 121 -TAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 136
            T AM +NG AE+IGEEEQ AAMLLMALSSGYVS
Sbjct: 133 PTTAMEDNGVAESIGEEEQTAAMLLMALSSGYVS 166

[Close]

BLAST of Cp4.1LG17g07330 vs. ExPASy TrEMBL
Match: A0A6J1H9M3 (GATA transcription factor 15-like OS=Cucurbita moschata OX=3662 GN=LOC111460872 PE=4 SV=1)

HSP 1 Score: 268 bits (685), Expect = 9.97e-91
Identity = 133/136 (97.79%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60
           MAFFINNHPDLSGSTFNPSSLMAISN GLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS
Sbjct: 1   MAFFINNHPDLSGSTFNPSSLMAISNQGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60

Query: 61  LCNACGIRYRKLKNSNGGVNKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEE 120
           LCNACGIRYRKLKNSNGGVNKS NGKKVVRVV LGREIMLHRATAAMAENGGAETIGEEE
Sbjct: 61  LCNACGIRYRKLKNSNGGVNKSVNGKKVVRVVGLGREIMLHRATAAMAENGGAETIGEEE 120

Query: 121 QAAAMLLMALSSGYVS 136
           QAAAMLLMALSSGYVS
Sbjct: 121 QAAAMLLMALSSGYVS 136

[Close]

BLAST of Cp4.1LG17g07330 vs. ExPASy TrEMBL
Match: A0A6J1KR45 (GATA transcription factor 15-like OS=Cucurbita maxima OX=3661 GN=LOC111497907 PE=4 SV=1)

HSP 1 Score: 267 bits (682), Expect = 2.86e-90
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60
           MAFFINNHPDLSGSTFNPSSLMAISN GLLC EPQKQRTCHHCRTTRTPLWRAGPAGPRS
Sbjct: 1   MAFFINNHPDLSGSTFNPSSLMAISNQGLLCTEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60

Query: 61  LCNACGIRYRKLKNSNGGVNKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEE 120
           LCNACGIRYRKLKN+NGGVNKSGNGKKVVRVV LGREIMLHR TAAMAENGGAETIGEEE
Sbjct: 61  LCNACGIRYRKLKNNNGGVNKSGNGKKVVRVVGLGREIMLHRTTAAMAENGGAETIGEEE 120

Query: 121 QAAAMLLMALSSGYVS 136
           QAAAMLLMALSSGYVS
Sbjct: 121 QAAAMLLMALSSGYVS 136

[Close]

BLAST of Cp4.1LG17g07330 vs. ExPASy TrEMBL
Match: A0A0A0K6B1 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G405980 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 5.35e-54
Identity = 101/153 (66.01%), Postives = 113/153 (73.86%), Query Frame = 0


Query: 1   MAFFINNHPDLSGSTFNPSSLM-AISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPR 60
           +AF +N   DLS STFNP SLM A+S  GLL +E +KQR C HCR TRTPLWRAGPAGPR
Sbjct: 17  IAFLMNRAADLSASTFNPPSLMTAVSKEGLLELEAEKQRACVHCRATRTPLWRAGPAGPR 76

Query: 61  SLCNACGIRYRKLK---NSNGGVN-----KSGNGKKV--------VRVVDLGREIMLHRA 120
           SLCNACGIRYRK+K   N+NGGVN     K G GKK+        VRVV LGREIM+HR 
Sbjct: 77  SLCNACGIRYRKMKMNSNNNGGVNNNSNNKMGKGKKMGGSGGSLKVRVVRLGREIMVHRP 136

Query: 121 TAAMAE-NGGAETIGEEEQAAAMLLMALSSGYV 135
           T AM + N  AE+IGEEEQ AA+LLMALSSGYV
Sbjct: 137 TTAMEDDNEVAESIGEEEQTAALLLMALSSGYV 169

[Close]

BLAST of Cp4.1LG17g07330 vs. ExPASy TrEMBL
Match: A0A5A7TUD0 (GATA transcription factor 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001480 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 1.39e-53
Identity = 97/154 (62.99%), Postives = 109/154 (70.78%), Query Frame = 0


Query: 1   MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60
           MAF +N   D S STFNPS + A+S  GL  +E +KQR C HCR TRTPLWRAGPAGPRS
Sbjct: 13  MAFLMNRAADHSPSTFNPSLMTAVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPRS 72

Query: 61  LCNACGIRYRKLK----------NSNGGVNKSGNGKKV-------VRVVDLGREIMLHRA 120
           LCNACGIRYRK+K          N+N   NK G GKK+       +RVV LGREIM+HR 
Sbjct: 73  LCNACGIRYRKMKMNSNNDGEVNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIMVHRR 132

Query: 121 -TAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 136
            T AM +NG AE+IGEEEQ AAMLLMALSSGYVS
Sbjct: 133 PTTAMEDNGVAESIGEEEQTAAMLLMALSSGYVS 166

[Close]

BLAST of Cp4.1LG17g07330 vs. ExPASy TrEMBL
Match: A0A1S3BSR7 (GATA transcription factor 15-like OS=Cucumis melo OX=3656 GN=LOC103492777 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 6.40e-53
Identity = 97/158 (61.39%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 1   MAFFINNHPDLSGSTFNPSSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRS 60
           MAF +N   D S STFNPS + A+S  GL  +E +KQR C HCR TRTPLWRAGPAGPRS
Sbjct: 13  MAFLMNRAADHSPSTFNPSLMTAVSEQGLFELEAEKQRACVHCRATRTPLWRAGPAGPRS 72

Query: 61  LCNACGIRYRKLK--------------NSNGGVNKSGNGKKV-------VRVVDLGREIM 120
           LCNACGIRYRK+K              N+N   NK G GKK+       +RVV LGREIM
Sbjct: 73  LCNACGIRYRKMKMNSNNDGEVNNNNNNNNNNNNKMGKGKKMGGGGSLKLRVVRLGREIM 132

Query: 121 LHRA-TAAMAENGGAETIGEEEQAAAMLLMALSSGYVS 136
           +HR  T AM +NG AE+IGEEEQ AAMLLMALSSGYVS
Sbjct: 133 VHRRPTTAMEDNGVAESIGEEEQTAAMLLMALSSGYVS 170

[Close]

BLAST of Cp4.1LG17g07330 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-17
Identity = 59/126 (46.83%), Postives = 76/126 (60.32%), Query Frame = 0


Query: 19  SSLMAISNHGLLCIEPQKQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYR-------- 78
           SS  AISN         ++++C  C T++TPLWR GPAGP+SLCNACGIR R        
Sbjct: 31  SSNEAISN---------EKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLIS 90

Query: 79  -----KLKNSNGGVNKSGNGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEEQAAAM 132
                K K S+    K G+  K  R+++LGRE+M+ R+T   AEN     +GEEEQ AA+
Sbjct: 91  NRSEDKKKKSHNRNPKFGDSLK-QRLMELGREVMMQRST---AENQRRNKLGEEEQ-AAV 142

[Close]

BLAST of Cp4.1LG17g07330 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-14
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 36  KQRTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRK------------LKNSNGGVNKSG 95
           K++TC  C T++TPLWR GP GP+SLCNACGIR RK             K+S+GG N+  
Sbjct: 34  KKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRGGTEDNKKLKKSSSGGGNRKF 93

Query: 96  NGKKVVRVVDLGREIMLHRATAAMAENGGAETIGEEEQAAAMLLMALSSGYV 136
                  ++DLG   +  R+T         + +GEEEQ AA+LLMALS G V
Sbjct: 94  GESLKQSLMDLG---IRKRSTVEKQR----QKLGEEEQ-AAVLLMALSYGSV 137

[Close]

BLAST of Cp4.1LG17g07330 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-11
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 38  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNSNGGVNKSGNGKKVVRVVDLGRE 97
           R C  C+TT+TP+WR GP GP+SLCNACGIR+RK + S             + ++   + 
Sbjct: 26  RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSE---------LLGIHIIRSHKS 85

Query: 98  IMLHRATAAMAENGGA-----ETIGEEEQAAAMLLMALSSGYVS 137
           +   +     + +GG       ++ EEEQAA  LL+   S  ++
Sbjct: 86  LASKKINLLSSSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of Cp4.1LG17g07330 vs. TAIR 10
Match: AT5G56860.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 64.3 bits (155), Expect = 8.6e-11
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 38  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS 76
           R C  C TT+TPLWR+GP GP+SLCNACGIR RK + +
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRA 267

[Close]

BLAST of Cp4.1LG17g07330 vs. TAIR 10
Match: AT4G26150.1 (cytokinin-responsive gata factor 1 )

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 38  RTCHHCRTTRTPLWRAGPAGPRSLCNACGIRYRKLKNS 76
           R C  C TT+TPLWR+GP GP+SLCNACGIR RK + +
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRA 236

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g07330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG10	3.0e-16	46.83	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9FJ10	1.8e-13	44.64	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q8LC59	1.4e-10	34.62	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q6YW48	9.3e-10	36.36	Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ...	[more]
Q5HZ36	1.2e-09	65.79	GATA transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=GATA21 PE=1 SV=2	[more]

BLAST of Cp4.1LG17g07330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515141.1	4.49e-94	100.00	GATA transcription factor 15-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959984.1	2.06e-90	97.79	GATA transcription factor 15-like [Cucurbita moschata] >KAG6593223.1 GATA transc...	[more]
XP_023004687.1	5.90e-90	96.32	GATA transcription factor 15-like [Cucurbita maxima]	[more]
XP_011659382.1	1.11e-53	66.01	GATA transcription factor 15 [Cucumis sativus] >KGN44993.1 hypothetical protein ...	[more]
KAA0046674.1	2.87e-53	62.99	GATA transcription factor 15-like [Cucumis melo var. makuwa] >TYK18209.1 GATA tr...	[more]

BLAST of Cp4.1LG17g07330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9M3	9.97e-91	97.79	GATA transcription factor 15-like OS=Cucurbita moschata OX=3662 GN=LOC111460872 ...	[more]
A0A6J1KR45	2.86e-90	96.32	GATA transcription factor 15-like OS=Cucurbita maxima OX=3661 GN=LOC111497907 PE...	[more]
A0A0A0K6B1	5.35e-54	66.01	GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G405980 P...	[more]
A0A5A7TUD0	1.39e-53	62.99	GATA transcription factor 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BSR7	6.40e-53	61.39	GATA transcription factor 15-like OS=Cucumis melo OX=3656 GN=LOC103492777 PE=4 S...	[more]

BLAST of Cp4.1LG17g07330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06740.1	2.1e-17	46.83	GATA transcription factor 15	[more]
AT5G49300.1	1.3e-14	44.64	GATA transcription factor 16	[more]
AT5G26930.1	1.0e-11	34.62	GATA transcription factor 23	[more]
AT5G56860.1	8.6e-11	65.79	GATA type zinc finger transcription factor family protein	[more]
AT4G26150.1	1.1e-10	65.79	cytokinin-responsive gata factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 34..86 e-value: 8.2E-13 score: 58.6
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 40..71 e-value: 1.4E-16 score: 59.8
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 40..65
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 34..70 score: 12.47909
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 39..71 e-value: 1.84117E-14 score: 61.2346
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 35..93 e-value: 8.4E-17 score: 63.0
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 35..86 coord: 87..135
None	No IPR available	PANTHER	PTHR47172:SF9	GATA TRANSCRIPTION FACTOR 16	coord: 35..86 coord: 87..135
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 33..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g07330.1	Cp4.1LG17g07330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding