Cp4.1LG17g05950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g05950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DNA-directed RNA polymerases II and IV subunit 5A-like
Location	Cp4.1LG17: 6997616 .. 7002328 (+)
RNA-Seq Expression	Cp4.1LG17g05950
Synteny	Cp4.1LG17g05950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGACTTTCGAGTCAAACTTTGGAGGGTATATTAATCGAGGCGTTTCTCTGTACTCTTTTCCCCCAAAATCACCGCTCCTTCTCCCTCCATCTCTCTCCGTCTTCATCGTTCCACAAAACCACCGCCGCCGCCAAACCACGAAATCTCTCTCTCCGTCTCTCCCTTTCTCTATCTTGTAGCCGTAACTCTCTGTTGAGTAAGGTTTGTTTTTGTCTGAGAATTTGTGATCTGAGTCGGGTTCCTGAGTGTAGTTCTTTTTCTAGTTTTTGATGCTGTTGTATGTTGATTTATAAATTTCCCTCGTTTGCGAAGATTCTTGCAGGTTTCGCTCTTGATATTACTTTGCTCTTTCTCTCTGGTTCTTGTATTCTGTTCTGTACTCCTTTGATTACTGGATTTTTCCTTTTTTCTTTTGGTTTCGCTTCATAGCGTTGGTTCCTGTAATTGTAAATATAGTTTAGGGTTGGTATAATCTCTGAGATTGTTTGAGTTGAAGATTGCATTTGTTTTTCCTTTGCCCTTTTGCTGCCTCCTGTTGGCCCAGTCTCTTTAACATACTTTAACTTCAGCTGAGTGTTTCCCAGTGGTTGTTCAGAGGCTTATTATCAACTCATTTGAACTTTTCTGTGGTAATTCTGTGGTGGCTCGACTTTTCTGGGAAGTGATTCTACTCTTGATGTTTTTTGGAAACAAATTGGATTGTTTTCGTCTACTTGTGTTGTTGCCCTCTTCTGGTAACTATGGTTTATCACAAATGTTCGCTAATTGGGAATCCTTTTTGTTACCCCCCTTGGCTTGTAGGGGATACCTCAATTCTTTTTTGTATATCCCCCTCTTAGTAATGAGATATTTTGTTTCCTATTCGAAGAAGGGGGAAAAAGGTAACCAATTTAGAGAGAATGGATTCAAGCCATGGTGGTCAGCTATTTAAGATTTAATATCCTACTAGTTTCTTTGGCAACTTAGTGTAATAGGATCAAACGGTTGTTCTATAAGATATTTTGAGTTTACAAGGTAAATCAATGTGGTCAACTAAGGATATTAAGCTTTTTGGATGCAAAATCATCAGGGTTGGTTGAGGTGTACTGTAGTTGATTCAAACATCCATAGTTATTTAGAATAAAAAGAAGAAAAATGTATATATATATATATGGCATGTGTGAGATCCCACATATGTGAAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTACCGGGCGATGTGACAGTGAGGAGGATGAGCCCCGAAGGGGAGTGGACACGAGGCGGTGTGGTAGCAAGGACGCTGGCCCCAAAGGGAAGTGGATTGAGGAGTCTCACATTGGTTGGAGAAGAGAACGAGTGTCATCGAGGACATTGAGCCCCGAAGGGGGTGGATTGTGAGATCCCACGTTGGTTGAGGAGGAGAATTCTTTATAAGGGTGTGGAAACCTCTACCTAGTAGACGCGTTTTAAAAAACCTTGAGGGAAAGCCCGAAAGTGAAAGCCCAAAGAGGACAATATCTACTAGTGGTGGCCTTGGACTTGGACTAGTACAACATGTCTGAAAATTGTTGTTGCTTGTTTGTGCTTCTCCAGCCTGATTTAATCATTTTCTTTAAATTTTTGTTTCTTTGACTAGGGATTAAGAGCACCTTCCAGCTCTAACCAAATTTGTTTTCTTGTTCTCGCCTTGTCGGTGTCTCCAACTTGTTTTGAATTTTCTGAAAACTATTGTTCTATTACATCCATAACGTGTTCTATAAGCTGTGTTTTGCATTGGTTTTGAAATTTCCAATATGGAACATAATTAATCAGATTGATGTTTCTACTAATGAATTTTACCTCATTTAGAATCTGCATTATCTATTTCTTGTGTACTCATTTGGAGCTTAGGTATTGAGTATTGAATTGTTTGACAATGGCTTAGCTACAGACAATATGGTGCTAGCAGAGGAGGAAATCACCAGGCTTTTCAGAGTTCGAAAAACTGTGTTACAAATGCTTAAAGACCGAGGCTACTTCGTTGGAGACTTTGAGGTTGACATGTCCAGAGAGCAATTTAAGAATAAATATGGTGAAAGCATGAAACGAGAAGATATCGTGATCAACAAAGCGAAGAGAAATGATAGCTCTGATCAGGTATTGTCTCAGACAAGGGGCTGCAAGTTTCTCGTTAATTCTTCTATTTGTTTCCTTCCTCTTATAGTGACTCTTTTCTGTATAGATATACATTTTCTTTCCAGAAGAACCGAAGGTTGGTGTCAAGACAATGAAAACGTATACCAACCGCATGAAATCGGAGAATGTTTTTAGAGCAATATTGGTCGTTCAACAGAATTTGACCCCTTTCGCTCGCACCTGTATAAGTGAAATATCTACCAAATTCCACTTGGAAGTTTTCCAGGTGAAAGCATTTCTTTAACATATTTTATGGAGTGTTTTTAGTTTTTCTACTTTTTAAGAATTGAGTTGTTTTGAGAAACATGAAAAAGTACAAAGACACGAAAGAACAAGTCCAAACAAAAGGTGTAACGGCCCAAGCCCACTGCTAATAGATACTGTTTTCTTTGGGCTTTCCCTTTCGGGATTCCCCTCGTGGTTTTTAAAACGGGTCTACTAGGGAGAGGTTTTCACACCCTTATAAAGAATGTTTCGTTCGCCTCTCCAACCAATGTGGGATCTCACAATCCACCCATTTCGGGTCAACGTTCTTGTTGGCACTCGTTCCTCTCTCCAATTGATGTGGGATCTCACAAAAGGGTCCAAAACAAGTTACAAAAAAAAGGACTCCGATCTAAAAGAACAAGGTCAGGATCATAATTACAAAATGGCTTAGTGACTGAGGCCCAAAGGGAGGCATTAAGCGTAGCAACCTCTTACACCTCCTCACCCGATCTCTTAATCTCTCTAAAAATTCCATTGTACCTTTCCGACCGAACACTTAACAAACAGCAAAGAAGTTAGCCCACATGACTTTGCCTCTTTCCCTAAAAGGGGAAAAGCACCTCATCCAATGACGAACAGTCCTCCCTACCTCGAGCTCCACAATCCCGAAAAGAGGATTTTCACCAATCCCATTGAAACTGAGCAAACTGACAATCTCACAACAAATGATCGAGGTGCTCAAACAAAAAGGAGGAAGAATGCCAAACCACCGGTTCGAGAAGTAAATTAGATGGGTCGTTTTCCAATAATTTGAGGAGAACTTACTCTGAAAACTTAAAATTATGATATCCTCTCTTCCTTTATTCCTTGTTTTGCAATATGAGAATGAAAAATATGAGAGTTTGGGTTAGGAATTACGGACCTCCACAATGGTATGATATTGTCAACTTTGAGCATAAGCTCTCGTGGCTTTGCCTTTTGGGTCCCCAAAATACCTCGTACCAATAGAGAAGTATTCCTTAAACTCATGATCAACCCCTTAATTAGCCGACGTGGGACTCCTCTCCCAACAATCCTAAACAGTTTGCTTGATTCTCTGTCAAAGAATAATAAAACGACCAAGGCAGTTGTTCATTGCTCCTACTGTCTTGGTTCTACATTCATGCTCCTACTGTCTTAGTTTACTTTAGATATAACTTCTCTTTTTCCCTTTCTTCATTTGTTGATGCAGGAAGCAGAATTACTAGTTAATATCAAAGATCACGTTCTTGTTCCTGAGCACCAGTTACTTTCCAATGAAGAGAAAAAAACACTACTGGAGCGATATACCGTGAAAGAAACACAGGTTAGCATTAATTCTTCAGAAAACGTTACATTGTTAGAATGCATCTCTAATATCGATATCGAAATTTGATATGCTCATACATTCTTGATACCGCTTTGGATTTCTACAACGTTATCTCAACTATTGATTAACTACTCGGTTTTCTTTACCTACTATGTTCAAATTTATCTATAACGCCCAAGCTCACTGCTAGCAGATATTGACCTATTTGAGCTTCCCTTCAAGGTTTTTAAAACGTGTCTTCTTGGTCGAGATTTTCACACCCTTATAAAGAATTGGTTTGTTCTCCTCCCCAACCAAGGTGGGATCTCACATTATCAGTGTAATTTTTTTGAGTTTTGGATTTCATTAGATACATAGCATGCTGAGTCCTATGAACTATGTGTTTATTTATTGATTTTGCCCAATAACCGATGTATTCGGGTCTTACTCTGTGCATTGTGTTCATGTCGATTCCTTTAAGTTATCAAGCTTTCTCAGCTTTATAGTTGGAACCTAAAACCTCGTAGAGTATCAACGAACATGTTAAGCTCGTAGCATGGAGACATCCCTTGGGGGTATTAACACATTTTTGTTACAAAATGAATGAGAATCTTATATGGTGTTGCATATTTTGTGCTAGCTACCGCGCATACAGGTGACCGACCCAGTTGCGAGATACTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATAATTATTATTTTGCAACCGAAGATGTAACATATAAATGCACATTGAACTCATCTTTTCAAGTCTTCATCAATTTGGGAACTTTTGTATTTGGAATTTGAATAGGAATATTTATTTATTTTTATTAAAGGGTACTTTTGTAAATTGCCCCTATGGAAAGGATTTTACAAGTAGCCATTTGACTAAACTTGTGTAACATCCCATATCGAGGATATTCAAATTCGATAATCACTTTACCTAT

mRNA sequence

TGTTGACTTTCGAGTCAAACTTTGGAGGGTATATTAATCGAGGCGTTTCTCTGTACTCTTTTCCCCCAAAATCACCGCTCCTTCTCCCTCCATCTCTCTCCGTCTTCATCGTTCCACAAAACCACCGCCGCCGCCAAACCACGAAATCTCTCTCTCCGTCTCTCCCTTTCTCTATCTTGTAGCCGTAACTCTCTGTTGAGTAAGACAATATGGTGCTAGCAGAGGAGGAAATCACCAGGCTTTTCAGAGTTCGAAAAACTGTGTTACAAATGCTTAAAGACCGAGGCTACTTCGTTGGAGACTTTGAGGTTGACATGTCCAGAGAGCAATTTAAGAATAAATATGGTGAAAGCATGAAACGAGAAGATATCGTGATCAACAAAGCGAAGAGAAATGATAGCTCTGATCAGATATACATTTTCTTTCCAGAAGAACCGAAGGTTGGTGTCAAGACAATGAAAACGTATACCAACCGCATGAAATCGGAGAATGTTTTTAGAGCAATATTGGTCGTTCAACAGAATTTGACCCCTTTCGCTCGCACCTGTATAAGTGAAATATCTACCAAATTCCACTTGGAAGTTTTCCAGGAAGCAGAATTACTAGTTAATATCAAAGATCACGTTCTTGTTCCTGAGCACCAGTTACTTTCCAATGAAGAGAAAAAAACACTACTGGAGCGATATACCGTGAAAGAAACACAGCTACCGCGCATACAGGTGACCGACCCAGTTGCGAGATACTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATAATTATTATTTTGCAACCGAAGATGTAACATATAAATGCACATTGAACTCATCTTTTCAAGTCTTCATCAATTTGGGAACTTTTGTATTTGGAATTTGAATAGGAATATTTATTTATTTTTATTAAAGGGTACTTTTGTAAATTGCCCCTATGGAAAGGATTTTACAAGTAGCCATTTGACTAAACTTGTGTAACATCCCATATCGAGGATATTCAAATTCGATAATCACTTTACCTAT

Coding sequence (CDS)

ATGGTGCTAGCAGAGGAGGAAATCACCAGGCTTTTCAGAGTTCGAAAAACTGTGTTACAAATGCTTAAAGACCGAGGCTACTTCGTTGGAGACTTTGAGGTTGACATGTCCAGAGAGCAATTTAAGAATAAATATGGTGAAAGCATGAAACGAGAAGATATCGTGATCAACAAAGCGAAGAGAAATGATAGCTCTGATCAGATATACATTTTCTTTCCAGAAGAACCGAAGGTTGGTGTCAAGACAATGAAAACGTATACCAACCGCATGAAATCGGAGAATGTTTTTAGAGCAATATTGGTCGTTCAACAGAATTTGACCCCTTTCGCTCGCACCTGTATAAGTGAAATATCTACCAAATTCCACTTGGAAGTTTTCCAGGAAGCAGAATTACTAGTTAATATCAAAGATCACGTTCTTGTTCCTGAGCACCAGTTACTTTCCAATGAAGAGAAAAAAACACTACTGGAGCGATATACCGTGAAAGAAACACAGCTACCGCGCATACAGGTGACCGACCCAGTTGCGAGATACTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGA

Protein sequence

MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKRNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTKFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV

Homology

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BLAST of Cp4.1LG17g05950 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 8.6e-92
Identity = 166/205 (80.98%), Postives = 193/205 (94.15%), Query Frame = 0


Query: 2   VLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKR 61
           +L EEE+ RL+R++KT++QML+DRGYF+ D E+ M+++QF  K+G++MKRED+V  KAKR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTKF 121
           ND+SDQ+YIFFP+E KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCISEIS+KF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181
           HLEVFQEAE+LVNIK+HVLVPEHQ+L+ EEKKTLLERYTVKETQLPRIQVTDP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRPSETAGRYVTYRYVV 207
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Cp4.1LG17g05950 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.1e-57
Identity = 109/206 (52.91%), Postives = 154/206 (74.76%), Query Frame = 0


Query: 5   EEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGES-----MKREDIVINKA 64
           EEE  RL+++RKT++Q+  DRGY V   E+D + E+FK ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIST 124
             +D +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH +++ EE   LL RY ++E+QLPRIQ  DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cp4.1LG17g05950 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.1e-57
Identity = 109/206 (52.91%), Postives = 154/206 (74.76%), Query Frame = 0


Query: 5   EEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGES-----MKREDIVINKA 64
           EEE  RL+++RKT++Q+  DRGY V   E+D + E+FK ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIST 124
             +D +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH +++ EE   LL RY ++E+QLPRIQ  DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cp4.1LG17g05950 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 9.0e-57
Identity = 108/206 (52.43%), Postives = 153/206 (74.27%), Query Frame = 0


Query: 5   EEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGES-----MKREDIVINKA 64
           EEE  RL+++RKT++Q+  DRGY V   E+D + E+F+ ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIST 124
             +D +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH +++ EE   LL RY ++E QLPRIQ  DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cp4.1LG17g05950 vs. ExPASy Swiss-Prot
Match: P19388 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=9606 GN=POLR2E PE=1 SV=4)

HSP 1 Score: 220.7 bits (561), Expect = 1.5e-56
Identity = 109/206 (52.91%), Postives = 152/206 (73.79%), Query Frame = 0


Query: 5   EEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGES-----MKREDIVINKA 64
           EEE  RL+++RKT++Q+  DRGY V   E+D + E+FK + G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIST 124
             +D +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH +++ EE   LL RY ++E QLPRIQ  DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Cp4.1LG17g05950 vs. NCBI nr
Match: XP_022959553.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959554.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959555.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_023004795.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004796.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004797.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023513561.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo] >XP_023513563.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402 bits (1034), Expect = 2.49e-141
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cp4.1LG17g05950 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391 bits (1004), Expect = 9.34e-137
Identity = 196/206 (95.15%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKREDIVINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cp4.1LG17g05950 vs. NCBI nr
Match: XP_022953770.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata])

HSP 1 Score: 390 bits (1003), Expect = 1.33e-136
Identity = 195/206 (94.66%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKRED+VINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cp4.1LG17g05950 vs. NCBI nr
Match: XP_022143609.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia])

HSP 1 Score: 388 bits (996), Expect = 1.55e-135
Identity = 195/206 (94.66%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDR YFVGDFE+DMSREQFK+KYGE+MKREDIVINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cp4.1LG17g05950 vs. NCBI nr
Match: XP_022142704.1 (DNA-directed RNA polymerases II and IV subunit 5A [Momordica charantia] >XP_022142705.1 DNA-directed RNA polymerases II and IV subunit 5A [Momordica charantia])

HSP 1 Score: 385 bits (988), Expect = 2.57e-134
Identity = 192/206 (93.20%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVLA+EEITRLFR+RKTVLQMLKDRGYFVGDFE+ MSREQF+NKYGESMKRED+VINKAK
Sbjct: 1   MVLADEEITRLFRIRKTVLQMLKDRGYFVGDFEIGMSREQFRNKYGESMKREDLVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIYIFFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EIS+K
Sbjct: 61  RNDSSDQIYIFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIGEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAEL+VNIKDHVL+PEHQLL+ EEKKTLLERYTVKETQLPRIQVTDP+ARYYG
Sbjct: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLTTEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cp4.1LG17g05950 vs. ExPASy TrEMBL
Match: A0A6J1KT45 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111497988 PE=3 SV=1)

HSP 1 Score: 402 bits (1034), Expect = 1.21e-141
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cp4.1LG17g05950 vs. ExPASy TrEMBL
Match: A0A6J1H699 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111460591 PE=3 SV=1)

HSP 1 Score: 402 bits (1034), Expect = 1.21e-141
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cp4.1LG17g05950 vs. ExPASy TrEMBL
Match: A0A6J1JRV4 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111488357 PE=3 SV=1)

HSP 1 Score: 391 bits (1004), Expect = 4.52e-137
Identity = 196/206 (95.15%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKREDIVINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cp4.1LG17g05950 vs. ExPASy TrEMBL
Match: A0A6J1GQK9 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111456196 PE=3 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 6.42e-137
Identity = 195/206 (94.66%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKRED+VINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cp4.1LG17g05950 vs. ExPASy TrEMBL
Match: A0A6J1CPU1 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX=3673 GN=LOC111013465 PE=3 SV=1)

HSP 1 Score: 388 bits (996), Expect = 7.50e-136
Identity = 195/206 (94.66%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDR YFVGDFE+DMSREQFK+KYGE+MKREDIVINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206
           LKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Cp4.1LG17g05950 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 337.8 bits (865), Expect = 6.1e-93
Identity = 166/205 (80.98%), Postives = 193/205 (94.15%), Query Frame = 0


Query: 2   VLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKR 61
           +L EEE+ RL+R++KT++QML+DRGYF+ D E+ M+++QF  K+G++MKRED+V  KAKR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTKF 121
           ND+SDQ+YIFFP+E KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCISEIS+KF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181
           HLEVFQEAE+LVNIK+HVLVPEHQ+L+ EEKKTLLERYTVKETQLPRIQVTDP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRPSETAGRYVTYRYVV 207
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Cp4.1LG17g05950 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 184.5 bits (467), Expect = 8.6e-47
Identity = 97/206 (47.09%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 5   EEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESM---KREDIVINKAKR 64
           ++EITR+F+VR+TVLQML+DRGY + + ++++ RE+F  ++ ++M    +E + ++  K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NDSSDQIYIFFPEEPKVGVKTM-KTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 124
            + +D+IY+F+PE PKVGV  + K    +M+ + V R I+VV   +T  AR  +SE++  
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124

Query: 125 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 184
             +EVF+EAEL+ NI +H LV ++ +L ++ KK LL  YTV++TQLPRI VTDP+ARYYG
Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYG 184

Query: 185 LKRGQVVKIIRPSETAGRYVTYRYVV 207
           LKRGQVVKI R   T+  Y TYR+ V
Sbjct: 185 LKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of Cp4.1LG17g05950 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 134.8 bits (338), Expect = 7.8e-32
Identity = 76/200 (38.00%), Postives = 126/200 (63.00%), Query Frame = 0


Query: 7   EITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKRNDSSD 66
           E  + +  R+T ++ML+DRGY V D ++++S +QF+  YGE    + + I+   R DSS 
Sbjct: 20  ECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSK 79

Query: 67  QIYIFFPEEPKVGVKTMKTY-TNRMKSENVFRAILVVQQNLTPFARTCISEISTKFHLEV 126
           +I + F     V V  M+    + +  EN+   ILV+Q ++T  A   +   S  F +E+
Sbjct: 80  KISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS--FKVEL 139

Query: 127 FQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQ 186
           F+  +LLVN+  HVL P+HQ+L+++EK++LL++++++E QLPR+   DP+ RYYGL+ GQ
Sbjct: 140 FEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQ 199

Query: 187 VVKIIRPSETAGRYVTYRYV 206
           V+K+    E +  +VTYR V
Sbjct: 200 VMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Cp4.1LG17g05950 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-31
Identity = 79/204 (38.73%), Postives = 123/204 (60.29%), Query Frame = 0


Query: 3   LAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKRN 62
           L+ EE  R +  R+  LQML+DRGY V D ++++S   F+  YGE    + + I+   R+
Sbjct: 20  LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79

Query: 63  DSSDQIYIFFPEEPKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCISEISTKF 122
           DS+ ++ I F     V V  +++   + +  E +   ILV+Q ++T  A   I   S  F
Sbjct: 80  DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--F 139

Query: 123 HLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 182
            +E+FQ  +LLVNI  H L P+HQ+L++EEK TLL++++++E QLPRI   D + RYYGL
Sbjct: 140 KVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGL 199

Query: 183 KRGQVVKIIRPSETAGRYVTYRYV 206
           ++GQVVK+    E    +V +R V
Sbjct: 200 EKGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Cp4.1LG17g05950 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 114.8 bits (286), Expect = 8.4e-26
Identity = 67/201 (33.33%), Postives = 115/201 (57.21%), Query Frame = 0


Query: 7   EITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKRNDSSD 66
           E  R +  R T  +ML+DRGY V + E+ ++  +F++ +GE  + E + I    R+D   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYIFFPEEPKVGVKTMKTYTNRMKSE-NVFRAILVVQQNLTPFARTCISEISTKFHLEV 126
           +I + F     + VK+++    ++ +   +   ILV+Q  +  FA+  ++  +  F +E 
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALT--TFPFTVET 154

Query: 127 FQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQ 186
           F   +LLVNI  H+  P+ ++L+ EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ Q
Sbjct: 155 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQ 214

Query: 187 VVKIIRPSETAGRYVTYRYVV 207
           VVKI    E  G +VTYR ++
Sbjct: 215 VVKITYSKEPVGDFVTYRCII 233

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g05950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	8.6e-92	80.98	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
Q80UW8	3.1e-57	52.91	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
B0BNE2	3.1e-57	52.91	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
Q5R587	9.0e-57	52.43	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96...	[more]
P19388	1.5e-56	52.91	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=96...	[more]

BLAST of Cp4.1LG17g05950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959553.1	2.49e-141	100.00	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_...	[more]
XP_022991826.1	9.34e-137	95.15	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_02...	[more]
XP_022953770.1	1.33e-136	94.66	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata]	[more]
XP_022143609.1	1.55e-135	94.66	DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia]	[more]
XP_022142704.1	2.57e-134	93.20	DNA-directed RNA polymerases II and IV subunit 5A [Momordica charantia] >XP_0221...	[more]

BLAST of Cp4.1LG17g05950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KT45	1.21e-141	100.00	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1H699	1.21e-141	100.00	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]
A0A6J1JRV4	4.52e-137	95.15	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1GQK9	6.42e-137	94.66	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]
A0A6J1CPU1	7.50e-136	94.66	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX...	[more]

BLAST of Cp4.1LG17g05950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	6.1e-93	80.98	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	8.6e-47	47.09	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	7.8e-32	38.00	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	3.0e-31	38.73	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	8.4e-26	33.33	RNA polymerase II fifth largest subunit, E	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 3..130 e-value: 1.1E-47 score: 163.6
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 5..134
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 133..205 e-value: 7.3E-35 score: 118.7
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 131..206 e-value: 5.2E-35 score: 120.9
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 131..206
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..90 e-value: 8.3E-32 score: 109.7
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 1..206 e-value: 2.6E-91 score: 302.7
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 1..206
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 1..206
IPR020608	RNA polymerase, subunit H/Rpb5, conserved site	PROSITE	PS01110	RNA_POL_H_23KD	coord: 138..151
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 133..206 score: 22.870682

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g05950.1	Cp4.1LG17g05950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity