Cp4.1LG17g05550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g05550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRibosomal protein L37
LocationCp4.1LG17: 4604469 .. 4605743 (-)
RNA-Seq ExpressionCp4.1LG17g05550
SyntenyCp4.1LG17g05550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCATTCGGTCATATAAAACAGCCATTTTCTCTTCTGGAAGCTGCAGATAGAACTTTTCCACCCTAGGGTTTCTTCGTCCTGCATCAATGGTACCTCACTTTCTTCTCTGTTTCGATTTATGCTTCTGTGCAGTTGGATTCGTCGTTTTATTCTTGCTCGATTAATCTACAGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCACGCAAGCGAAAGTGTAAGCACACTCGATGTTTCGCCTTTTTCGTCACTGTTCACTTTCTATAATTCGGTTTAAATCGACTATTTTGGCGTTTGTTTATTTTGATTCAATGTAATGCTGCCTTGAGTAACCATTGATGTGTATGGTAGTTTGTTGCTAGTGTTATGTATTAAGCCTGATAAGATGGTTGAGTCTGCGAATGTGAATGAGGTTCATTTGTTCGCTGGAGTAACGTGAAGTGATCATATTGATTTTGGTTTTCCGTGGAGATTGAATTAATCTTGATTCATCTCGTTGGCGTTGGGATTATTTAGATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTATGATATTGCATTTGTAATTGATTCAATTTTTTCGCACCATTTACTGCATTTACGTACTGGGTTTCAGAATTACCTGGTTTTTCATTCCTTGAAATTGCTTTGTGTTTGTCATTAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAAGGTTTTGGAAGGAGTTCAACTTAATTTCAGTTCCCAACTATAGCTTTCAGTAGGGTGGCTTTACTCGTCTGAGAATCATTTCATATAATTTTGTTTTCTAGTTTTGCCTTTTCATGATTTAGTTGAACGCGGTTTCTTTAATATTTAATGTTTTGAAATTTGGACAAATGATTAATCAGATTATGCGTACTCTGGTACTTGTTTTTGTGCTATTTTTAGTGTGTTCTTATTCTTCCCATCCTTCCAAGATTATTTTCAGCAAGTGTTGGAGGATCTATGTCGAATCACTAAATTGTATTAGTTCATTTCGAAATTGTTTAAATCTTGCCTAGGAGTGGTTTGTTTTGGTTACCCATCCCCAGAAGCTTCCTATCTGAAATGATCAATTTTACGTAGTCAT

mRNA sequence

TGTCATTCGGTCATATAAAACAGCCATTTTCTCTTCTGGAAGCTGCAGATAGAACTTTTCCACCCTAGGGTTTCTTCGTCCTGCATCAATGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCACGCAAGCGAAAGTATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAAGGTTTTGGAAGGAGTTCAACTTAATTTCAGTTCCCAACTATAGCTTTCAGTAGGGTGGCTTTACTCGTCTGAGAATCATTTCATATAATTTTGTTTTCTAGTTTTGCCTTTTCATGATTTAGTTGAACGCGGTTTCTTTAATATTTAATGTTTTGAAATTTGGACAAATGATTAATCAGATTATGCGTACTCTGGTACTTGTTTTTGTGCTATTTTTAGTGTGTTCTTATTCTTCCCATCCTTCCAAGATTATTTTCAGCAAGTGTTGGAGGATCTATGTCGAATCACTAAATTGTATTAGTTCATTTCGAAATTGTTTAAATCTTGCCTAGGAGTGGTTTGTTTTGGTTACCCATCCCCAGAAGCTTCCTATCTGAAATGATCAATTTTACGTAGTCAT

Coding sequence (CDS)

ATGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCACGCAAGCGAAAGTATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAA

Protein sequence

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA
Homology
[Close]
BLAST of Cp4.1LG17g05550 vs. ExPASy Swiss-Prot
Match: Q43292 (60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-42
Identity = 84/95 (88.42%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PRNKG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. ExPASy Swiss-Prot
Match: Q8LEM8 (60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-42
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PR+K +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. ExPASy Swiss-Prot
Match: Q8LFH7 (60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-41
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGT+A PRNK AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]
BLAST of Cp4.1LG17g05550 vs. ExPASy Swiss-Prot
Match: Q90YT1 (60S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3)

HSP 1 Score: 131.3 bits (329), Expect = 5.6e-30
Identity = 65/95 (68.42%), Postives = 74/95 (77.89%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKRKYNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMR+M+ V RRF++GFREGT   PR    AAS+
Sbjct: 61 TGRMRHMKVVFRRFRNGFREGTVPKPRRAAVAASS 95

[Close]
BLAST of Cp4.1LG17g05550 vs. ExPASy Swiss-Prot
Match: P79244 (60S ribosomal protein L37 OS=Bos taurus OX=9913 GN=RPL37 PE=3 SV=4)

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-29
Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKRKYNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMR+++ V RRF+ GFREGT   P+    AAS+
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAASS 95

[Close]
BLAST of Cp4.1LG17g05550 vs. NCBI nr
Match: XP_022964011.1 (60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6593459.1 60S ribosomal protein L37-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190 bits (482), Expect = 9.26e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. NCBI nr
Match: XP_022953178.1 (60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022992450.1 60S ribosomal protein L37-3-like [Cucurbita maxima] >XP_023548197.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6575534.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014078.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189 bits (479), Expect = 2.66e-60
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKG+AASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGSAASA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. NCBI nr
Match: XP_023000413.1 (60S ribosomal protein L37-3-like [Cucurbita maxima])

HSP 1 Score: 188 bits (478), Expect = 3.77e-60
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKS+CSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSQCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. NCBI nr
Match: XP_022150495.1 (60S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022998691.1 60S ribosomal protein L37-3-like [Cucurbita maxima] >XP_023523625.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6606766.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188 bits (477), Expect = 5.36e-60
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYMRHVPRRFKSGFREGTEAAPR+KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. NCBI nr
Match: XP_004141772.1 (60S ribosomal protein L37-3 [Cucumis sativus] >XP_008462159.1 PREDICTED: 60S ribosomal protein L37-3-like [Cucumis melo] >XP_038896143.1 60S ribosomal protein L37-3-like [Benincasa hispida] >KAA0059300.1 60S ribosomal protein L37-3 [Cucumis melo var. makuwa] >KGN45374.1 hypothetical protein Csa_016423 [Cucumis sativus] >TYK04028.1 60S ribosomal protein L37-3 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (476), Expect = 7.62e-60
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRY+RHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. ExPASy TrEMBL
Match: A0A6J1HHN6 (Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111464162 PE=3 SV=1)

HSP 1 Score: 190 bits (482), Expect = 4.48e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. ExPASy TrEMBL
Match: A0A6J1JVQ3 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111488750 PE=3 SV=1)

HSP 1 Score: 189 bits (479), Expect = 1.29e-60
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKG+AASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGSAASA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. ExPASy TrEMBL
Match: A0A6J1GMN9 (Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111455796 PE=3 SV=1)

HSP 1 Score: 189 bits (479), Expect = 1.29e-60
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKG+AASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGSAASA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. ExPASy TrEMBL
Match: A0A6J1KMJ9 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111494673 PE=3 SV=1)

HSP 1 Score: 188 bits (478), Expect = 1.83e-60
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKS+CSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSQCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. ExPASy TrEMBL
Match: A0A6J1KAY5 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111493277 PE=3 SV=1)

HSP 1 Score: 188 bits (477), Expect = 2.60e-60
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 95
          TGRMRYMRHVPRRFKSGFREGTEAAPR+KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. TAIR 10
Match: AT1G52300.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 173.3 bits (438), Expect = 9.2e-44
Identity = 84/95 (88.42%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PRNKG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. TAIR 10
Match: AT3G16080.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-43
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGTEA PR+K +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]
BLAST of Cp4.1LG17g05550 vs. TAIR 10
Match: AT1G15250.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 170.2 bits (430), Expect = 7.8e-43
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 0 

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGT+A PRNK AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g05550 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q432921.3e-4288.4260S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2[more]
Q8LEM82.2e-4287.3760S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1[more]
Q8LFH71.1e-4186.3260S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1[more]
Q90YT15.6e-3068.4260S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3[more]
P792442.8e-2966.3260S ribosomal protein L37 OS=Bos taurus OX=9913 GN=RPL37 PE=3 SV=4[more]
BLAST of Cp4.1LG17g05550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964011.19.26e-61100.0060S ribosomal protein L37-3-like [Cucurbita moschata] >XP_023513643.1 60S riboso... [more]
XP_022953178.12.66e-6098.9560S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022992450.1 60S riboso... [more]
XP_023000413.13.77e-6098.9560S ribosomal protein L37-3-like [Cucurbita maxima][more]
XP_022150495.15.36e-6098.9560S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal ... [more]
XP_004141772.17.62e-6097.8960S ribosomal protein L37-3 [Cucumis sativus] >XP_008462159.1 PREDICTED: 60S rib... [more]
BLAST of Cp4.1LG17g05550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HHN64.48e-61100.00Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111464162 PE=3 SV=1[more]
A0A6J1JVQ31.29e-6098.95Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111488750 PE=3 SV=1[more]
A0A6J1GMN91.29e-6098.95Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111455796 PE=3 SV=1[more]
A0A6J1KMJ91.83e-6098.95Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111494673 PE=3 SV=1[more]
A0A6J1KAY52.60e-6098.95Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111493277 PE=3 SV=1[more]
BLAST of Cp4.1LG17g05550 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G52300.19.2e-4488.42Zinc-binding ribosomal protein family protein [more]
AT3G16080.11.6e-4387.37Zinc-binding ribosomal protein family protein [more]
AT1G15250.17.8e-4386.32Zinc-binding ribosomal protein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001569Ribosomal protein L37ePFAMPF01907Ribosomal_L37ecoord: 3..53
e-value: 1.0E-25
score: 89.6
IPR001569Ribosomal protein L37eHAMAPMF_00547Ribosomal_L37ecoord: 2..53
score: 16.159836
IPR011331Ribosomal protein L37ae/L37eGENE3D2.20.25.30coord: 1..87
e-value: 3.5E-46
score: 157.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..95
NoneNo IPR availablePANTHERPTHR10768:SF28RIBOSOMAL PROTEIN L37coord: 1..95
NoneNo IPR availablePANTHERPTHR1076860S RIBOSOMAL PROTEIN L37coord: 1..95
IPR018267Ribosomal protein L37e, conserved sitePROSITEPS01077RIBOSOMAL_L37Ecoord: 4..23
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g05550.1Cp4.1LG17g05550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome