Cp4.1LG17g06790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g06790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Histone H2A
Location	Cp4.1LG17: 6425401 .. 6427832 (+)
RNA-Seq Expression	Cp4.1LG17g06790
Synteny	Cp4.1LG17g06790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGATGAAGTTCACCACTAATTTGAATAGAAAGGAACGAGTTGAATTTTTATTGTCTCGCATTCTGTAAGTTTTGTTATCAGCCAAACAAGAACTGCAAAATCATACTGACAGGATTATTTTATATATTAAAAATGGTATATAGATTATTCTGGAACATTTCTACCTTAATCCTTCGAAATTCGATAGTTCTACTGTCCATCTCTGTGAATTTTCTCATGCTCCGATCATCCGCCGTAAAAGAACATAATACTTAGTTCATTTTATTTTACCAAGGGCGACCGAGGGAAACCCTAAGCGGCGAACTCGGTTTCGTAGTATCAGAGGGCCGGCCTTTAGTTGCCTGTCGGCCTGTGCGGAGCCTGTTGGCGCAAGAGCACCTGTCTACCTCTCCGCTGCCTCTGAATATCCCGCCGCCGAGGTTAGAACTTCATCTTTCATTGTATCTTTTAACTTGTGTTTCCGATATGTTTATTTGGGGAGTTGTTGCATTCGTTGGAGTGTTGTAGTGTAGTGTTAGATCACTTGAATCGGAATTGTCGTATTTGATTTAGTTTTGTCTCTTCTGCTTTTGCTTTGGAATCGATTGGGAGGAGGATCTTATTTGTTTCTCTTGGCAAATTGGTTGTTGCAGAAATTGTTCATGCGTTGGCATCGCATGAAGTGATGTTACTTTACTATAATCGCATTCATAGTAGTAATCTTGAGCTTTGAAGTCTGAATTCATTGCAGTTTATTCAGTTTTTCCGGGTGGATGAGTTCATGAAGTTACTAGATTATGCTGATTTATTCTTTGGATTAATGAAGAATCACTTGGGTTCATCCCAATATTTTCATGAGATATGATGATGATTTTGTCTTACCTTCCAAGTAGCTTTATATACTTCAAATTTCCATTGGCAGGTGCTTGAGCTTGCAGGCAATGCTATCAGAGACAACAAGAGTAGCATTGTCCTGAGGCGCTTGCTGGCCGGAACGGCGAGGAGCTGACCAACTCTTGAGTGATGTGAACACTGCAAATGGTGGAGTGTTGCCGAATATCGATCAAAACCTCTTGCCTAAGAATGCAGGATCAGGCAAAAGCAACAATGAATCTGCATCACAAGAGTTCTAAAAGTTTCTGATCATCAACAAATTTCGATACACGAGGTACGTAAGAGTGAAAATGGTTGTGTGGTTTCATTGCCTTGGTTTGGAATCTGTTTAAATTTTATGAACCACACATAACCGTTCTCTAAGATCGCACGTTGATTGGGGAGGAGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTACCTAATAGATGGGTTTTAAAACTGTGAGGTTGACAACAATATGTAACGGGTCAAAACGGACAATATCTACTAGTGGTGAGCTTGAGCTATTACAAATGGTATCAAAGCCATACACCAAGCGGTCTACCAGCGAGAACGCGGGCTCCCAGAGAGATGGATTGTGAGATCCCATATTGATTGGGGAGGGGAACGAAACATTCTTTATAAGGGTGTGAAAACTTCTCCCTAATGGACACGTTTTAGAATTGTGAGACTGACAACAATACGTGATAGGCCAAAGCGGACATTATCTGCTAGTAGTAGGCCTGAGCTATTACATCTTTTGAATTGAAACTATATTGTGTTCTATCCCTGTTGCTTGCCTGCTTGTTCGTCGTATCGGTTTGGCAATAGGAATACACCATTCCCATTTAAGATATCTGCCTTAGGTTGATTGTGCCGCTGAATCTACCCGTTTCATTACCTTTGTGGCCATTAGATTACAATCAATCTTGAATAGGAAAGAACACATTCAACTAGAACGACCCCTAGGAAATGTTTTCTAGAAGCCAAAGCAGCCATTTCAATGGTGTGACGAGAATAGGGCGATAGAACAGATTCTTTTACGTACTTCGTTGAGTCAGTCGTGTCGGGAATCCAGTGGATCTCGCTCATTTGGTGTCTCTACAAACACCATATTGCCCTCACCCACCTCTACCTTCCCTGTCCTGAGGACTAGGCTGTTTCAACTGTAGGAGAATATCCCATTCATCATGTCGATAATGTCGCTTGGCTCGACCACATGAACCGCAGCTATGTCATCAGCCACCGACAATAGACAAGCCTTGTTTTGTCCTTCAACTGTTGTCTTCCCTTCCTCCAAAACTATGAACTTTGCATCCACATTGTTTTGTTCTGCTCGGACCAAGTCCTCGAGAGAGCTCGGAACCCATGTTGCAAAGTTCTCCTATCAGATCCTATGTACTTAGATTTTTCAAATGAATTATTTGGTTCACAATTAATGATATGAATATTTTCAAATTATTGTTGACAAAGATGTCTGTTCTTCAATAATTCAATCATCCCTATGCTTTTTCACATCCATTGTACAATGTCTTTTTTGTTGGGTCATTGTTCAAATTGGGATTTTTTT

mRNA sequence

ATGCTGATGAAGTTCACCACTAATTTGAATAGAAAGGAACGAGTTGAATTTTTATTGTCTCGCATTCTGGCGACCGAGGGAAACCCTAAGCGGCGAACTCGGTTTCGTAGTATCAGAGGGCCGGCCTTTAGTTGCCTGTCGGCCTGTGCGGAGCCTGTTGGCGCAAGAGCACCTGTCTACCTCTCCGCTGCCTCTGAATATCCCGCCGCCGAGGTGCTTGAGCTTGCAGGCAATGCTATCAGAGACAACAAGAGTAGCATTGTCCTGAGGCGCTTGCTGGCCGGAACGGCGAGGAGCTGACCAACTCTTGAGTGATGTGAACACTGCAAATGGTGGAGTGTTGCCGAATATCGATCAAAACCTCTTGCCTAAGAATGCAGGATCAGGCAAAAGCAACAATGAATCTGCATCACAAGAGTTCTAAAAGTTTCTGATCATCAACAAATTTCGATACACGAGGTACGTAAGAGTGAAAATGGTTGTGTGGTTTCATTGCCTTGGTTTGGAATCTGTTTAAATTTTATGAACCACACATAACCGTTCTCTAAGATCGCACGTTGATTGGGGAGGAGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTACCTAATAGATGGGTTTTAAAACTGTGAGGTTGACAACAATATGTAACGGGTCAAAACGGACAATATCTACTAGTGGTGAGCTTGAGCTATTACAAATGGTATCAAAGCCATACACCAAGCGGTCTACCAGCGAGAACGCGGGCTCCCAGAGAGATGGATTGTGAGATCCCATATTGATTGGGGAGGGGAACGAAACATTCTTTATAAGGGTGTGAAAACTTCTCCCTAATGGACACGTTTTAGAATTGTGAGACTGACAACAATACGTGATAGGCCAAAGCGGACATTATCTGCTAGTAGTAGGCCTGAGCTATTACATCTTTTGAATTGAAACTATATTGTGTTCTATCCCTGTTGCTTGCCTGCTTGTTCGTCGTATCGGTTTGGCAATAGGAATACACCATTCCCATTTAAGATATCTGCCTTAGGTTGATTGTGCCGCTGAATCTACCCGTTTCATTACCTTTGTGGCCATTAGATTACAATCAATCTTGAATAGGAAAGAACACATTCAACTAGAACGACCCCTAGGAAATGTTTTCTAGAAGCCAAAGCAGCCATTTCAATGGTGTGACGAGAATAGGGCGATAGAACAGATTCTTTTACGTACTTCGTTGAGTCAGTCGTGTCGGGAATCCAGTGGATCTCGCTCATTTGGTGTCTCTACAAACACCATATTGCCCTCACCCACCTCTACCTTCCCTGTCCTGAGGACTAGGCTGTTTCAACTGTAGGAGAATATCCCATTCATCATGTCGATAATGTCGCTTGGCTCGACCACATGAACCGCAGCTATGTCATCAGCCACCGACAATAGACAAGCCTTGTTTTGTCCTTCAACTGTTGTCTTCCCTTCCTCCAAAACTATGAACTTTGCATCCACATTGTTTTGTTCTGCTCGGACCAAGTCCTCGAGAGAGCTCGGAACCCATGTTGCAAAGTTCTCCTATCAGATCCTATGTACTTAGATTTTTCAAATGAATTATTTGGTTCACAATTAATGATATGAATATTTTCAAATTATTGTTGACAAAGATGTCTGTTCTTCAATAATTCAATCATCCCTATGCTTTTTCACATCCATTGTACAATGTCTTTTTTGTTGGGTCATTGTTCAAATTGGGATTTTTTT

Coding sequence (CDS)

ATGCTGATGAAGTTCACCACTAATTTGAATAGAAAGGAACGAGTTGAATTTTTATTGTCTCGCATTCTGGCGACCGAGGGAAACCCTAAGCGGCGAACTCGGTTTCGTAGTATCAGAGGGCCGGCCTTTAGTTGCCTGTCGGCCTGTGCGGAGCCTGTTGGCGCAAGAGCACCTGTCTACCTCTCCGCTGCCTCTGAATATCCCGCCGCCGAGGTGCTTGAGCTTGCAGGCAATGCTATCAGAGACAACAAGAGTAGCATTGTCCTGAGGCGCTTGCTGGCCGGAACGGCGAGGAGCTGA

Protein sequence

MLMKFTTNLNRKERVEFLLSRILATEGNPKRRTRFRSIRGPAFSCLSACAEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLLAGTARS

Homology

[Close]

BLAST of Cp4.1LG17g06790 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRR 92
          AE VGA APVYLSA  EY AAEVLELAGNA RDNK++ ++ R
Sbjct: 45 AERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPR 86

[Close]

BLAST of Cp4.1LG17g06790 vs. ExPASy Swiss-Prot
Match: Q6WV66 (Histone H2A OS=Mytilus californianus OX=6549 PE=3 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLL 94
          AE VGA APVYL+A  EY AAEVLELAGNA RDNK S ++ R L
Sbjct: 40 AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHL 83

[Close]

BLAST of Cp4.1LG17g06790 vs. ExPASy Swiss-Prot
Match: Q6WV69 (Histone H2A OS=Mytilus chilensis OX=173667 PE=3 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLL 94
          AE VGA APVYL+A  EY AAEVLELAGNA RDNK S ++ R L
Sbjct: 40 AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHL 83

[Close]

BLAST of Cp4.1LG17g06790 vs. ExPASy Swiss-Prot
Match: Q8I0T3 (Histone H2A OS=Mytilus edulis OX=6550 PE=3 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLL 94
          AE VGA APVYL+A  EY AAEVLELAGNA RDNK S ++ R L
Sbjct: 40 AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHL 83

[Close]

BLAST of Cp4.1LG17g06790 vs. ExPASy Swiss-Prot
Match: Q6WV88 (Histone H2A OS=Mytilus galloprovincialis OX=29158 PE=3 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLL 94
          AE VGA APVYL+A  EY AAEVLELAGNA RDNK S ++ R L
Sbjct: 40 AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHL 83

[Close]

BLAST of Cp4.1LG17g06790 vs. NCBI nr
Match: RVW21243.1 (Histone H2AX [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 3.79e-08
Identity = 38/79 (48.10%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 23 LATEGNPKRRTRF----------RSIRGPAFSCLSACAEPVGARAPVYLSAASEYPAAEV 82
          +  E +P+   RF          +S   P F      AE VGA APVYLSA  EY AAEV
Sbjct: 1  MGAEASPRPPNRFPDRQRRVFSSQSAESPVFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 60

Query: 83 LELAGNAIRDNKSSIVLRR 91
          LELAGNA RDNK S ++ R
Sbjct: 61 LELAGNAARDNKKSRIVPR 79

[Close]

BLAST of Cp4.1LG17g06790 vs. NCBI nr
Match: GFU07950.1 (histone H2A, partial [Trichonephila clavipes])

HSP 1 Score: 56.6 bits (135), Expect = 5.54e-08
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 49 CAEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLL 93
          CAE VGA APVYL+A  EY AAEVLELAGNA RDNK + ++ R L
Sbjct: 2  CAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHL 46

[Close]

BLAST of Cp4.1LG17g06790 vs. NCBI nr
Match: KAF5402779.1 (hypothetical protein PHET_03190 [Paragonimus heterotremus])

HSP 1 Score: 56.6 bits (135), Expect = 1.10e-07
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLL 93
          AEPVGA APVYL+A  EY AAEVLELAGNA RDNK + ++ R L
Sbjct: 21 AEPVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHL 64

[Close]

BLAST of Cp4.1LG17g06790 vs. NCBI nr
Match: GFU07948.1 (histone H2A [Trichonephila clavipes])

HSP 1 Score: 56.6 bits (135), Expect = 1.27e-07
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 49 CAEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLL 93
          CAE VGA APVYL+A  EY AAEVLELAGNA RDNK + ++ R L
Sbjct: 39 CAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHL 83

[Close]

BLAST of Cp4.1LG17g06790 vs. NCBI nr
Match: AGV13366.1 (histone 2A, partial [Monalocoris amamianus])

HSP 1 Score: 55.1 bits (131), Expect = 1.59e-07
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLLAGTARS 99
          AE VGA APVYL+A  EY AAEVLELAGNA RDNK S ++ R L    R+
Sbjct: 19 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQTAIRN 68

[Close]

BLAST of Cp4.1LG17g06790 vs. ExPASy TrEMBL
Match: A0A438CDF0 (Histone H2A OS=Vitis vinifera OX=29760 GN=HIS2A_2 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.84e-08
Identity = 38/79 (48.10%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 23 LATEGNPKRRTRF----------RSIRGPAFSCLSACAEPVGARAPVYLSAASEYPAAEV 82
          +  E +P+   RF          +S   P F      AE VGA APVYLSA  EY AAEV
Sbjct: 1  MGAEASPRPPNRFPDRQRRVFSSQSAESPVFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 60

Query: 83 LELAGNAIRDNKSSIVLRR 91
          LELAGNA RDNK S ++ R
Sbjct: 61 LELAGNAARDNKKSRIVPR 79

[Close]

BLAST of Cp4.1LG17g06790 vs. ExPASy TrEMBL
Match: A0A075C6W3 (Histone H2A (Fragment) OS=Monalocoris amamianus OX=856712 GN=H2A PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.70e-08
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLLAGTARS 99
          AE VGA APVYL+A  EY AAEVLELAGNA RDNK S ++ R L    R+
Sbjct: 19 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQTAIRN 68

[Close]

BLAST of Cp4.1LG17g06790 vs. ExPASy TrEMBL
Match: V4B254 (Histone H2A (Fragment) OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_101108 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.34e-07
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLL 93
          AE VGA APVYL+A  EY AAEVLELAGNA RDNK S ++ R L
Sbjct: 4  AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHL 47

[Close]

BLAST of Cp4.1LG17g06790 vs. ExPASy TrEMBL
Match: A0A183BEK3 (Histone H2A OS=Echinostoma caproni OX=27848 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.55e-07
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 51 EPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLL 93
          E VGARAPVYL+A  EY AAEVLELAGNA RDNK + ++ R L
Sbjct: 19 ESVGARAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHL 61

[Close]

BLAST of Cp4.1LG17g06790 vs. ExPASy TrEMBL
Match: A0A3P8LCZ8 (Histone H2A OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS17637 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.55e-07
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 51 EPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRRLL 93
          E VGARAPVYL+A  EY AAEVLELAGNA RDNK + ++ R L
Sbjct: 19 ESVGARAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHL 61

[Close]

BLAST of Cp4.1LG17g06790 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-08
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRR 92
          AE VGA APVYLSA  EY AAEVLELAGNA RDNK + ++ R
Sbjct: 48 AERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPR 89

[Close]

BLAST of Cp4.1LG17g06790 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-08
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRR 92
          AE VGA APVYLSA  EY AAEVLELAGNA RDNK + ++ R
Sbjct: 48 AERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPR 89

[Close]

BLAST of Cp4.1LG17g06790 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 8.4e-08
Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 24 ATEGNPKRRTRFRSIRGPAFSCLSACAEPVGARAPVYLSAASEYPAAEVLELAGNAIRDN 83
          AT  + K   +F   R   F      AE VGA APVYL+A  EY AAEVLELAGNA RDN
Sbjct: 16 ATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75

Query: 84 KSSIVLRR 92
          K + ++ R
Sbjct: 76 KKTRIVPR 83

[Close]

BLAST of Cp4.1LG17g06790 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRR 92
          AE VGA APVYL+A  EY AAEVLELAGNA RDNK + ++ R
Sbjct: 42 AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83

[Close]

BLAST of Cp4.1LG17g06790 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 50 AEPVGARAPVYLSAASEYPAAEVLELAGNAIRDNKSSIVLRR 92
          AE VGA APVYL+A  EY AAEVLELAGNA RDNK + ++ R
Sbjct: 42 AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g06790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65759	5.3e-07	71.43	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
Q6WV66	5.3e-07	70.45	Histone H2A OS=Mytilus californianus OX=6549 PE=3 SV=3	[more]
Q6WV69	5.3e-07	70.45	Histone H2A OS=Mytilus chilensis OX=173667 PE=3 SV=3	[more]
Q8I0T3	5.3e-07	70.45	Histone H2A OS=Mytilus edulis OX=6550 PE=3 SV=3	[more]
Q6WV88	5.3e-07	70.45	Histone H2A OS=Mytilus galloprovincialis OX=29158 PE=3 SV=3	[more]

BLAST of Cp4.1LG17g06790 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW21243.1	3.79e-08	48.10	Histone H2AX [Vitis vinifera]	[more]
GFU07950.1	5.54e-08	68.89	histone H2A, partial [Trichonephila clavipes]	[more]
KAF5402779.1	1.10e-07	70.45	hypothetical protein PHET_03190 [Paragonimus heterotremus]	[more]
GFU07948.1	1.27e-07	68.89	histone H2A [Trichonephila clavipes]	[more]
AGV13366.1	1.59e-07	64.00	histone 2A, partial [Monalocoris amamianus]	[more]

BLAST of Cp4.1LG17g06790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438CDF0	1.84e-08	48.10	Histone H2A OS=Vitis vinifera OX=29760 GN=HIS2A_2 PE=3 SV=1	[more]
A0A075C6W3	7.70e-08	64.00	Histone H2A (Fragment) OS=Monalocoris amamianus OX=856712 GN=H2A PE=3 SV=1	[more]
V4B254	1.34e-07	70.45	Histone H2A (Fragment) OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_101108 PE=3 SV...	[more]
A0A183BEK3	1.55e-07	69.77	Histone H2A OS=Echinostoma caproni OX=27848 PE=3 SV=1	[more]
A0A3P8LCZ8	1.55e-07	69.77	Histone H2A OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS17637 PE=3 SV=1	[more]

BLAST of Cp4.1LG17g06790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08880.1	5.0e-08	71.43	Histone superfamily protein	[more]
AT1G54690.1	5.0e-08	71.43	gamma histone variant H2AX	[more]
AT5G54640.1	8.4e-08	51.47	Histone superfamily protein	[more]
AT4G27230.1	1.1e-07	69.05	histone H2A 2	[more]
AT4G27230.2	1.1e-07	69.05	histone H2A 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 52..67 score: 61.79 coord: 67..80 score: 75.78 coord: 81..95 score: 36.25
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..99 e-value: 1.3E-12 score: 49.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 52..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g06790.1	Cp4.1LG17g06790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity