Cp4.1LG17g01020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g01020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Low-density receptor-like protein
Location	Cp4.1LG17: 647591 .. 648447 (+)
RNA-Seq Expression	Cp4.1LG17g01020
Synteny	Cp4.1LG17g01020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATACCCTTTGTGAGAACCCGCTGAACAACTCTTCTTTTTGCCTGATCGAACCATTTCAACTGCATAGCGGGAATCTCTATGCTCTGATAGATCACAGTTTTTCTCGCTCTCTCTCTCTCTATCTTTCTCTCTGTTTCTCTCTGCAAGACAAAGCCACCGGAAGCAATGGCGTCGTCGGCAGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCGGAACAAACAGACCGTCAAAGAAGGTGTGTTTAATTTGATGTTAAATTTGTATGTTTATGCTCGCCGGTGATTTGAAATGGAGTTTCAATTCTTTGTGTTGGACCTGCATTTCAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAGCTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGAAAATCTCAGTTATTTGAATTGTGATTAGTCCTGAGAATTGAATGGTTTCATATGCATTAGTAAAGATAAATCAACGGATCTGGTTTTGTTTTGTTTTTGTTTTGTCGTAATAAAGTGATATAATGACTGAAGTAGCAACTATTGAATTAGTTTAGTTAAGAAACCGCAATGCTTCAGCGTTCAGCCTTCAGTGTTGCCACTATGCATTGTTAGTCACTCGGATATTGTGTATAGTGATATTTGTACCTGAGACTTGGTGAACCAATACTTCGTAAAGACTTATTCTTACACAGACAAAAAAGAGGAAGAAG

mRNA sequence

ATATACCCTTTGTGAGAACCCGCTGAACAACTCTTCTTTTTGCCTGATCGAACCATTTCAACTGCATAGCGGGAATCTCTATGCTCTGATAGATCACAGTTTTTCTCGCTCTCTCTCTCTCTATCTTTCTCTCTGTTTCTCTCTGCAAGACAAAGCCACCGGAAGCAATGGCGTCGTCGGCAGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCGGAACAAACAGACCGTCAAAGAAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAGCTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGAAAATCTCAGTTATTTGAATTGTGATTAGTCCTGAGAATTGAATGGTTTCATATGCATTAGTAAAGATAAATCAACGGATCTGGTTTTGTTTTGTTTTTGTTTTGTCGTAATAAAGTGATATAATGACTGAAGTAGCAACTATTGAATTAGTTTAGTTAAGAAACCGCAATGCTTCAGCGTTCAGCCTTCAGTGTTGCCACTATGCATTGTTAGTCACTCGGATATTGTGTATAGTGATATTTGTACCTGAGACTTGGTGAACCAATACTTCGTAAAGACTTATTCTTACACAGACAAAAAAGAGGAAGAAG

Coding sequence (CDS)

ATGGCGTCGTCGGCAGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCGGAACAAACAGACCGTCAAAGAAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAGCTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGA

Protein sequence

MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQKSVGWYHDESDSGVHDGADGKKAGSVAARRLLHQVS

Homology

[Close]

BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match: XP_023000085.1 (uncharacterized protein LOC111494388 isoform X1 [Cucurbita maxima])

HSP 1 Score: 184 bits (466), Expect = 4.80e-58
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQVS 95
          SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ++
Sbjct: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQIN 95

[Close]

BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match: XP_023000089.1 (uncharacterized protein LOC111494388 isoform X5 [Cucurbita maxima])

HSP 1 Score: 183 bits (464), Expect = 5.16e-58
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQVS 95
          SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ++
Sbjct: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQMA 95

[Close]

BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match: XP_023000087.1 (uncharacterized protein LOC111494388 isoform X3 [Cucurbita maxima])

HSP 1 Score: 183 bits (465), Expect = 5.29e-58
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQV 94
          SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQI 94

[Close]

BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match: XP_023514362.1 (uncharacterized protein LOC111778653 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183 bits (465), Expect = 5.46e-58
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQV 94
          SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQI 94

[Close]

BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match: KAG6593936.1 (hypothetical protein SDJN03_13412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (462), Expect = 1.04e-57
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIR+NKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQVS 95
          SVGWYHDESDSGVHDG DGKKAGSVAARRLLHQVS
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQVS 95

[Close]

BLAST of Cp4.1LG17g01020 vs. ExPASy TrEMBL
Match: A0A6J1KHD0 (uncharacterized protein LOC111494388 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494388 PE=4 SV=1)

HSP 1 Score: 184 bits (466), Expect = 2.33e-58
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQVS 95
          SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ++
Sbjct: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQIN 95

[Close]

BLAST of Cp4.1LG17g01020 vs. ExPASy TrEMBL
Match: A0A6J1KIX7 (uncharacterized protein LOC111494388 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111494388 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 2.50e-58
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQVS 95
          SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ++
Sbjct: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQMA 95

[Close]

BLAST of Cp4.1LG17g01020 vs. ExPASy TrEMBL
Match: A0A6J1KCK7 (uncharacterized protein LOC111494388 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111494388 PE=4 SV=1)

HSP 1 Score: 183 bits (465), Expect = 2.56e-58
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQV 94
          SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQI 94

[Close]

BLAST of Cp4.1LG17g01020 vs. ExPASy TrEMBL
Match: A0A6J1KEW6 (uncharacterized protein LOC111494388 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494388 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 6.46e-58
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQV 94
          SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQM 94

[Close]

BLAST of Cp4.1LG17g01020 vs. ExPASy TrEMBL
Match: A0A6J1KLL4 (uncharacterized protein LOC111494388 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111494388 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 7.63e-58
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ 93
          SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ 93

[Close]

BLAST of Cp4.1LG17g01020 vs. TAIR 10
Match: AT5G18850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 120.2 bits (300), Expect = 9.2e-28
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 2  ASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQKS 61
          +S   RI FR V+++ L++V+FYVGRPLYWKISAT+HDIR NKQ+V+EG SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGADGKKAGSVAARRLL 92
          VGWYHDESDSG  +G   KK+G   +RRLL
Sbjct: 66 VGWYHDESDSGFREG-HNKKSGIAVSRRLL 94

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g01020 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g01020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000085.1	4.80e-58	97.89	uncharacterized protein LOC111494388 isoform X1 [Cucurbita maxima]	[more]
XP_023000089.1	5.16e-58	97.89	uncharacterized protein LOC111494388 isoform X5 [Cucurbita maxima]	[more]
XP_023000087.1	5.29e-58	98.94	uncharacterized protein LOC111494388 isoform X3 [Cucurbita maxima]	[more]
XP_023514362.1	5.46e-58	98.94	uncharacterized protein LOC111778653 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
KAG6593936.1	1.04e-57	97.89	hypothetical protein SDJN03_13412, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG17g01020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KHD0	2.33e-58	97.89	uncharacterized protein LOC111494388 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KIX7	2.50e-58	97.89	uncharacterized protein LOC111494388 isoform X5 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KCK7	2.56e-58	98.94	uncharacterized protein LOC111494388 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KEW6	6.46e-58	98.94	uncharacterized protein LOC111494388 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KLL4	7.63e-58	100.00	uncharacterized protein LOC111494388 isoform X4 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Cp4.1LG17g01020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18850.1	9.2e-28	65.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g01020.1	Cp4.1LG17g01020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane