Cp4.1LG17g00880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g00880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	E3 ubiquitin-protein ligase Topors isoform X1
Location	Cp4.1LG17: 75337 .. 80119 (+)
RNA-Seq Expression	Cp4.1LG17g00880
Synteny	Cp4.1LG17g00880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGTCACCGATTTTTGCTGAACCCCGAGAAGGCCCAAAATACTGGTCTAACGATGGTGATCACTTTGGGCCTATAAATCACGATGGTGACCACTATACGTTTTGGGCCCATGGGCCCTATTTGGTTCAGGGATAGCGTTTGGGCTGGGCTGAAAATACATTTGGATGGAGGCCTAAATATGGCCCAATAATCCGTGATAGGTTTGAGCCTTGAAAGTCTGTTTCTCTCCTACCTGGCACAGTATGCTGGTGGGGAAAATCATGAAGCATTCGACCCGAGAACCGGCGCGAAATCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGTGAAACCTGCCNCTTAATTACGGCCCAATAATCCGTGATAGGTTTGAGCCTTGAAAGTCTGTTTCTCTCCCACCTGGCACAGTATGCTGGTGGGGAAAATCATGGAGCATTCGACCCGAGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGAGAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCATAGGGTGTATTCGAAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCACAATCAAGCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGTACCGACGCTCGCAGGTGTGTGTGTATGTGTGTTTCTGTAACTCTGATATGTCTGTATCGCAGCTAATTTTGTTTTAAAATTGATCACTTCTGCTTGAATTGAACATATAAGCTAATACGGAGAACTGAGTGCTGTAGTTAGTTTTAATCGAGGACTGATTTGATCATTAAACTTGGAATTATATTTGTTCCCCTCACTTTTATTTAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAAAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGAAAGGTAACTTCTCGGTTTATTTACCTGGTTGGATGCTGCAGCTATAGCTTTCACCTTGTTGTCCATGTTTAGAGTTAGAGCTTGAATGTTGTTGCTAATATTCCGTTGGGTTATGATCTGACACAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGGTATGCATTTTAATCCTTAACTACGAGTTATCTGATGATTTTACATGAAGTCTGGTTGCTGGTAGGAGTTGCTAAACTGATTCTTTCCTCTTTTAACTTGAAGTTTATTACCTCACATACAGTTCATGGGGCTAATCCCTTGCTTCGAAATTGAGGGCACTTTTTCTCAACCAAATACATTGCTTGAACTTTCTCTTTAGTTTTTTGTGTTATTGAGAATTCGAAACTCTAGCCTTTTCAGTTGAGATATAAAATCTTAACCACTTGAGTTATACTCAACTTGTCAATTATGTAAATAATTAATAATTTTCTCTCTTCGGTTGCGTACAACGAAGGTGCAAATTCGTCATTGGGTACAAGTGCAATTCTGTTAGTTTAGTTCTTATTCTGTGTGCGTGACTGCGTGTTGTGCAGAACTTAACAGTAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGGTACTTTACTCACTGTTCAATATTTCAAGTTCTCGTGTTTTTTCCCTGATGCATCTAAATTTTGAAATGAATGTAAGATTTCTTGAGTATTGAGTTCTGGTAGCCCACTCACAGAAGTAGGATTTATTGAGAGTGTTGTTCACCGCTAGATTCAGTAACAATACCGTATACTAGAGAATTGGCGACCAGGAATTGCAAGACCATTGTATCTGCCCTTAAACTGAAACCCAGTTGATTTGAAGTAAATTTTCCTTATTACTCTCAATCTTTTTTGGTGCTCTTATCCCATTTGTTCCAAATGCCTCTAGCTCGAATGCAATAATACAACTAATCCCATCTCCTTTCAAGCAACGCCCGAGACTATCCTTGGATATTAATACCCGAGAATTTCCGACCAGGAATTGCATGACCATTGTCTCTGCCAGCTGAAACCCAGATGATTTCAAGTAAATTTTCCATATTACTCAATATTTTTTGGTTCCCTTGTCCCATTTGTACTGATTTCCTCTAGGATGCAATAATATAACTAATCCCCACCTCCTTTCAAGCAATGTCCCAGACTATCCTTGGCTATTGACTTACTGTATTAACTTGCTCAGAGCAACCCTCTTATATATGAAGTAAGAAAATGCAGGAATGGATTTTGATAGAATTCAGAGAAATGAAAATCCGAATTATATTGATGACTTGCCAAATAAGAAAATACAGAAGAATGTCGAGTATTTTGAGAATCTTGGACCCCTCCCTCTTGGGTGTACTCGAGCACAAACAACTAAATTATTGCTCGCCTTCATCCCCTCCTACTAACAAAACTTATGATGGCCACCTACCTAAGAAATTAAAATATCACGAGTTCCTTTACAACCAAAGAAACTTCTAGCTAATGACTATTATGCCCTTGGTATCCGAATAACATTTCTTACTTTTTCCCAATGGTCTTCCTAACATAATTCCTACTGGTTCGCTCTATCATAAAGCTCCCGTGAGTAGTGTTTGTTTCTTTATCGCAATACAAAACTGCATCTTTTATGATCAATCATTTTTCTACTGCCATTTTTATTTAGAAAGTTTCCCTCTCAGATGTTTTGCAGGAAGTTCATTACGCATGGAAGAGTATGATTCTGTGGTTGAATATAGAACCATGGATTCGTTGTAGCGAAGATTCTGTTTGAAGAGGTATGTTATACTCATGACTCTCTCCTGTGGGTTGCTGGTTATACTTGAAATGAATTGTGACATTCATATGAAGTAAATGTTATAGCAAGGTACCAGAATCGTGGCATGGGTGCAATTTCTTATTCTTACGTTATCCTGTATGAAAGAACTAAGATATCTTCTGCTGCCGAAGATTATAAACACGATCTGCAGTTCGGGTGTGTTAGTTTGGTGCATCTTTTCCCACACGTCGCTTACATTGATTTCTCAATGATTTCCATTCGACCTGCAAATCATTTGGGAGAAGACTGTTTGAGGATACATTTTATAATGATCTTCTCTCTGGTTGTGGGATGGTCTCCCCAACAACGAATGGATTGGGGTCGTTGCTCGATCGGGGTCGTTTTTCTAGCCTGACCTGGAAGAAAGACACTTGGAAACAGAGATTATGTAGCCTGCACGCCACCACATAGGCTCTGAAGATAGTATTGTGTTTTTAGTATTCATACGTTTTATTTCTTTTGCACCCAAATCGTCCCGTTAAATAGTGTCTGTAATTGACTCGTTGCTGATTGAGCCTTCCCCGTCCTTACTTCACCCCGTGGACAGCTCCAAGTGTAATGGACTTGATGCTTGATTACTTTATATTAGTACTTCCATTGCTTTGTGGCTCATGTATTTATTCGAACATTTTCAAATCTTTCTTTGTGGAAGTCTTTTTCTTCCCATCCTAGATTATATTCCATGGCTGCATGCCTAAGATCTATGCTTGGTATATTGCCTTCTTTTCAAATTTCTCTGTCCTGTTTTCTAAAACTTTTTTTTCAAAATGAGTTTTTCAAAACGGGCCCAAAGGCTTGAACATAAGTTGTCTAGCCGTAGGCGACGTGATCATAAGTTAAGTGACTTAACTCGAAAGTTGGTTTATCTCACTTTAACTTAACTCTAAAGTTAGACTTATCCTACTTGGTGCTGAGAAAGTGTATAGGTTTAAATGAGAGAGTGTATAGGTTTAAATAACAAAATAAAAATAGGGTATAAGAAATTTCACAAAAATCAACATGAAGAGATGAGAATGAAGAGATGAGAATGAAGAGATGAGAAGCTAATTGAAGCTTTTCACTGACTTTGAACGTTGTTCTCAATTTGAAAATTGGGTGAGCCCTAGTCCAATTCACTCTTTTGCTTGAGAATTGGGTGAGCCCTAGTTCAATTCACTCTTTTCCTTAAGCGAGGCCGGGCGGGATTATCTTATTGTTCTTCAAAATTCGGCTTCAATGTCTAAGTTCCTCTGCAAAACCCTACTTCAGGTTCGGCATCTCACCACGATTTCGCCATATTCAAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCGCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCATTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTAATATCTCGTTCATTATCTGGAAATACCCCCGGGTTCTGCTATCTAATCCGAATGGAACTCTTTTGCCTAAGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAA

mRNA sequence

ATGAATATCTGTTTCTCTCCTACCTGGCACAGTATGCTGGTGGGGAAAATCATGAAGCATTCGACCCGAGAACCGGCGCGAAATCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGTCTGTTTCTCTCCCACCTGGCACAGTATGCTGGTGGGGAAAATCATGGAGCATTCGACCCGAGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGAGAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCATAGGGTGTATTCGAAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCACAATCAAGCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGTACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAAAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGAAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGTAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGCGAGGCCGGGCGGGATTATCTTATTGTTCTTCAAAATTCGGCTTCAATGTCTAAGTTCCTCTGCAAAACCCTACTTCAGGTTCGGCATCTCACCACGATTTCGCCATATTCAAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCGCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCATTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTAATATCTCGTTCATTATCTGGAAATACCCCCGGGTTCTGCTATCTAATCCGAATGGAACTCTTTTGCCTAAGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAA

Coding sequence (CDS)

ATGAATATCTGTTTCTCTCCTACCTGGCACAGTATGCTGGTGGGGAAAATCATGAAGCATTCGACCCGAGAACCGGCGCGAAATCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGTCTGTTTCTCTCCCACCTGGCACAGTATGCTGGTGGGGAAAATCATGGAGCATTCGACCCGAGAACCGGCGCGAAAGCTTAACGGCGAAAACTTCGTAGTGAAGGTAATTTCGCCGGCAATCTGCGGAGAAACCTGCCCAATTTGTCTCCGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCATAGGGTGTATTCGAAAATGGAGCAATTTGAAGCGAACCTGCCCTCTCTGTAACGCTCAATTCGATTCATGGTTCTGCACAATCAAGCTCTCATCGCGAAGCTTCCGGAAAGAAAGATTGCCAAACTTGAATTGTGCCGACAATCTCAAGATTGGAATCGGATCATCCCGTACCGACGCTCGCAGGATTCTTCAGAGCACAAGGAATGAATTGAGCAGAGATAGACGGTCGGAAAGACCACTGACATGGCGGCGTTCATTTGGCCGGCGAGGGCCGGAATCTGTACCTACTGATGTTATTGCCTGGCGAAAACTTCAATGGCGAGAAAGCATATACGACCGACGTATACAAGCTGTCCCATCTTCGGTCAGATCATGTTTAGTAATGAACTTAACAGTAAGTCATGGAGTCAAAGAAGCAATACTAGAAAGGATTAAACCATGGATACAAAGAGAGTTGGAGGCCATCCTTGGGGACCCAGATCCAACTATAATTGTTCATCTGGTTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAAATGACTTCCTTTCGCCTTTGCGGCCGTTCCTCTATGAAAAAACTGATTTGTTTTGGCATGAATTAAGCGAGGCCGGGCGGGATTATCTTATTGTTCTTCAAAATTCGGCTTCAATGTCTAAGTTCCTCTGCAAAACCCTACTTCAGGTTCGGCATCTCACCACGATTTCGCCATATTCAAAGCTCCGCTGTGTTCAATCACTCCACTTCAACTACAGCACTGTCGCTTCCGATTCACATTCTTTTACGGTTTCGTATCTCATAAACTCATGCTCGTTGTCTCCTGAATCTGCTTCATCTGCTTCAAAGCTCGTTAGCTTCATTTCTCCTGAAAAACCAGATTTGGTGATCTCTTTCTTCAAGAATCACGGCTTTTCTATTGCTAATATCTCGTTCATTATCTGGAAATACCCCCGGGTTCTGCTATCTAATCCGAATGGAACTCTTTTGCCTAAGCTTGAGTTTCTTTACACCAGAGGTGCTTCGAGTTCCGAA

Protein sequence

MNICFSPTWHSMLVGKIMKHSTREPARNLNGENFVVKVISPAICVCFSPTWHSMLVGKIMEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAENDFLSPLRPFLYEKTDLFWHELSEAGRDYLIVLQNSASMSKFLCKTLLQVRHLTTISPYSKLRCVQSLHFNYSTVASDSHSFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFIIWKYPRVLLSNPNGTLLPKLEFLYTRGASSSE

Homology

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BLAST of Cp4.1LG17g00880 vs. ExPASy Swiss-Prot
Match: Q80Z37 (E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-11
Identity = 75/270 (27.78%), Postives = 115/270 (42.59%), Query Frame = 0


Query: 90  CPICLRELEDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFR 149
           CPICL   ++   + L  C+H +C  C+++WS  K  CPLC   FDS F +++       
Sbjct: 104 CPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVRAEDDFKE 163

Query: 150 KERLPNLNCA-DNLKIGIGSSRTDARR----ILQSTRNELSRDRR--------------S 209
               P+ N +  N ++     RT   R     L S  + +SR                 S
Sbjct: 164 YVLRPSYNGSFTNPEVRRFRYRTTMTRERSASLYSPSSTVSRRTTTPPDSGVLFEGLGIS 223

Query: 210 ERPL-----TWRRSFGRRGPESVPTDVIAWRKLQWRESI-YDRRIQAVPSSVRSC----L 269
            RP       + R    RGP +  TD  + RK+Q ++ I + R +      VRS      
Sbjct: 224 TRPRDVDIPQFMRQMALRGPTT--TDERSLRKIQEQDIINFRRTLYRAGVRVRSIEDGGR 283

Query: 270 VMNLTVSHGVKE-AILERIKPWIQRELEAILGDPDP--TIIVHLVTSLFVARLEAPSSQL 328
             +++     +  A L R+ PW++REL  + G       I+ H++ S  V R +  S   
Sbjct: 284 YRDISAEFFRRNPACLHRLVPWLKRELTVLFGAHGSLVNIVQHIIMS-NVTRYDLESQA- 343

[Close]

BLAST of Cp4.1LG17g00880 vs. ExPASy Swiss-Prot
Match: Q9NS56 (E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.2e-10
Identity = 72/276 (26.09%), Postives = 110/276 (39.86%), Query Frame = 0


Query: 90  CPICLRELEDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFR 149
           CPICL   ++   + L  C+H +C  C+++WS  K  CPLC   FDS F +++       
Sbjct: 103 CPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVRAEDDFKE 162

Query: 150 KERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSR-----------DRRSERPLTWRR 209
               P+ N         GS  T  RR    T     R           +RR+  P     
Sbjct: 163 YVLRPSYN---------GSFVTPDRRFRYRTTLTRERNASVYSPSGPVNRRTTTPPDSGV 222

Query: 210 SFGRRGPESVPTDV-------------------IAWRKLQWRESI-YDRRIQAVPSSVRS 269
            F   G  + P DV                    + RK+Q ++ I + R +    + VR+
Sbjct: 223 LFEGLGISTRPRDVEIPQFMRQIAVRRPTTADERSLRKIQEQDIINFRRTLYRAGARVRN 282

Query: 270 C----LVMNLTVSHGVKE-AILERIKPWIQRELEAILGDPDP--TIIVHLVTSLFVARLE 328
                   +++     +  A L R+ PW++REL  + G       I+ H++ S  V R +
Sbjct: 283 IEDGGRYRDISAEFFRRNPACLHRLVPWLKRELTVLFGAHGSLVNIVQHIIMS-NVTRYD 342

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BLAST of Cp4.1LG17g00880 vs. ExPASy Swiss-Prot
Match: P08393 (E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 1 (strain 17) OX=10299 GN=ICP0 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-05
Identity = 18/47 (38.30%), Postives = 27/47 (57.45%), Query Frame = 0


Query: 87  GETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQ 134
           G+ C +C  E+          C+H +CI C++ W  L+ TCPLCNA+
Sbjct: 113 GDVCAVCTDEIAPHLRCDTFPCMHRFCIPCMKTWMQLRNTCPLCNAK 159

[Close]

BLAST of Cp4.1LG17g00880 vs. ExPASy Swiss-Prot
Match: P28284 (E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 2 (strain HG52) OX=10315 GN=RL2 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-04
Identity = 17/45 (37.78%), Postives = 25/45 (55.56%), Query Frame = 0


Query: 87  GETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCN 132
           G+ C +C  E+          C+H +CI C++ W  L+ TCPLCN
Sbjct: 123 GDVCAVCTDEIAPPLRCQSFPCLHPFCIPCMKTWIPLRNTCPLCN 167

[Close]

BLAST of Cp4.1LG17g00880 vs. ExPASy Swiss-Prot
Match: Q5BIY5 (RING finger protein 145 OS=Xenopus laevis OX=8355 GN=rnf145 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-04
Identity = 20/49 (40.82%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 88  ETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQFDS 137
           + C IC    +D  +AV+T C H +  GC++KW  ++ TCPLC+ Q  S
Sbjct: 535 DICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLCHCQLKS 580

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BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match: XP_023514952.1 (E3 ubiquitin-protein ligase Topors [Cucurbita pepo subsp. pepo])

HSP 1 Score: 540 bits (1390), Expect = 7.05e-190
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 60  MEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRK 119
           MEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRK
Sbjct: 1   MEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRK 60

Query: 120 WSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQS 179
           WSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQS
Sbjct: 61  WSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQS 120

Query: 180 TRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSC 239
           TRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSC
Sbjct: 121 TRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSC 180

Query: 240 LVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNA 299
           LVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNA
Sbjct: 181 LVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNA 240

Query: 300 ENDFLSPLRPFLYEKTDLFWHEL 322
           ENDFLSPLRPFLYEKTDLFWHEL
Sbjct: 241 ENDFLSPLRPFLYEKTDLFWHEL 263

[Close]

BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match: XP_022999966.1 (E3 ubiquitin-protein ligase Topors isoform X1 [Cucurbita maxima])

HSP 1 Score: 533 bits (1373), Expect = 3.15e-187
Identity = 260/269 (96.65%), Postives = 263/269 (97.77%), Query Frame = 0


Query: 54  MLVGKIMEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC 113
           ML GKIM+HST EPARKLNGENFVVKVISPAICG+TCPICLRELEDRTAAVLTTCIHAYC
Sbjct: 1   MLEGKIMKHSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYC 60

Query: 114 IGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 173
           +GCIRKWSNLKRTCPLCNAQFDSWFC I LSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 174 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVP 233
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWR SIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 234 SSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 293
           SSVRSCLVMNLT SHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 240

Query: 294 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 322
           SSQLNAENDFLSPLRPFLYEKTDLFWHEL
Sbjct: 241 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 269

[Close]

BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match: KAG6593954.1 (E3 ubiquitin-protein ligase Topors, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 532 bits (1371), Expect = 6.34e-187
Identity = 261/269 (97.03%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 54  MLVGKIMEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC 113
           MLVGKIM HSTREPARKL GENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC
Sbjct: 1   MLVGKIMNHSTREPARKLYGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC 60

Query: 114 IGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 173
           +GCIRKWSNLKRTCPLCNAQFDSWF  IKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 174 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVP 233
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWR SIYDRRIQA P
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAAP 180

Query: 234 SSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 293
           SSVRSCLVMNLT SHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 240

Query: 294 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 322
           SSQLNAENDFLSPLRPFLYEKTDLFWHEL
Sbjct: 241 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 269

[Close]

BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match: XP_022930345.1 (E3 ubiquitin-protein ligase Topors isoform X1 [Cucurbita moschata] >XP_022930347.1 E3 ubiquitin-protein ligase Topors isoform X1 [Cucurbita moschata])

HSP 1 Score: 530 bits (1365), Expect = 5.18e-186
Identity = 260/269 (96.65%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 54  MLVGKIMEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC 113
           MLVGKI +HST EPARKLNGENFVVKVISPAICGETCPICLRELEDR AAVLTTCIHAYC
Sbjct: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60

Query: 114 IGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 173
           +GCIRKWSNLKRTCPLCNAQFDSWF  IKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 174 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVP 233
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWR SIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 234 SSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 293
           SSVRSCLVMNLT SHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 240

Query: 294 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 322
           SSQLNAENDFLSPLRPFLYEKTDLFWHEL
Sbjct: 241 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 269

[Close]

BLAST of Cp4.1LG17g00880 vs. NCBI nr
Match: KAG7026294.1 (E3 ubiquitin-protein ligase Topors, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 518 bits (1335), Expect = 1.51e-181
Identity = 254/263 (96.58%), Postives = 255/263 (96.96%), Query Frame = 0


Query: 60  MEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRK 119
           M HSTREPARKL GENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC+GCIRK
Sbjct: 1   MNHSTREPARKLYGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCVGCIRK 60

Query: 120 WSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQS 179
           WSNLKRTCPLCNAQFDSWF  IKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQS
Sbjct: 61  WSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQS 120

Query: 180 TRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSC 239
           TRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWR SIYDR IQA PSSVRSC
Sbjct: 121 TRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRCIQAAPSSVRSC 180

Query: 240 LVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNA 299
           LVMNLT SHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNA
Sbjct: 181 LVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNA 240

Query: 300 ENDFLSPLRPFLYEKTDLFWHEL 322
           ENDFLSPLRPFLYEKTDLFWHEL
Sbjct: 241 ENDFLSPLRPFLYEKTDLFWHEL 263

[Close]

BLAST of Cp4.1LG17g00880 vs. ExPASy TrEMBL
Match: A0A6J1KEK6 (E3 ubiquitin-protein ligase Topors isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494293 PE=4 SV=1)

HSP 1 Score: 533 bits (1373), Expect = 1.52e-187
Identity = 260/269 (96.65%), Postives = 263/269 (97.77%), Query Frame = 0


Query: 54  MLVGKIMEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC 113
           ML GKIM+HST EPARKLNGENFVVKVISPAICG+TCPICLRELEDRTAAVLTTCIHAYC
Sbjct: 1   MLEGKIMKHSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYC 60

Query: 114 IGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 173
           +GCIRKWSNLKRTCPLCNAQFDSWFC I LSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 174 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVP 233
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWR SIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 234 SSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 293
           SSVRSCLVMNLT SHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 240

Query: 294 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 322
           SSQLNAENDFLSPLRPFLYEKTDLFWHEL
Sbjct: 241 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 269

[Close]

BLAST of Cp4.1LG17g00880 vs. ExPASy TrEMBL
Match: A0A6J1EQ79 (E3 ubiquitin-protein ligase Topors isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436818 PE=4 SV=1)

HSP 1 Score: 530 bits (1365), Expect = 2.51e-186
Identity = 260/269 (96.65%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 54  MLVGKIMEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC 113
           MLVGKI +HST EPARKLNGENFVVKVISPAICGETCPICLRELEDR AAVLTTCIHAYC
Sbjct: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60

Query: 114 IGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 173
           +GCIRKWSNLKRTCPLCNAQFDSWF  IKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 174 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVP 233
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWR SIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 234 SSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 293
           SSVRSCLVMNLT SHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 240

Query: 294 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 322
           SSQLNAENDFLSPLRPFLYEKTDLFWHEL
Sbjct: 241 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 269

[Close]

BLAST of Cp4.1LG17g00880 vs. ExPASy TrEMBL
Match: A0A6J1KC79 (E3 ubiquitin-protein ligase Topors isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494293 PE=4 SV=1)

HSP 1 Score: 450 bits (1157), Expect = 2.96e-155
Identity = 226/269 (84.01%), Postives = 229/269 (85.13%), Query Frame = 0


Query: 54  MLVGKIMEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC 113
           ML GKIM+HST EPARKLNGENFVVKVISPAICG+TCPICLRELEDRTAAVLTTCIHAYC
Sbjct: 1   MLEGKIMKHSTGEPARKLNGENFVVKVISPAICGQTCPICLRELEDRTAAVLTTCIHAYC 60

Query: 114 IGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 173
           +GCIRKWSNLKRTCPLCNAQFDSWFC I LSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFCKINLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 174 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVP 233
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWR SIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 234 SSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 293
           SSVRSCLVMNLT SHGVKEAILERIKPWIQRELEAI                        
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI------------------------ 235

Query: 294 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 322
                     LSPLRPFLYEKTDLFWHEL
Sbjct: 241 ----------LSPLRPFLYEKTDLFWHEL 235

[Close]

BLAST of Cp4.1LG17g00880 vs. ExPASy TrEMBL
Match: A0A6J1EUW6 (E3 ubiquitin-protein ligase Topors isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436818 PE=4 SV=1)

HSP 1 Score: 447 bits (1149), Expect = 4.85e-154
Identity = 226/269 (84.01%), Postives = 228/269 (84.76%), Query Frame = 0


Query: 54  MLVGKIMEHSTREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYC 113
           MLVGKI +HST EPARKLNGENFVVKVISPAICGETCPICLRELEDR AAVLTTCIHAYC
Sbjct: 1   MLVGKITKHSTPEPARKLNGENFVVKVISPAICGETCPICLRELEDRIAAVLTTCIHAYC 60

Query: 114 IGCIRKWSNLKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 173
           +GCIRKWSNLKRTCPLCNAQFDSWF  IKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA
Sbjct: 61  VGCIRKWSNLKRTCPLCNAQFDSWFSKIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDA 120

Query: 174 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVP 233
           RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWR SIYDRRIQAVP
Sbjct: 121 RRILQSTRNELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRASIYDRRIQAVP 180

Query: 234 SSVRSCLVMNLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAP 293
           SSVRSCLVMNLT SHGVKEAILERIKPWIQRELEAI                        
Sbjct: 181 SSVRSCLVMNLTGSHGVKEAILERIKPWIQRELEAI------------------------ 235

Query: 294 SSQLNAENDFLSPLRPFLYEKTDLFWHEL 322
                     LSPLRPFLYEKTDLFWHEL
Sbjct: 241 ----------LSPLRPFLYEKTDLFWHEL 235

[Close]

BLAST of Cp4.1LG17g00880 vs. ExPASy TrEMBL
Match: A0A1S3C7X8 (E3 ubiquitin-protein ligase Topors OS=Cucumis melo OX=3656 GN=LOC103497872 PE=4 SV=1)

HSP 1 Score: 443 bits (1140), Expect = 3.32e-152
Identity = 215/260 (82.69%), Postives = 234/260 (90.00%), Query Frame = 0


Query: 63  STREPARKLNGENFVVKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN 122
           STREPARKLNGENF+ KVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN
Sbjct: 6   STREPARKLNGENFITKVISPAICGETCPICLRELEDRTAAVLTTCIHAYCIGCIRKWSN 65

Query: 123 LKRTCPLCNAQFDSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRN 182
           LKRTCPLCNAQFDSWF  I LSS+SFRKERL   NC++ LK+G+GSS+TDAR ILQSTR 
Sbjct: 66  LKRTCPLCNAQFDSWFTKINLSSQSFRKERLKTSNCSEKLKVGVGSSQTDARGILQSTRY 125

Query: 183 ELSRDRRSERPLTWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVM 242
           EL+R+RRSER LTWRRSFGRRGP+S+P DV+  RKLQWR SIY+R IQAVPSSVRSCL +
Sbjct: 126 ELNRERRSERSLTWRRSFGRRGPDSLPADVVVRRKLQWRASIYNRCIQAVPSSVRSCLEL 185

Query: 243 NLTVSHGVKEAILERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAEND 302
           N+  + G KE ILERIKPWIQREL+ IL DPDPTIIVHLV SLFVARLEA SSQLNAE+D
Sbjct: 186 NILGNRGGKEVILERIKPWIQRELQVILEDPDPTIIVHLVISLFVARLEATSSQLNAEDD 245

Query: 303 FLSPLRPFLYEKTDLFWHEL 322
           FLSPLRPFL+EKTDLFWHEL
Sbjct: 246 FLSPLRPFLFEKTDLFWHEL 265

[Close]

BLAST of Cp4.1LG17g00880 vs. TAIR 10
Match: AT2G39100.1 (RING/U-box superfamily protein )

HSP 1 Score: 239.2 bits (609), Expect = 6.7e-63
Identity = 124/253 (49.01%), Postives = 166/253 (65.61%), Query Frame = 0


Query: 76  FVVKVISPAICGETCPICLREL-EDRTAAVLTTCIHAYCIGCIRKWSNLKRTCPLCNAQF 135
           F  + I PA+ G++CPICL  L E R+AAV+T C H YC+ CIRKWS+ KR CPLCN +F
Sbjct: 25  FAGRAIFPALQGKSCPICLENLTERRSAAVITVCKHGYCLACIRKWSSFKRNCPLCNTRF 84

Query: 136 DSWFCTIKLSSRSFRKERLPNLNCADNLKIGIGSSRTDARRILQSTRNELSRDRRSERPL 195
           DSWF     +SR + KE+LP L   + L     ++ +D RRI+Q +R+ L       RPL
Sbjct: 85  DSWFIVSDFASRKYHKEQLPILRDRETLTYH-RNNPSDRRRIIQRSRDVLENSSSRSRPL 144

Query: 196 TWRRSFGRRGPESVPTDVIAWRKLQWRESIYDRRIQAVPSSVRSCLVMNLTVSHGVKEAI 255
            WRRSFGR  P SVP  VI  RKLQWR SIY ++++AV    R  L ++L V+   K  I
Sbjct: 145 PWRRSFGR--PGSVPDSVIFQRKLQWRASIYTKQLRAVRLHSRR-LELSLAVNDYTKAKI 204

Query: 256 LERIKPWIQRELEAILGDPDPTIIVHLVTSLFVARLEAPSSQLNAE-----NDFLSPLRP 315
            ERI+PWI+REL+A+LGDPDP++IVH  ++LF+ RLE  +++   +      D +S LR 
Sbjct: 205 TERIEPWIRRELQAVLGDPDPSVIVHFASALFIKRLERENNRQTGQTGMLVEDEVSSLRK 264

Query: 316 FLYEKTDLFWHEL 323
           FL +K D+FWHEL
Sbjct: 265 FLSDKVDIFWHEL 273

[Close]

BLAST of Cp4.1LG17g00880 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 80.1 bits (196), Expect = 5.2e-15
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 381 SFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFIIWKYPRV 440
           SFT++YLI+SC LSP+SA+ AS+ +   SPE+P+ V++  ++HGF+ A IS ++ K P +
Sbjct: 69  SFTLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVL 128

Query: 441 LLSNPNGTLLPKLEFLYTRGASSS 465
           LL+N    LLPKL F  + G S S
Sbjct: 129 LLANAESVLLPKLSFFLSIGVSKS 152

[Close]

BLAST of Cp4.1LG17g00880 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 79.7 bits (195), Expect = 6.8e-15
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 381 SFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFIIWKYPRV 440
           SFTVSYL++SC LS ESA S S+ V  +S +KPD V++ FK+HGF+   I+ +I  +PRV
Sbjct: 56  SFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRV 115

Query: 441 LLSNPNGTLLPKLEFLYTRGASSSE 466
           L  +P   + PKL F  + G S+S+
Sbjct: 116 LSLSPEDVISPKLMFFSSIGFSTSD 140

[Close]

BLAST of Cp4.1LG17g00880 vs. TAIR 10
Match: AT1G61980.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-14
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 375 VASDSHSFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFII 434
           V     SFTVSYL++S  L  + A S S+ VSF   + PD V++  ++HGF+ + IS I+
Sbjct: 46  VGRKGKSFTVSYLVDSLGLPKKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIV 105

Query: 435 WKYPRVLLSNPNGTLLPKLEFLYTRGASSSE 466
             YP++L+++   +L PKL+FL +RGASSSE
Sbjct: 106 TDYPQLLVADAEKSLAPKLQFLQSRGASSSE 136

[Close]

BLAST of Cp4.1LG17g00880 vs. TAIR 10
Match: AT1G62110.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-14
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 381 SFTVSYLINSCSLSPESASSASKLVSFISPEKPDLVISFFKNHGFSIANISFIIWKYPRV 440
           +FTVSYL++S  L+ + A S SK VSF++   PDLV+S F+++GF+ + IS II  YPR+
Sbjct: 52  NFTVSYLVDSLGLATKLAESISKKVSFVNKGNPDLVLSLFRSYGFTNSQISSIITDYPRL 111

Query: 441 LLSNPNGTLLPKLEFLYTRGASSSE 466
           LL +   +L  KL+FL +RGASS E
Sbjct: 112 LLIDAEKSLDIKLQFLESRGASSPE 136

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g00880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q80Z37	1.2e-11	27.78	E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1	[more]
Q9NS56	2.2e-10	26.09	E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1	[more]
P08393	1.2e-05	38.30	E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 1 (strain 17) OX=10299 GN=...	[more]
P28284	1.8e-04	37.78	E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 2 (strain HG52) OX=10315 G...	[more]
Q5BIY5	1.8e-04	40.82	RING finger protein 145 OS=Xenopus laevis OX=8355 GN=rnf145 PE=2 SV=1	[more]

BLAST of Cp4.1LG17g00880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514952.1	7.05e-190	100.00	E3 ubiquitin-protein ligase Topors [Cucurbita pepo subsp. pepo]	[more]
XP_022999966.1	3.15e-187	96.65	E3 ubiquitin-protein ligase Topors isoform X1 [Cucurbita maxima]	[more]
KAG6593954.1	6.34e-187	97.03	E3 ubiquitin-protein ligase Topors, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022930345.1	5.18e-186	96.65	E3 ubiquitin-protein ligase Topors isoform X1 [Cucurbita moschata] >XP_022930347...	[more]
KAG7026294.1	1.51e-181	96.58	E3 ubiquitin-protein ligase Topors, partial [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of Cp4.1LG17g00880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KEK6	1.52e-187	96.65	E3 ubiquitin-protein ligase Topors isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EQ79	2.51e-186	96.65	E3 ubiquitin-protein ligase Topors isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1KC79	2.96e-155	84.01	E3 ubiquitin-protein ligase Topors isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EUW6	4.85e-154	84.01	E3 ubiquitin-protein ligase Topors isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A1S3C7X8	3.32e-152	82.69	E3 ubiquitin-protein ligase Topors OS=Cucumis melo OX=3656 GN=LOC103497872 PE=4 ...	[more]

BLAST of Cp4.1LG17g00880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39100.1	6.7e-63	49.01	RING/U-box superfamily protein	[more]
AT5G07900.1	5.2e-15	47.62	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	6.8e-15	48.24	Mitochondrial transcription termination factor family protein	[more]
AT1G61980.1	1.5e-14	45.05	Mitochondrial transcription termination factor family protein	[more]
AT1G62110.1	2.0e-14	50.59	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 90..130 e-value: 4.0E-7 score: 39.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 89..131 e-value: 1.2E-8 score: 35.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 90..131 score: 12.99088
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 417..465 e-value: 1.2E-5 score: 24.4
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 87..192 e-value: 6.4E-12 score: 47.7
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 388..465 e-value: 2.7E-9 score: 38.5
None	No IPR available	PANTHER	PTHR46077	E3 UBIQUITIN-PROTEIN LIGASE TOPORS	coord: 80..362
None	No IPR available	PANTHER	PTHR46077:SF1	TOPOISOMERASE I-BINDING, ARGININE/SERINE-RICH A-RELATED	coord: 80..362
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 84..137
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 108..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g00880.1	Cp4.1LG17g00880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0046872	metal ion binding