Cp4.1LG17g05820 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g05820
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger CCCH domain-containing protein 39-like
Location	Cp4.1LG17: 4739453 .. 4742143 (-)
RNA-Seq Expression	Cp4.1LG17g05820
Synteny	Cp4.1LG17g05820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTCATTTCTATTTTTTTTAAACCGACGATAAGTGCACTTTTGAACTTTTTAAAATAATTGAAGGATACTAATAAAAAATTTTAACGTTTAAGGGTATTTTTAAAACATTATTAAAAATTTGAGGGTGTTTTTAAAATAAAATACTAATGATTTTTTTTTATCGCAACTAATAATAAATATATTTTATAGACTCTACTTTTAAAGTTTTAAAAGTATAATCGGAAACTTTTAATTATGGTTGAAAATTTTAAATTTACTTATTTTTTATTTTTTATTAAAAAAAAAAACTTTTAAATTACAGAAGAAAATTAAGGAAAGAATGGAGGTCTTATATAAGAAGAGACTCCAAACAGTTCAAACATTAGACCGTGAAACGAGTCGGAAGGCGAAGCGACATACTCAAAATCGAAGCGGCTACTTCCGATTATGATGGGAATTCGTCGTTGAATCTCACGGCGGAGGCCTTTCATCTTCTCCGCTGTGGTTTCCGATCAACGCCTAGGGTTTAACTCTGTAAATATTGTACAAATGTCTCTTATACCTGTCAATTAATTGGATGTATCAATTGCCATTTCAAATTTCATCGATTTCTTCAAAACTTGTGGACTTAGGGCTTGGTGTCTCTTCTGGAAGTTTTGGACAGTTCTTCATCAGGTATCTCTCTGAGTTTTCCATTCTTTTGCGCCAAATTTGGACTCCTCAACTTTAGCTGCATGTGTCAATTTTTTATTCGCTTGCGATTTGAAGATATTGACAATGTACAGAGATTTAAGCGATTTGTCTATTGTTACTTTTGGAAAAGAAATGTTGCTTAGAACCTACTGTTTTTATCAGTTCAAAGAATTTGAAACTTGAAATTGGATGGTTTGGCCCTTGAAATGAGTGATCCTTATCCTTTTCACCAAGTTACTCCTCCAGACCATGAGGCTCGTGGCGTTTGGCCGCCATTGCCTCCTCGATATACTGTTGGTCGATTCCCATCATTTTATCGGCCTACGATGTCGGAAGTTGTACCGAGTAGGGTAATGCCTTCAAATTTTGAGATTCCACAATGGAACAATGTGAACATTGGATTACATGACAATGAGTTGGAGTGGAGATATGCACTTGCTTCTAATGATCATACTCGTGGATGGTTACCTTCTTGGCGAGGAATTGATTTCCATGAAAATCGATTACCTGAGTGTCCGATTCTTAACAATCGGACTGGAATGTCGACTGAAATGAAAGTTTGCAGACAATTCCAACGTAGGGGGAAATGTGCATATGGTGATCAGTGTCGTTTCCTTCATAAAATTCCTGAGAACACTAAGGATTTTGGCTTCTCCACCCAGAACCATGAGGTTAGAGCAGTAGCTTCTGGTCATGTTATGGATGGAAAAAGTATGTTTGATCAATTTGAAGAAGTCAGATCAAAAGTACAAACGAAAATTGTTGCCCGCAGTGAGATTCCAATGCCTGTAAATTGCAAAACAAGGCTCTGTTACCTCTGGCAGACAACTGGTCACTGCTCATATGGGGAGGTTTGTCGCTTCGCTCATGGAGAAGCAGGTATTTACAGCCTTTTAGTCTACTAATCTTGTACTCTTTCGTTTCCAGTACCATGTCATATGTTTTCAAGTGATTTATCTATTTTCTTTTGCCATTTTCTTATCCATGCAAGTTATTTCATAAATTACTTCCTTGAACTTTTTGGGATAAATAACCTGGCTTGATTCAAATGAATCCTCTTTCCTTTTGAGTTTTAATAACGAGGTGAGAGATTCGAATGTTTGACCGCTTGGTAAAGAATATATGCCTTAAACCTTAGCCTTTTTGTTGGGTGATTAACTTTTGTAGGGGGAAGGGGTTCTATTTGCATAATGAAAATGGTGGGCTATATAGACTTTGAGACCTTTCTAAGCATAGGTTAGATATTGTTCCTCAGAACATGGAAACATTAAACGTTGATTACTTAACCATACATATAAATGAACATTCTAACACTGTAAGATGCAATGTCAACCATGTGGGTATACTCATTTATAAATGGTGATTGACGTGTTCATGAAATCAAAACCTGGTTATTGCCAAACTACATGCATTGATATTGCCCTTGTATTCTTTGTTTTGGGGGGAAAATAGAATTACAGAAGCTCGAGTCGTGCAGTGCATCGGAACGTGGCAGAGTAGGTGGAGCCTCTGCAACAACTAAAGCTGCTGCCGCAGCTGGATTAAGGTGCAGCAGAGGAATTGGAACCGACTGTAAGAATAAAGGATCATCAAGAATGAAGCAACTCTTTAAATCAAAGGAGCATAAGAAGTTGATTGGCATTTACGCTGACTGGCTTGAGAATTGAGTATTCTGCATGACTTGCAGTACAAAGATTTGACCAAATACTACTGGGGCGTGTTCCAATTCTCACAAGTGGCTGAGAACATTAAGGTTCTTCTAGAACCCCCTAAGTGCATTTTGACATTTAAATGAATATAGGAAAATAGATATTGTTCTTAACAAGAATATGATTTTTTTTTTTTTTTTCTCTTCATTCACAACTTTGGAATATAGATATATGGTATTGCATCTCTCAAACTGACAGAGATGGAAATAGAAGTAGAAGTATGAAGATTTGAAGTCTTATGTCTAAATGAAAATTGTTTCGTTCATAAATGATTTTAGCCGACCATTGAAATGATTGATAATAGTT

mRNA sequence

AAATTTCATTTCTATTTTTTTTAAACCGACGATAAGTGCACTTTTGAACTTTTTAAAATAATTGAAGGATACTAATAAAAAATTTTAACGTTTAAGGGTATTTTTAAAACATTATTAAAAATTTGAGGGTGTTTTTAAAATAAAATACTAATGATTTTTTTTTATCGCAACTAATAATAAATATATTTTATAGACTCTACTTTTAAAGTTTTAAAAGTATAATCGGAAACTTTTAATTATGGTTGAAAATTTTAAATTTACTTATTTTTTATTTTTTATTAAAAAAAAAAACTTTTAAATTACAGAAGAAAATTAAGGAAAGAATGGAGGTCTTATATAAGAAGAGACTCCAAACAGTTCAAACATTAGACCGTGAAACGAGTCGGAAGGCGAAGCGACATACTCAAAATCGAAGCGGCTACTTCCGATTATGATGGGAATTCGTCGTTGAATCTCACGGCGGAGGCCTTTCATCTTCTCCGCTGTGGTTTCCGATCAACGCCTAGGGTTTAACTCTGTAAATATTGTACAAATGTCTCTTATACCTGTCAATTAATTGGATGTATCAATTGCCATTTCAAATTTCATCGATTTCTTCAAAACTTGTGGACTTAGGGCTTGGTGTCTCTTCTGGAAGTTTTGGACAGTTCTTCATCAGGTATCTCTCTGAGTTTTCCATTCTTTTGCGCCAAATTTGGACTCCTCAACTTTAGCTGCATGTGTCAATTTTTTATTCGCTTGCGATTTGAAGATATTGACAATGTACAGAGATTTAAGCGATTTGTCTATTGTTACTTTTGGAAAAGAAATGTTGCTTAGAACCTACTGTTTTTATCAGTTCAAAGAATTTGAAACTTGAAATTGGATGGTTTGGCCCTTGAAATGAGTGATCCTTATCCTTTTCACCAAGTTACTCCTCCAGACCATGAGGCTCGTGGCGTTTGGCCGCCATTGCCTCCTCGATATACTGTTGGTCGATTCCCATCATTTTATCGGCCTACGATGTCGGAAGTTGTACCGAGTAGGGTAATGCCTTCAAATTTTGAGATTCCACAATGGAACAATGTGAACATTGGATTACATGACAATGAGTTGGAGTGGAGATATGCACTTGCTTCTAATGATCATACTCGTGGATGGTTACCTTCTTGGCGAGGAATTGATTTCCATGAAAATCGATTACCTGAGTGTCCGATTCTTAACAATCGGACTGGAATGTCGACTGAAATGAAAGTTTGCAGACAATTCCAACGTAGGGGGAAATGTGCATATGGTGATCAGTGTCGTTTCCTTCATAAAATTCCTGAGAACACTAAGGATTTTGGCTTCTCCACCCAGAACCATGAGGTTAGAGCAGTAGCTTCTGGTCATGTTATGGATGGAAAAAGTATGTTTGATCAATTTGAAGAAGTCAGATCAAAAGTACAAACGAAAATTGTTGCCCGCAGTGAGATTCCAATGCCTGTAAATTGCAAAACAAGGCTCTGTTACCTCTGGCAGACAACTGGTCACTGCTCATATGGGGAGGTTTGTCGCTTCGCTCATGGAGAAGCAGAATTACAGAAGCTCGAGTCGTGCAGTGCATCGGAACGTGGCAGAGTAGGTGGAGCCTCTGCAACAACTAAAGCTGCTGCCGCAGCTGGATTAAGGTGCAGCAGAGGAATTGGAACCGACTGTAAGAATAAAGGATCATCAAGAATGAAGCAACTCTTTAAATCAAAGGAGCATAAGAAGTTGATTGGCATTTACGCTGACTGGCTTGAGAATTGAGTATTCTGCATGACTTGCAGTACAAAGATTTGACCAAATACTACTGGGGCGTGTTCCAATTCTCACAAGTGGCTGAGAACATTAAGGTTCTTCTAGAACCCCCTAAGTGCATTTTGACATTTAAATGAATATAGGAAAATAGATATTGTTCTTAACAAGAATATGATTTTTTTTTTTTTTTTCTCTTCATTCACAACTTTGGAATATAGATATATGGTATTGCATCTCTCAAACTGACAGAGATGGAAATAGAAGTAGAAGTATGAAGATTTGAAGTCTTATGTCTAAATGAAAATTGTTTCGTTCATAAATGATTTTAGCCGACCATTGAAATGATTGATAATAGTT

Coding sequence (CDS)

ATGAGTGATCCTTATCCTTTTCACCAAGTTACTCCTCCAGACCATGAGGCTCGTGGCGTTTGGCCGCCATTGCCTCCTCGATATACTGTTGGTCGATTCCCATCATTTTATCGGCCTACGATGTCGGAAGTTGTACCGAGTAGGGTAATGCCTTCAAATTTTGAGATTCCACAATGGAACAATGTGAACATTGGATTACATGACAATGAGTTGGAGTGGAGATATGCACTTGCTTCTAATGATCATACTCGTGGATGGTTACCTTCTTGGCGAGGAATTGATTTCCATGAAAATCGATTACCTGAGTGTCCGATTCTTAACAATCGGACTGGAATGTCGACTGAAATGAAAGTTTGCAGACAATTCCAACGTAGGGGGAAATGTGCATATGGTGATCAGTGTCGTTTCCTTCATAAAATTCCTGAGAACACTAAGGATTTTGGCTTCTCCACCCAGAACCATGAGGTTAGAGCAGTAGCTTCTGGTCATGTTATGGATGGAAAAAGTATGTTTGATCAATTTGAAGAAGTCAGATCAAAAGTACAAACGAAAATTGTTGCCCGCAGTGAGATTCCAATGCCTGTAAATTGCAAAACAAGGCTCTGTTACCTCTGGCAGACAACTGGTCACTGCTCATATGGGGAGGTTTGTCGCTTCGCTCATGGAGAAGCAGAATTACAGAAGCTCGAGTCGTGCAGTGCATCGGAACGTGGCAGAGTAGGTGGAGCCTCTGCAACAACTAAAGCTGCTGCCGCAGCTGGATTAAGGTGCAGCAGAGGAATTGGAACCGACTGTAAGAATAAAGGATCATCAAGAATGAAGCAACTCTTTAAATCAAAGGAGCATAAGAAGTTGATTGGCATTTACGCTGACTGGCTTGAGAATTGA

Protein sequence

MSDPYPFHQVTPPDHEARGVWPPLPPRYTVGRFPSFYRPTMSEVVPSRVMPSNFEIPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSASERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN

Homology

[Close]

BLAST of Cp4.1LG17g05820 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.3e-12
Identity = 61/219 (27.85%), Postives = 96/219 (43.84%), Query Frame = 0


Query: 104 PILNNR----TGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAV 163
           P++NN       +   MK+CR+F    +C YGD+C F+H+     ++     +   V +V
Sbjct: 170 PVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISV 229

Query: 164 ASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMP-----------VNCKTRLCYLWQTT 223
                  G +  DQ  +  S +  ++  +  IP+P           V  KTRLC  +  T
Sbjct: 230 -------GATAADQPSDTASNL-IEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDIT 289

Query: 224 GHCSYGEVCRFAHGEAELQKLESCSASERGRVGGAS----------ATTKAAAAAGLRCS 283
           G C +G+ C FAHG+AEL        +  GRV G +          A   A  A  ++  
Sbjct: 290 GQCPFGDKCHFAHGQAELH-------NSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPI 349

Query: 284 RGIGTDCK--NKGSSRMKQLFKSKEHKKLIGIYADWLEN 296
             +  D    N+   R K L K  + KK+  IY DW+++
Sbjct: 350 TQVTADSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDD 373

[Close]

BLAST of Cp4.1LG17g05820 vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-09
Identity = 55/210 (26.19%), Postives = 85/210 (40.48%), Query Frame = 0


Query: 110 TGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKS 169
           +G + + + C++F     C YGD C FLH   E +K         E  A++    + G  
Sbjct: 166 SGRAYKGRHCKKFYTDEGCPYGDACTFLH--DEQSK-------ARESVAISLSPSVGGGG 225

Query: 170 MFDQFEEVRSKVQTKIVARSEIPM--PVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQ 229
               +    +   +   A    PM  P N KTR+C  W+ TG+C +G  C FAHG AEL 
Sbjct: 226 GGGSYNSAAAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELH 285

Query: 230 KL-----------ESCSASERGRVGGASATTKAAAAA------------GLRCSRGIGTD 289
           K             + +   +  V  A A  + AAA+            G++  R   T 
Sbjct: 286 KYGGGLVDIDSRDAAATPDSKQAVVSAKAPAETAAASTTVLPHADVYHLGVQAQR--STI 345

Query: 290 CKNKGSSRMKQLFKSKEHKKLIGIYADWLE 295
              +     + + K K   K+  IY DW++
Sbjct: 346 AGQRSGQVQRPIQKWKGPDKISRIYGDWID 364

[Close]

BLAST of Cp4.1LG17g05820 vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.8e-09
Identity = 39/150 (26.00%), Postives = 61/150 (40.67%), Query Frame = 0


Query: 97  ENRLPECPILNNRTGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKD-----FGFST 156
           E ++P        +G S + + C++F     C YG+ C FLH      ++      G   
Sbjct: 156 EFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGG 215

Query: 157 QNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHC 216
                   + G  + G         +     +   +  +I  P N KTR+C  W+ TG+C
Sbjct: 216 YGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYC 275

Query: 217 SYGEVCRFAHGEAELQKLESCSASERGRVG 242
            +G  C FAHG AEL +       E G+ G
Sbjct: 276 PFGAKCHFAHGAAELHRFGGGLVEEEGKDG 305

[Close]

BLAST of Cp4.1LG17g05820 vs. ExPASy Swiss-Prot
Match: Q7F8R0 (Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0194200 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-06
Identity = 35/121 (28.93%), Postives = 49/121 (40.50%), Query Frame = 0


Query: 109 RTGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQ-NHEVRAVASGHVMDG 168
           +TG+ ++ K C +F     C +G+ C FLH  P   +     T       A   G +  G
Sbjct: 29  QTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPGGYQAVAKMTNLGGPAIAPPPGRMPMG 88

Query: 169 KSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQ 228
            ++ D                   P     KTRLC  + T   C +G+ C FAHGE EL 
Sbjct: 89  NAVPDG------------------PPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGERELG 131

[Close]

BLAST of Cp4.1LG17g05820 vs. ExPASy Swiss-Prot
Match: Q69XQ3 (Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0618100 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-06
Identity = 35/124 (28.23%), Postives = 52/124 (41.94%), Query Frame = 0


Query: 107 NNRTGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVAS--GHV 166
           +++ G+ +++K C +F     C +G  C FLH  P   +     T +H   AVA+  G +
Sbjct: 26  SSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQAAAKMT-SHGGTAVAAPPGRM 85

Query: 167 MDGKSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEA 226
             G                        P   + KTR+C  + T   C +G  C FAHGE 
Sbjct: 86  PLGP------------------GAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGER 130

Query: 227 ELQK 229
           EL K
Sbjct: 146 ELGK 130

[Close]

BLAST of Cp4.1LG17g05820 vs. NCBI nr
Match: XP_023513806.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 625 bits (1613), Expect = 1.27e-226
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPLPPRYTVGRFPSFYRPTMSEVVPSRVMPSNFEIPQWN 60
           MSDPYPFHQVTPPDHEARGVWPPLPPRYTVGRFPSFYRPTMSEVVPSRVMPSNFEIPQWN
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLPPRYTVGRFPSFYRPTMSEVVPSRVMPSNFEIPQWN 60

Query: 61  NVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTEMKVCR 120
           NVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTEMKVCR
Sbjct: 61  NVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTEMKVCR 120

Query: 121 QFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFEEVRSK 180
           QFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFEEVRSK
Sbjct: 121 QFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFEEVRSK 180

Query: 181 VQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSASERGRV 240
           VQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSASERGRV
Sbjct: 181 VQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSASERGRV 240

Query: 241 GGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 295
           GGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN
Sbjct: 241 GGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 295

[Close]

BLAST of Cp4.1LG17g05820 vs. NCBI nr
Match: XP_022964047.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata])

HSP 1 Score: 605 bits (1559), Expect = 2.62e-218
Identity = 286/300 (95.33%), Postives = 293/300 (97.67%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPL-----PPRYTVGRFPSFYRPTMSEVVPSRVMPSNFE 60
           MSDPYPFHQVTPPDHEARGVWPPL     PPRYTVGRFPSFY+PTMSE+VPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTE 120
           IPQWNNV+IGLHDNELEWRYALASNDHTRGWLPSWRGI+FHENRLPECPI+N+RTGMSTE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMSTE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFG S+QNHEVRAVASGHVMDGKSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSAS 240
           EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCS S
Sbjct: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 295
           ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300

[Close]

BLAST of Cp4.1LG17g05820 vs. NCBI nr
Match: KAG6593433.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 604 bits (1558), Expect = 3.72e-218
Identity = 285/300 (95.00%), Postives = 293/300 (97.67%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPL-----PPRYTVGRFPSFYRPTMSEVVPSRVMPSNFE 60
           MSDPYPFHQVTPPDHEARGVWPPL     PPRYTVGRFPSFY+PTMSE+VPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTE 120
           IPQWNNV+IGLHDNELEWRYALASNDHTRGWLPSWRGI+FHENRLPECPI+N+RTGMSTE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMSTE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFG S+QNHE+RAVASGHVMDGKSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEIRAVASGHVMDGKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSAS 240
           EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCS S
Sbjct: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 295
           ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300

[Close]

BLAST of Cp4.1LG17g05820 vs. NCBI nr
Match: KAG7025772.1 (Zinc finger CCCH domain-containing protein 39 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 602 bits (1553), Expect = 2.15e-217
Identity = 285/300 (95.00%), Postives = 292/300 (97.33%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPL-----PPRYTVGRFPSFYRPTMSEVVPSRVMPSNFE 60
           MSDPYPFHQVTPPDHEARGVWPPL     PPRYTVGRFPSFY+PTMSE+VPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTE 120
           IPQWNNV+IGLHDNELEWRYALASNDHTRGWLPSWRGI+FHENRLP CPI+N+RTGMSTE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFG S+QNHEVRAVASGHVMDGKSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSAS 240
           EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCS S
Sbjct: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 295
           ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300

[Close]

BLAST of Cp4.1LG17g05820 vs. NCBI nr
Match: XP_023000378.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima])

HSP 1 Score: 587 bits (1512), Expect = 3.98e-211
Identity = 280/301 (93.02%), Postives = 291/301 (96.68%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPL-----PPRYTVGRFPSFYRPTMSEVVPSRVMPSNFE 60
           MSDPYPFHQVTP DHEARGVWPPL     PPRY++GRFPSFY+PTMSEVVPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPSDHEARGVWPPLRPPPWPPRYSIGRFPSFYQPTMSEVVPSRVMPSNFE 60

Query: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTE 120
           IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGI+FHENRLPECPI+N+RTGM+TE
Sbjct: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMATE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFG+S+QNHEVRAVASGHVMD KSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGYSSQNHEVRAVASGHVMDRKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSAS 240
           EVRSKVQTKIVARSEIP+PV+CKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCS S
Sbjct: 181 EVRSKVQTKIVARSEIPVPVSCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSPS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKK-LIGIYADWLE 295
           ERGRVGGASATTKAAAAAGLRCSRGIGTD KNKGSSRMKQLFKSKEHKK LIGIYADWLE
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDGKNKGSSRMKQLFKSKEHKKKLIGIYADWLE 300

[Close]

BLAST of Cp4.1LG17g05820 vs. ExPASy TrEMBL
Match: A0A6J1HGS0 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111464190 PE=4 SV=1)

HSP 1 Score: 605 bits (1559), Expect = 1.27e-218
Identity = 286/300 (95.33%), Postives = 293/300 (97.67%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPL-----PPRYTVGRFPSFYRPTMSEVVPSRVMPSNFE 60
           MSDPYPFHQVTPPDHEARGVWPPL     PPRYTVGRFPSFY+PTMSE+VPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTE 120
           IPQWNNV+IGLHDNELEWRYALASNDHTRGWLPSWRGI+FHENRLPECPI+N+RTGMSTE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMSTE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFG S+QNHEVRAVASGHVMDGKSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSAS 240
           EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCS S
Sbjct: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 295
           ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300

[Close]

BLAST of Cp4.1LG17g05820 vs. ExPASy TrEMBL
Match: A0A6J1KMG0 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111494633 PE=4 SV=1)

HSP 1 Score: 587 bits (1512), Expect = 1.92e-211
Identity = 280/301 (93.02%), Postives = 291/301 (96.68%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPL-----PPRYTVGRFPSFYRPTMSEVVPSRVMPSNFE 60
           MSDPYPFHQVTP DHEARGVWPPL     PPRY++GRFPSFY+PTMSEVVPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPSDHEARGVWPPLRPPPWPPRYSIGRFPSFYQPTMSEVVPSRVMPSNFE 60

Query: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTE 120
           IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGI+FHENRLPECPI+N+RTGM+TE
Sbjct: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMATE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFG+S+QNHEVRAVASGHVMD KSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGYSSQNHEVRAVASGHVMDRKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSAS 240
           EVRSKVQTKIVARSEIP+PV+CKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCS S
Sbjct: 181 EVRSKVQTKIVARSEIPVPVSCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSPS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKK-LIGIYADWLE 295
           ERGRVGGASATTKAAAAAGLRCSRGIGTD KNKGSSRMKQLFKSKEHKK LIGIYADWLE
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDGKNKGSSRMKQLFKSKEHKKKLIGIYADWLE 300

[Close]

BLAST of Cp4.1LG17g05820 vs. ExPASy TrEMBL
Match: A0A0A0KBW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433210 PE=4 SV=1)

HSP 1 Score: 334 bits (857), Expect = 5.37e-112
Identity = 184/282 (65.25%), Postives = 204/282 (72.34%), Query Frame = 0


Query: 16  EARGVWPPLPPRYTVGRFPSFYRPTMSEVVPSRVMPSNFEIPQWNNVNIGLHDNELEWRY 75
           EARG WP LPP Y   R  SFYRPTMS VV S  MPSNF IP WNN NIG +++E    Y
Sbjct: 10  EARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIG-YEHEFGRSY 69

Query: 76  ALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTEMKVCRQFQRRGKCAYGDQCR 135
               ND TR  LPS  GI+F E +L E   ++N    S EMKVCR FQRR KCAYGDQCR
Sbjct: 70  TPGFND-TRRMLPSGPGIEFREGQLSERWNVDN----SNEMKVCRLFQRRKKCAYGDQCR 129

Query: 136 FLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPV 195
           FLH+IP+ T+D G S+QN+EV  VA GHVMD  S FDQ EEVRSKVQTK+V R EIP P+
Sbjct: 130 FLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIPKPL 189

Query: 196 NCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSASERGRVGGAS--ATTKAAAAA 255
             K+R CY WQTTG C YG  CRFAHGEAELQKLE C+AS+RG VGG S  ATT AA  A
Sbjct: 190 IAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAAVEA 249

Query: 256 GLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 295
           GLR SR IGTDCKNKG  R+ Q F+SKE KKLIGIYADWLE+
Sbjct: 250 GLRSSREIGTDCKNKGP-RINQFFESKESKKLIGIYADWLED 284

[Close]

BLAST of Cp4.1LG17g05820 vs. ExPASy TrEMBL
Match: A0A1S4E329 (zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103499783 PE=4 SV=1)

HSP 1 Score: 310 bits (795), Expect = 9.85e-103
Identity = 176/282 (62.41%), Postives = 197/282 (69.86%), Query Frame = 0


Query: 16  EARGVWPPLPPRYTVGRFPSFYRPTMSEVVPSRVMPSNFEIPQWNNVNIGLHDNELEWRY 75
           EARG WP LPP Y   R  SFYR TMS  V S  MPSNF IP WNN NIG +++EL   Y
Sbjct: 10  EARGNWPLLPPPYPDPRNQSFYRSTMSGAVSSWRMPSNFGIPPWNNWNIG-YEHELGRSY 69

Query: 76  ALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTEMKVCRQFQRRGKCAYGDQCR 135
               ND T   LPS  GI+FHE +L E   +++    S EMKVCR FQRR KCAYGDQCR
Sbjct: 70  RPGFND-THRMLPSRPGIEFHEGQLSERWNVDD----SNEMKVCRLFQRRKKCAYGDQCR 129

Query: 136 FLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPV 195
           FLH+IPE T+D G S+QN+EVR          +S FDQ EEVRSKVQTK+V R EIP P+
Sbjct: 130 FLHEIPEKTRDSGSSSQNYEVR----------RSGFDQLEEVRSKVQTKVVVRGEIPKPL 189

Query: 196 NCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSASERGRVGG--ASATTKAAAAA 255
             K R CY WQTTG C YG  CRFAHGEAELQKLE CSAS+RG VGG  A+ATT A   A
Sbjct: 190 IGKPRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCSASQRGSVGGVSATATTTAPVEA 249

Query: 256 GLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 295
           GLR S+ IGTDCKNKG  R+ Q F+SKE KKLIGIYADWLE+
Sbjct: 250 GLRSSKEIGTDCKNKGP-RINQFFESKESKKLIGIYADWLED 274

[Close]

BLAST of Cp4.1LG17g05820 vs. ExPASy TrEMBL
Match: A0A5A7UUP3 (Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002180 PE=4 SV=1)

HSP 1 Score: 310 bits (795), Expect = 9.85e-103
Identity = 176/282 (62.41%), Postives = 197/282 (69.86%), Query Frame = 0


Query: 16  EARGVWPPLPPRYTVGRFPSFYRPTMSEVVPSRVMPSNFEIPQWNNVNIGLHDNELEWRY 75
           EARG WP LPP Y   R  SFYR TMS  V S  MPSNF IP WNN NIG +++EL   Y
Sbjct: 10  EARGNWPLLPPPYPDPRNQSFYRSTMSGAVSSWRMPSNFGIPPWNNWNIG-YEHELGRSY 69

Query: 76  ALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTEMKVCRQFQRRGKCAYGDQCR 135
               ND T   LPS  GI+FHE +L E   +++    S EMKVCR FQRR KCAYGDQCR
Sbjct: 70  RPGFND-THRMLPSRPGIEFHEGQLSERWNVDD----SNEMKVCRLFQRRKKCAYGDQCR 129

Query: 136 FLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPV 195
           FLH+IPE T+D G S+QN+EVR          +S FDQ EEVRSKVQTK+V R EIP P+
Sbjct: 130 FLHEIPEKTRDSGSSSQNYEVR----------RSGFDQLEEVRSKVQTKVVVRGEIPKPL 189

Query: 196 NCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSASERGRVGG--ASATTKAAAAA 255
             K R CY WQTTG C YG  CRFAHGEAELQKLE CSAS+RG VGG  A+ATT A   A
Sbjct: 190 IGKPRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCSASQRGSVGGVSATATTTAPVEA 249

Query: 256 GLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 295
           GLR S+ IGTDCKNKG  R+ Q F+SKE KKLIGIYADWLE+
Sbjct: 250 GLRSSKEIGTDCKNKGP-RINQFFESKESKKLIGIYADWLED 274

[Close]

BLAST of Cp4.1LG17g05820 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-13
Identity = 61/219 (27.85%), Postives = 96/219 (43.84%), Query Frame = 0


Query: 104 PILNNR----TGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAV 163
           P++NN       +   MK+CR+F    +C YGD+C F+H+     ++     +   V +V
Sbjct: 170 PVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISV 229

Query: 164 ASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMP-----------VNCKTRLCYLWQTT 223
                  G +  DQ  +  S +  ++  +  IP+P           V  KTRLC  +  T
Sbjct: 230 -------GATAADQPSDTASNL-IEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDIT 289

Query: 224 GHCSYGEVCRFAHGEAELQKLESCSASERGRVGGAS----------ATTKAAAAAGLRCS 283
           G C +G+ C FAHG+AEL        +  GRV G +          A   A  A  ++  
Sbjct: 290 GQCPFGDKCHFAHGQAELH-------NSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPI 349

Query: 284 RGIGTDCK--NKGSSRMKQLFKSKEHKKLIGIYADWLEN 296
             +  D    N+   R K L K  + KK+  IY DW+++
Sbjct: 350 TQVTADSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDD 373

[Close]

BLAST of Cp4.1LG17g05820 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-10
Identity = 39/150 (26.00%), Postives = 61/150 (40.67%), Query Frame = 0


Query: 97  ENRLPECPILNNRTGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKD-----FGFST 156
           E ++P        +G S + + C++F     C YG+ C FLH      ++      G   
Sbjct: 156 EFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGG 215

Query: 157 QNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHC 216
                   + G  + G         +     +   +  +I  P N KTR+C  W+ TG+C
Sbjct: 216 YGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYC 275

Query: 217 SYGEVCRFAHGEAELQKLESCSASERGRVG 242
            +G  C FAHG AEL +       E G+ G
Sbjct: 276 PFGAKCHFAHGAAELHRFGGGLVEEEGKDG 305

[Close]

BLAST of Cp4.1LG17g05820 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 52.4 bits (124), Expect = 7.3e-07
Identity = 57/244 (23.36%), Postives = 92/244 (37.70%), Query Frame = 0


Query: 80  NDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTEM-------KVCRQFQRRGKCAY-G 139
           +D++R W  +  G         E P    R+  S+E+       K+C +F R G C Y  
Sbjct: 39  DDYSRVWAINSDG--------AESPSKKTRSSSSSEIGKSFFKTKLCFKF-RAGTCPYSA 98

Query: 140 DQCRFLHKI----------PENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFEEVRSKV 199
             C F H            P   +    +++N E  AV+ G               R  V
Sbjct: 99  SSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLG--------------PRGNV 158

Query: 200 QTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSASERGRVG 259
              + +        N KTR+C  WQTTG+C +G  C FAHG +EL            ++G
Sbjct: 159 AQTLKS-------PNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIG 218

Query: 260 ----------GASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYAD 296
                     G   T  +  + G+   R      +     R ++ +K  +  K+  +Y D
Sbjct: 219 TSATLDTKQRGQVDTVTSLVSPGVSSQRTSSAVTQKPNGVRTQRKWKGPD--KISRVYGD 250

[Close]

BLAST of Cp4.1LG17g05820 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 46.6 bits (109), Expect = 4.0e-05
Identity = 26/73 (35.62%), Postives = 35/73 (47.95%), Query Frame = 0


Query: 155 EVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYG 214
           +V      +V  G    DQ EE+  +V  + +           KT LC  WQ TG C YG
Sbjct: 191 QVSTTQKVYVRGGGKKEDQEEEIEVEVYNQGMT----------KTELCNKWQETGTCPYG 250

Query: 215 EVCRFAHGEAELQ 228
           + C+FAHG  EL+
Sbjct: 251 DHCQFAHGIKELR 253

[Close]

BLAST of Cp4.1LG17g05820 vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 45.8 bits (107), Expect = 6.9e-05
Identity = 25/65 (38.46%), Postives = 33/65 (50.77%), Query Frame = 0


Query: 163 HVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHG 222
           +V  G    DQ EE+  +V  + +           KT LC  WQ TG C YG+ C+FAHG
Sbjct: 198 YVRGGGKKEDQEEEIEVEVYNQGMT----------KTELCNKWQETGTCPYGDHCQFAHG 252

Query: 223 EAELQ 228
             EL+
Sbjct: 258 IKELR 252

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g05820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT81	4.3e-12	27.85	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q84UQ3	2.0e-09	26.19	Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX...	[more]
Q9LQM3	5.8e-09	26.00	Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q7F8R0	2.1e-06	28.93	Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX...	[more]
Q69XQ3	4.6e-06	28.23	Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Cp4.1LG17g05820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513806.1	1.27e-226	100.00	zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo]	[more]
XP_022964047.1	2.62e-218	95.33	zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata]	[more]
KAG6593433.1	3.72e-218	95.00	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]
KAG7025772.1	2.15e-217	95.00	Zinc finger CCCH domain-containing protein 39 [Cucurbita argyrosperma subsp. arg...	[more]
XP_023000378.1	3.98e-211	93.02	zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG17g05820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HGS0	1.27e-218	95.33	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KMG0	1.92e-211	93.02	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A0A0KBW4	5.37e-112	65.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433210 PE=4 SV=1	[more]
A0A1S4E329	9.85e-103	62.41	zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5A7UUP3	9.85e-103	62.41	Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa O...	[more]

BLAST of Cp4.1LG17g05820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19360.1	3.1e-13	27.85	Zinc finger (CCCH-type) family protein	[more]
AT1G32360.1	4.2e-10	26.00	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	7.3e-07	23.36	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	4.0e-05	35.62	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.2	6.9e-05	38.46	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 113..140 e-value: 6.7E-6 score: 35.6 coord: 196..223 e-value: 3.3E-6 score: 36.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 198..223 e-value: 1.9E-8 score: 34.0 coord: 117..138 e-value: 1.1E-7 score: 31.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 196..224 score: 14.426917
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 113..141 score: 15.562998
None	No IPR available	GENE3D	4.10.1000.10		coord: 194..228 e-value: 2.7E-12 score: 47.8
None	No IPR available	GENE3D	4.10.1000.10		coord: 105..170 e-value: 4.0E-8 score: 35.2
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 34..293
None	No IPR available	PANTHER	PTHR12547:SF121	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	coord: 34..293
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 194..227
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 114..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g05820.1	Cp4.1LG17g05820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding