Cp4.1LG17g05540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g05540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionprotein CURVATURE THYLAKOID 1C, chloroplastic
LocationCp4.1LG17: 4558139 .. 4562926 (-)
RNA-Seq ExpressionCp4.1LG17g05540
SyntenyCp4.1LG17g05540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTATATATAGAAAAAATCTGGAAATCAAAATCTTTGTGGTGCAGGTTGAAGCAGCGAAGCACCCAAGGTCCGAAATCTTATCTTCTATAGCTACAAGCGTAGGTTCGTCAATCCAAGGCCACGAGTTCCCGATAATACCAAATTTTCTACTTAATTTTTGATTTGGGAGTGTAAATTTCACTCAAACTTCATTGATTTCCCTTACTACTCACTAATCATGGCTTCCATTTTTGCTACTCTACCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACTCCTCTGTTTACTTATCAGAAGAAGCTCACTGTTTTTCCCATTGCAAGTAAGTTTATCCATTGCATAGAAATCCGAATTACTTTAATTTGTCGTCCGTGTGAAATTCCTGCGTTGAAATTGATGTCTGTTCGATCGTGTTTATTGTGCATTCATGGGGCATAATTGGTGGGTGGATGGAAGTGGTTATTTCGATGCGATGCTGAAAGCAATTTTCAGTAGGAGTTTCGGTCTTAAGGTATAATGTAGTTTGAATTAGGGCTAGAAAATGGCGCTTGTTACTCTTTCAGTCTTTACATTTTCATATCTGGTAGCACAATTCTTAGACATGGCCTTGAGATTATGGAAGATGGAGAAAGTATCACATTATAGGTTTGAAACTTTAGAATCTTCAAATTTTGAGAGGCTGCATAACTGGTTGTTGATATTGAAGCTTTGAACATCAGTATGAATGTCTATAATGGAGACAATTCTCTTCAACCTCCAGAAGCTTCACATTCCCTGCGTAGTTTCTTCATAGAAGCAAGCCTTCATTTGGAATGAAAAAAGGGGTTGAGGGGATCCGTATATGTTGTTCAGGTCGATCAGAAGGCGCGGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATCGATTATGCTCCCGCAGAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTGTGGATTTCATATAAAAAACAAAAAAAGGAACGTGTTATATCCGAAACGTACGAAATATAGTAAATCTCGTAAAGGCAGATGTAGTAGGGGTTGAACTGCCTTCTAGACTTGAATTTGATTTTCAGGATGATAGGAATCGGCATGGGTATTATTCATTAAACTAAAGGGGATAGCCAATGCATATCATGTAAAGTAGTCTAGACAAATTGAGAATGCCTCAAGCTTCTTTCCATAACATTCACAATGTTACTGTCACAATTCACTTTCATGGGTTGTGTTTTTCGTAATTTTTGAAGGTCTATTTAGAACAGACTGTTGTATATCAATAGGAGTAGGAGTTTCTTCTCGTTGCCTCAAGTGGTTGGCACCCCTTAGGTAGCTGTATCTCTGTCGATCGTATAGACTACTATGGATCGGCCTAGTGGTCAATATAAACTAATGTAAATAATATAGGGGTTGGATGGAAAGAGTTCATGCTATGGTGACTACCCATCTAGGAGAATTTAATATTCTACTTGTTTTCTTGGCAACAATATGTCCTGTAAGTGCTGAGGATGGTTGGGAGAGAGTCCCACATTGGCCAATTTAGGGAATAATTATGGGTTTATAAGTAAGGAATACATCTCCATTGGAATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTTCATGATTCCTAACATGGTATCAAAGCCATGCTCTTAACTTAGCCATGTCAATAAAATTTTCAAATGTCGAATAAAGAAGTTGCGAGCCTCGAAAGTGTAGTTAAAAGTGACTCAAGTGTCGAACAAATGGTGTACTTTGTTCGAGGACTCCAGAGAAGGAGTTGAGCCTTTAAGAGGAGGTTGTTCGAGGGCTCCATGGGCCTTGGGAGAGGCTCTATATTGTACTTTGTTCGAGAGGAGGATTGTTGAGGATTGTTGGGAGGGAGTCTCACATTGGCTAATTTAGGAAATGATCCTATGTAAGGAATACATCTCCATTGGGATGAGGCCTTGTGGGAAAGCCCAAAATAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATATCTTTGTGGAGAGTCGCGATTCCTAACAGTAATAATAGTTAAGGTTTGTGCAAGTTAGTTCTGACAAACTGTGGTTGGAAATTTGCATCTTAAATGTTACATTTTCTTTGGATGAAAATTTCAAGGTTATGGATAAAAACTACAAAATAACATTCCCTGTTTCCTAGCCATCTACCGTAGATAACATTCTCTGTTTATTGTGACAACTAATTGAAGTTCACCATATCTCGCTTAGCATACTTCTTGTTGGTAAATAATTTCTCAAAATTGCAGAGGGACGTTCTGCCAATGGTATTGTAAAGGCTATTGGAGACAGCTCTGAATCTTCTACTTCCATTGATATTATTAAGTCTGTTCGAAATGTTGTAAGCTCTTTATTTCTTTGTACTTTATGTAAGCCTTTTTTATACATTGGAACATCTTGATTGGGAGGAAAAATTGATGAAGACTTCTTTGCGTCTACAGTTTTCAATTTTCCTTGCAAGTGGGTGATAAAAAGTTTCTTTTGTTTGCAATTTACAGTTTTCAATTCTCCACATTTATTGGTTGTTCTTTTCTGTTACTATTAGCAAATTTTTCATCCTATGGATGGCAAGTTTTACCTTAATCTTTAAAGTATTTGTATGTTTCTGGTTAACTTGGGACAGTGGGATCAACCTGAAGATCGATTGGGACTTTTTGGCCTGGGATTTGCAGCTGTAGTAGGTGCATGGACAGCAACAAATCTTGTTACGGTAATTAAAAAACAATCACCCCTTTTGATAAATGAGTGACGAAATGTGATATCCCACATCAATGGGAGGAGAACGAAACACCCTTTATAAGGGTGTAAAAACCTTTCCTTAGCAGACGTGTTTTAAAGCCTTGAGAAGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTAGGCCTGAGCCGTCACAAATGGTATCAGAGCCAGACCTCCGGGCGATGTGCCAACGAGGAGGTTGTCCCCCAAAGGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGATGCTGGGCCCCGAAGGGGGTGGATTGTGATATCCCACATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAGGGCGTGGAAACCTTTATCTAGCAGATGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGAAAAGCCCAAAGAGGACAATATCTTTTAGCTGTAGGCTTGAGCCGTTACACGAGATGATTCCTCATGGAGTTTTCGACGGTTTTAGTGGTTCCTCGTGCTTTATTACTTTCATCTTCAACACATAACTGTTTCGTTCTCGCTTTTAGGCTGTTGACAAGCTACCACTGCTTCCTGGTGTATTAGAATTCATAGGAATACTGGTTTCTTGGGTAAGTAACAAGAAGCATGAAGAATTTCTCTACTGTCTTTCCCAAATTTGAACTCTGAAGCCATGGTTTTCTCCTATAGCAAATTCCATTACTCACCAATGTTTCCCCTTTTCCAGTGGTTCGTGTATCGCTACCTCTTGTTCAAACCAAACCGGTAAGGCAAAATTCATTCAATTTTTCTTTTCGTTCACGTGTGAAGTCTTCTCAATCCTGTATTTTCGACATTTTTATCATCTTTAGCACTTTGCCGCAAAATTTATGCAACCAGCTTGTGAATATGACATTTCATTGTAGCAAACAACCATGAACTAGCTTCTTTATCTTTCACTGCAGGGAAGAGCTTTTGCAGATAATCAACAAATCAGTAGCAGATGTATTGGGACAGTAAATTGCTCCTGTTCTTAAAGGTCCGATTTGGTACAATCTTCATTATCTTCGTTATATTTTACAAAGTGGTGAGTAAAGAGGGTTGGCCGCTGGGTTGGTTTCTGAATTGTTTTCAACTGTCAAAAGTGTGAATTTTAACTGATGTTGGTGTTTGATTCATCAATGCATTCCAATCCCAAATCTTCAGTTCTGTAGTTTATACCTATATCAGTTTATGCTTCAAAAATTTCTGTCATTGTTTCTTATAAAACCTATGCTTTTATTTGATATTATTTCTTGGTTTCTTGAGTATACACTAGGAATTTCAGTAGCTAGAGTTTGAAGTTCATGGCTCATATCATGTAATGCATAGTTAATATTGTAATTGGCACATAATGCATAGTTTAGTTTACTGACGTTGGATTTTGATTTTGAGAGCGAGGTTATGCAACTACATTGTGCTATGTAGATTTTAGATTTGAAGAAGATCAGTAGAAAGAATCATAGAACAATGCCTATTCACTTGCAGCCGTGACTCCGCTGTCGAGCGATCGGTAGCAACAGATAAATCATGCCTCTCACATATCGGCTAGATCTCTCCATCCTCGGCGTGGCCTGAGGTTTAGTTTCTCCATCTCTAGCTCTCCCCGTTTCCGATTTCAAAATCGATCTCTGTTTTTATCATAACTTTGTGCCTCAAAATTCCAAAACCCAAGAGAGGCTGAAAAGTAACCGATTGGTTCGGATTAAAACCGATTTTTCGTTTGCTCAACACTGGTCGGTCTTCATCTATAAACCAAAGTTACTGGTTTGGTGTTGCTGGGCAAAAACCGAAATGAACCGATGGTCTCTAATGTGGTTTAGGTTCATTTTCTATTATGAAATTTGTCGATTGAAAATCGTTAAATTCAAACTTAACTTCAAGAATTCAATGGAAGACTGGATTAAAACTCACGAACC

mRNA sequence

TATTATATATAGAAAAAATCTGGAAATCAAAATCTTTGTGGTGCAGGTTGAAGCAGCGAAGCACCCAAGGTCCGAAATCTTATCTTCTATAGCTACAAGCGTAGGTTCGTCAATCCAAGGCCACGAGTTCCCGATAATACCAAATTTTCTACTTAATTTTTGATTTGGGAGTGTAAATTTCACTCAAACTTCATTGATTTCCCTTACTACTCACTAATCATGGCTTCCATTTTTGCTACTCTACCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACTCCTCTGTTTACTTATCAGAAGAAGCTCACTGTTTTTCCCATTGCAAAGGGACGTTCTGCCAATGGTATTGTAAAGGCTATTGGAGACAGCTCTGAATCTTCTACTTCCATTGATATTATTAAGTCTGTTCGAAATGTTTGGGATCAACCTGAAGATCGATTGGGACTTTTTGGCCTGGGATTTGCAGCTGTAGCTGTTGACAAGCTACCACTGCTTCCTGGTGTATTAGAATTCATAGGAATACTGGTTTCTTGGTGGTTCGTGTATCGCTACCTCTTGTTCAAACCAAACCGGGAAGAGCTTTTGCAGATAATCAACAAATCAGTAGCAGATGTATTGGGACAGTAAATTGCTCCTGTTCTTAAAGGTCCGATTTGGTACAATCTTCATTATCTTCGTTATATTTTACAAAGTGGTGAGTAAAGAGGGTTGGCCGCTGGGTTGGTTTCTGAATTGTTTTCAACTGTCAAAAGTGTGAATTTTAACTGATGTTGGTGTTTGATTCATCAATGCATTCCAATCCCAAATCTTCAGTTCTGTAGTTTATACCTATATCAGTTTATGCTTCAAAAATTTCTGTCATTGTTTCTTATAAAACCTATGCTTTTATTTGATATTATTTCTTGGTTTCTTGAGTATACACTAGGAATTTCAGTAGCTAGAGTTTGAAGTTCATGGCTCATATCATGTAATGCATAGTTAATATTGTAATTGGCACATAATGCATAGTTTAGTTTACTGACGTTGGATTTTGATTTTGAGAGCGAGGTTATGCAACTACATTGTGCTATGTAGATTTTAGATTTGAAGAAGATCAGTAGAAAGAATCATAGAACAATGCCTATTCACTTGCAGCCGTGACTCCGCTGTCGAGCGATCGGTAGCAACAGATAAATCATGCCTCTCACATATCGGCTAGATCTCTCCATCCTCGGCGTGGCCTGAGGTTTAGTTTCTCCATCTCTAGCTCTCCCCGTTTCCGATTTCAAAATCGATCTCTGTTTTTATCATAACTTTGTGCCTCAAAATTCCAAAACCCAAGAGAGGCTGAAAAGTAACCGATTGGTTCGGATTAAAACCGATTTTTCGTTTGCTCAACACTGGTCGGTCTTCATCTATAAACCAAAGTTACTGGTTTGGTGTTGCTGGGCAAAAACCGAAATGAACCGATGGTCTCTAATGTGGTTTAGGTTCATTTTCTATTATGAAATTTGTCGATTGAAAATCGTTAAATTCAAACTTAACTTCAAGAATTCAATGGAAGACTGGATTAAAACTCACGAACC

Coding sequence (CDS)

ATGGCTTCCATTTTTGCTACTCTACCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACTCCTCTGTTTACTTATCAGAAGAAGCTCACTGTTTTTCCCATTGCAAAGGGACGTTCTGCCAATGGTATTGTAAAGGCTATTGGAGACAGCTCTGAATCTTCTACTTCCATTGATATTATTAAGTCTGTTCGAAATGTTTGGGATCAACCTGAAGATCGATTGGGACTTTTTGGCCTGGGATTTGCAGCTGTAGCTGTTGACAAGCTACCACTGCTTCCTGGTGTATTAGAATTCATAGGAATACTGGTTTCTTGGTGGTTCGTGTATCGCTACCTCTTGTTCAAACCAAACCGGGAAGAGCTTTTGCAGATAATCAACAAATCAGTAGCAGATGTATTGGGACAGTAA

Protein sequence

MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNVWDQPEDRLGLFGLGFAAVAVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
Homology
BLAST of Cp4.1LG17g05540 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-29
Identity = 74/156 (47.44%), Postives = 101/156 (64.74%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGK--SFTPLFTYQKKLT-----VFPIAKGRSANGI---VKAIGDS 60
           MASI ATLP PLL   +  + T +      LT     + P++  R+ + I   VKA G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SESSTSIDIIKSVRNVWDQPEDRLGLFGLGFAAV-----------AVDKLPLLPGVLEFI 120
           S+SST +D++ +++NVWD+ EDRLGL GLGFA +           A+DKLP++    E +
Sbjct: 61  SDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

Query: 121 GILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ 136
           GIL S WF YRYLLFKP+R+EL +I+ KSVAD+LGQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156

BLAST of Cp4.1LG17g05540 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 38/121 (31.40%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 25  YQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNVWDQPEDRLGLFGLGFAAV 84
           Y +K+    + +  +  G   A    +E++   +I+K+ +  W++ +D+  +  L FA V
Sbjct: 52  YCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGV 111

Query: 85  -----------AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVL 135
                      A+D+LPL+PGVLE +GI  + WF Y+ L+FKP+RE L + +  +  D+L
Sbjct: 112 VALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDIL 171

BLAST of Cp4.1LG17g05540 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-08
Identity = 46/142 (32.39%), Postives = 67/142 (47.18%), Query Frame = 0

Query: 11  PLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKA----IGDSSESSTSID---IIKSV 70
           P L P       FT   KL         S NG+ K        SSE ++SID   +I  +
Sbjct: 29  PYLPPRSFGRSSFTVPLKLV--------SGNGLQKVELLKTRASSEETSSIDTNELITDL 88

Query: 71  RNVWDQPEDRLGLFGLGFAAV-----------AVDKLPLLPGVLEFIGILVSWWFVYRYL 130
           +  WD  E++  +   G  A+           A++ +PLLP V+E +G+  + WFVYRYL
Sbjct: 89  KEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYL 148

Query: 131 LFKPNREELLQIINKSVADVLG 135
           LFK +R+EL + I      + G
Sbjct: 149 LFKSSRKELAEDIESLKKKIAG 162

BLAST of Cp4.1LG17g05540 vs. ExPASy Swiss-Prot
Match: Q119Z5 (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-06
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 0

Query: 63  VRNVWDQPEDRLGLFG--------LGFAAV---AVDKLPLLPGVLEFIGILVSWWFVYRY 122
           +  ++ Q + +L LFG          F AV   A+D +P+L  + E IG++   WFVYRY
Sbjct: 796 INQLYQQYQGQLKLFGWLALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRY 855

Query: 123 LLFKPNREELLQIINKSVADVLGQ 136
           LL + NR+ELL  I     ++ G+
Sbjct: 856 LLKRSNRQELLDKIENIKREIFGK 879

BLAST of Cp4.1LG17g05540 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 21/50 (42.00%), Postives = 33/50 (66.00%), Query Frame = 0

Query: 85  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG 135
           +++ +PL P ++E +G+  + WF  RYLLFK NREEL   +++    VLG
Sbjct: 140 SLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLG 189

BLAST of Cp4.1LG17g05540 vs. NCBI nr
Match: XP_022964632.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita moschata] >XP_022964633.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita moschata] >XP_023515295.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023515296.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260 bits (665), Expect = 3.11e-87
Identity = 135/146 (92.47%), Postives = 135/146 (92.47%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60
           MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAV-----------AVDKLPLLPGVLEFIGILVSWWFVY 120
           KSVRNVWDQPEDRLGLFGLGFAAV           AVDKLPLLPGVLEFIGILVSWWFVY
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFVY 120

Query: 121 RYLLFKPNREELLQIINKSVADVLGQ 135
           RYLLFKPNREELLQIINKSVADVLGQ
Sbjct: 121 RYLLFKPNREELLQIINKSVADVLGQ 146

BLAST of Cp4.1LG17g05540 vs. NCBI nr
Match: XP_023000405.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima] >XP_023000406.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima])

HSP 1 Score: 251 bits (641), Expect = 1.37e-83
Identity = 132/146 (90.41%), Postives = 133/146 (91.10%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60
           MASIFATLPPPLLAPGKSF PLFTYQK +TVFPIAKGRSANGIVKAIGDSSESSTSIDII
Sbjct: 1   MASIFATLPPPLLAPGKSFNPLFTYQK-ITVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAV-----------AVDKLPLLPGVLEFIGILVSWWFVY 120
           KSVRNVWDQPEDRLGLFGLGFAAV           AVDKLPLLPGVLEFIGILVSWWFVY
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFVY 120

Query: 121 RYLLFKPNREELLQIINKSVADVLGQ 135
           RYLLFKPNREELLQIINKSVADVLGQ
Sbjct: 121 RYLLFKPNREELLQIINKSVADVLGQ 145

BLAST of Cp4.1LG17g05540 vs. NCBI nr
Match: KAG6593469.1 (Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259 bits (662), Expect = 5.44e-80
Identity = 134/146 (91.78%), Postives = 135/146 (92.47%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60
           MASIFATLPPPLLAPGKSFTPLFTYQ+KLTVFPIAKGRSANGIVKAIGDSSESSTSIDII
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAV-----------AVDKLPLLPGVLEFIGILVSWWFVY 120
           KSVRNVWDQPEDRLGLFGLGFAAV           AVDKLPLLPGVLEFIGILVSWWFVY
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFVY 120

Query: 121 RYLLFKPNREELLQIINKSVADVLGQ 135
           RYLLFKPNREELLQIINKSVADVLGQ
Sbjct: 121 RYLLFKPNREELLQIINKSVADVLGQ 146

BLAST of Cp4.1LG17g05540 vs. NCBI nr
Match: KAG7025810.1 (Protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218 bits (555), Expect = 7.05e-71
Identity = 116/135 (85.93%), Postives = 117/135 (86.67%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60
           MASIFATLPPPLLAPGKSFTPLFTYQ+KLTVFPIAKGRSANGIVKAIGDSSESSTSIDII
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAVAVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREE 120
           KSVRNV                  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREE
Sbjct: 61  KSVRNV------------------AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREE 117

Query: 121 LLQIINKSVADVLGQ 135
           LLQIINKSVADVLGQ
Sbjct: 121 LLQIINKSVADVLGQ 117

BLAST of Cp4.1LG17g05540 vs. NCBI nr
Match: XP_038897597.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida])

HSP 1 Score: 213 bits (542), Expect = 1.69e-68
Identity = 114/146 (78.08%), Postives = 119/146 (81.51%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60
           MASI ATLPPPLLAP KSFT L T QK LT FPIA  RS N +VKA+G SSESSTS+DII
Sbjct: 1   MASIVATLPPPLLAPRKSFTLLNTSQK-LTAFPIANRRSGNVVVKAVGGSSESSTSLDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAVA-----------VDKLPLLPGVLEFIGILVSWWFVY 120
           KSVRNVWDQPEDRL LFGLGFAAVA           +DKLPLLPGVLEFIG LVSWWFVY
Sbjct: 61  KSVRNVWDQPEDRLALFGLGFAAVATVWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVY 120

Query: 121 RYLLFKPNREELLQIINKSVADVLGQ 135
           RYLLFKPNREELLQIINKS+ DV GQ
Sbjct: 121 RYLLFKPNREELLQIINKSIIDVFGQ 145

BLAST of Cp4.1LG17g05540 vs. ExPASy TrEMBL
Match: A0A6J1HLG0 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464586 PE=4 SV=1)

HSP 1 Score: 260 bits (665), Expect = 1.51e-87
Identity = 135/146 (92.47%), Postives = 135/146 (92.47%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60
           MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAV-----------AVDKLPLLPGVLEFIGILVSWWFVY 120
           KSVRNVWDQPEDRLGLFGLGFAAV           AVDKLPLLPGVLEFIGILVSWWFVY
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFVY 120

Query: 121 RYLLFKPNREELLQIINKSVADVLGQ 135
           RYLLFKPNREELLQIINKSVADVLGQ
Sbjct: 121 RYLLFKPNREELLQIINKSVADVLGQ 146

BLAST of Cp4.1LG17g05540 vs. ExPASy TrEMBL
Match: A0A6J1KFS9 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494666 PE=4 SV=1)

HSP 1 Score: 251 bits (641), Expect = 6.65e-84
Identity = 132/146 (90.41%), Postives = 133/146 (91.10%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60
           MASIFATLPPPLLAPGKSF PLFTYQK +TVFPIAKGRSANGIVKAIGDSSESSTSIDII
Sbjct: 1   MASIFATLPPPLLAPGKSFNPLFTYQK-ITVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAV-----------AVDKLPLLPGVLEFIGILVSWWFVY 120
           KSVRNVWDQPEDRLGLFGLGFAAV           AVDKLPLLPGVLEFIGILVSWWFVY
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSWWFVY 120

Query: 121 RYLLFKPNREELLQIINKSVADVLGQ 135
           RYLLFKPNREELLQIINKSVADVLGQ
Sbjct: 121 RYLLFKPNREELLQIINKSVADVLGQ 145

BLAST of Cp4.1LG17g05540 vs. ExPASy TrEMBL
Match: A0A6J1CUT1 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014410 PE=4 SV=1)

HSP 1 Score: 211 bits (537), Expect = 4.58e-68
Identity = 114/146 (78.08%), Postives = 123/146 (84.25%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60
           MASI A+LPPPLLAPGKSFT L T QK LTVFPIAK RSA  +VKA GDSS+SS S+ II
Sbjct: 1   MASIVASLPPPLLAPGKSFTLLNTSQK-LTVFPIAKKRSATVVVKATGDSSDSS-SLSII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAVA-----------VDKLPLLPGVLEFIGILVSWWFVY 120
           KSV+N+WDQPEDRLGLFGLGFAAVA           +DKLPLLPG+LEFIG LVSWWFVY
Sbjct: 61  KSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSWWFVY 120

Query: 121 RYLLFKPNREELLQIINKSVADVLGQ 135
           RYLLFKPNREELLQIINKS+ADVLGQ
Sbjct: 121 RYLLFKPNREELLQIINKSIADVLGQ 144

BLAST of Cp4.1LG17g05540 vs. ExPASy TrEMBL
Match: A0A0A0KC66 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447010 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 1.93e-67
Identity = 109/146 (74.66%), Postives = 118/146 (80.82%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60
           MASI ATLPPPLLAP KSFT +    +KL+VF  A GRS N +VKA+G SSESSTS+DI+
Sbjct: 1   MASIVATLPPPLLAPRKSFT-ILNISQKLSVFSTANGRSGNVVVKAVGGSSESSTSLDIV 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAVA-----------VDKLPLLPGVLEFIGILVSWWFVY 120
           KSVRNVWDQPEDRL LFGLGFAAVA           +DKLPLLPGVLEFIG LVSWWFVY
Sbjct: 61  KSVRNVWDQPEDRLALFGLGFAAVATAWTATNVVTAIDKLPLLPGVLEFIGALVSWWFVY 120

Query: 121 RYLLFKPNREELLQIINKSVADVLGQ 135
           RYLLFKPNREELLQIINKS+ DV GQ
Sbjct: 121 RYLLFKPNREELLQIINKSILDVFGQ 145

BLAST of Cp4.1LG17g05540 vs. ExPASy TrEMBL
Match: A0A5D3BWY3 (Protein CURVATURE THYLAKOID 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002150 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 4.53e-66
Identity = 108/146 (73.97%), Postives = 116/146 (79.45%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60
           MASI ATLPPPLLAP KSFT +    +KL+V   AKGR  N +VKA+G SSESSTS+DII
Sbjct: 1   MASIVATLPPPLLAPRKSFT-ILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDII 60

Query: 61  KSVRNVWDQPEDRLGLFGLGFAAVA-----------VDKLPLLPGVLEFIGILVSWWFVY 120
           KSVRNVWDQPEDR  LFGLGFAAVA           +DKLPLLPGVLEFIG LVSWWFVY
Sbjct: 61  KSVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSWWFVY 120

Query: 121 RYLLFKPNREELLQIINKSVADVLGQ 135
           RYLLFKPNREELLQIINKS+ DV GQ
Sbjct: 121 RYLLFKPNREELLQIINKSILDVFGQ 145

BLAST of Cp4.1LG17g05540 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 130.6 bits (327), Expect = 9.7e-31
Identity = 74/156 (47.44%), Postives = 101/156 (64.74%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGK--SFTPLFTYQKKLT-----VFPIAKGRSANGI---VKAIGDS 60
           MASI ATLP PLL   +  + T +      LT     + P++  R+ + I   VKA G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SESSTSIDIIKSVRNVWDQPEDRLGLFGLGFAAV-----------AVDKLPLLPGVLEFI 120
           S+SST +D++ +++NVWD+ EDRLGL GLGFA +           A+DKLP++    E +
Sbjct: 61  SDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

Query: 121 GILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ 136
           GIL S WF YRYLLFKP+R+EL +I+ KSVAD+LGQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 156

BLAST of Cp4.1LG17g05540 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 124.4 bits (311), Expect = 6.9e-29
Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGK--SFTPLFTYQKKLT-----VFPIAKGRSANGI---VKAIGDS 60
           MASI ATLP PLL   +  + T +      LT     + P++  R+ + I   VKA G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SESSTSIDIIKSVRNVWDQPEDRLGLFGLGFAAV-----------AVDKLPLLPGVLEFI 120
           S+SST +D++ +++N WD+ EDRLGL GLGFA +           A+DKLP++    E +
Sbjct: 61  SDSSTDLDVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

Query: 121 GILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ 136
           GIL S WF YRYLLFKP+R+EL +I+ KSVAD+LGQ
Sbjct: 121 GILFSTWFTYRYLLFKPDRQELSKIVKKSVADILGQ 155

BLAST of Cp4.1LG17g05540 vs. TAIR 10
Match: AT1G52220.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 251 Blast hits to 251 proteins in 43 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 7.0e-21
Identity = 61/145 (42.07%), Postives = 86/145 (59.31%), Query Frame = 0

Query: 1   MASIFATLPPPLLAPGK--SFTPLFTYQKKLT-----VFPIAKGRSANGI---VKAIGDS 60
           MASI ATLP PLL   +  + T +      LT     + P++  R+ + I   VKA G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SESSTSIDIIKSVRNVWDQPEDRLGLFGLGFAAVAVDKLPLLPGVLEFIGILVSWWFVYR 120
           S+SST +D++ +++N                  VA+DKLP++    E +GIL S WF YR
Sbjct: 61  SDSSTDLDVVSTIQN------------------VAIDKLPVISSGFELVGILFSTWFTYR 120

Query: 121 YLLFKPNREELLQIINKSVADVLGQ 136
           YLLFKP+R+EL +I+ KSVAD+LGQ
Sbjct: 121 YLLFKPDRQELSKIVKKSVADILGQ 127

BLAST of Cp4.1LG17g05540 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 77.4 bits (189), Expect = 9.7e-15
Identity = 38/121 (31.40%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 25  YQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNVWDQPEDRLGLFGLGFAAV 84
           Y +K+    + +  +  G   A    +E++   +I+K+ +  W++ +D+  +  L FA V
Sbjct: 52  YCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGV 111

Query: 85  -----------AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVL 135
                      A+D+LPL+PGVLE +GI  + WF Y+ L+FKP+RE L + +  +  D+L
Sbjct: 112 VALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDIL 171

BLAST of Cp4.1LG17g05540 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 77.4 bits (189), Expect = 9.7e-15
Identity = 38/121 (31.40%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 25  YQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNVWDQPEDRLGLFGLGFAAV 84
           Y +K+    + +  +  G   A    +E++   +I+K+ +  W++ +D+  +  L FA V
Sbjct: 52  YCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGV 111

Query: 85  -----------AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVL 135
                      A+D+LPL+PGVLE +GI  + WF Y+ L+FKP+RE L + +  +  D+L
Sbjct: 112 VALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDIL 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9M8121.4e-2947.44Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Q8LCA11.4e-1331.40Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
O046161.0e-0832.39Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Q119Z53.6e-0635.71Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=... [more]
Q8LDD31.5e-0442.00Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
XP_022964632.13.11e-8792.47protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita moschata] >XP_022964633... [more]
XP_023000405.11.37e-8390.41protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima] >XP_023000406.1... [more]
KAG6593469.15.44e-8091.78Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7025810.17.05e-7185.93Protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita argyrosperma subsp. arg... [more]
XP_038897597.11.69e-6878.08protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1HLG01.51e-8792.47protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1KFS96.65e-8490.41protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1CUT14.58e-6878.08protein CURVATURE THYLAKOID 1C, chloroplastic OS=Momordica charantia OX=3673 GN=... [more]
A0A0A0KC661.93e-6774.66CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447010 PE=4 S... [more]
A0A5D3BWY34.53e-6673.97Protein CURVATURE THYLAKOID 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
AT1G52220.19.7e-3147.44FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G52220.26.9e-2946.79FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G52220.37.0e-2142.07FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G46820.19.7e-1531.40photosystem I P subunit [more]
AT2G46820.29.7e-1531.40photosystem I P subunit [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025564Cyanobacterial aminoacyl-tRNA synthetase, CAAD domainPFAMPF14159CAADcoord: 63..134
e-value: 7.9E-19
score: 67.3
IPR033344Protein CURVATURE THYLAKOID 1PANTHERPTHR33222FAMILY NOT NAMEDcoord: 1..135
NoneNo IPR availablePANTHERPTHR33222:SF3PROTEIN CURVATURE THYLAKOID 1C, CHLOROPLASTICcoord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g05540.1Cp4.1LG17g05540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid