Cp4.1LG17g00640 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g00640
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-H2 finger protein ATL2-like
Location	Cp4.1LG17: 239505 .. 240095 (+)
RNA-Seq Expression	Cp4.1LG17g00640
Synteny	Cp4.1LG17g00640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCGCCGCCGCGTCTGATGACGACGACGCCTTCTTCTCTCCGCCGTCAGACAAGCGCTACACTCTCAGCAGCGGAATTATACTCCGCGTAGTTATTGTACTGTTGTTCGTCGTTATTCTCATGATTTGTTTTCATCTCTACGTTCGATTGTACCTCTTCTCCCCCAGCCGCCGGCCATCTCGACCCCGCCGTCGCCCTCGTCCGCATTTTGTATTCACGGCTGAGCCACGTAGCGCCGCTCCGCCACGTGGTTTGCCGCAGTTGGTTATCAAATCCTTGCCTCTATTCGTTCACTCGGCGAAACCCGACTCGGATCCGATTTATTGCGCGGTTTGTTTATCTGAGTTCGAAGAGAACGAAACCGGGCGGGTTATCCCCACATGTAATCACAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTAAAATCCGAACCCGAATCTTCTACTAACCCGGTCGAGATAGTTGTGGAAGAACCCGATCGTGGTAACCCGGTTGAGGTGGACGACGTGTCGGAACACGGGCCTCGAGGGCAACGGAGAATTTAG

mRNA sequence

ATGGCCACCGCCGCCGCGTCTGATGACGACGACGCCTTCTTCTCTCCGCCGTCAGACAAGCGCTACACTCTCAGCAGCGGAATTATACTCCGCGTAGTTATTGTACTGTTGTTCGTCGTTATTCTCATGATTTGTTTTCATCTCTACGTTCGATTGTACCTCTTCTCCCCCAGCCGCCGGCCATCTCGACCCCGCCGTCGCCCTCGTCCGCATTTTGTATTCACGGCTGAGCCACGTAGCGCCGCTCCGCCACGTGGTTTGCCGCAGTTGGTTATCAAATCCTTGCCTCTATTCGTTCACTCGGCGAAACCCGACTCGGATCCGATTTATTGCGCGGTTTGTTTATCTGAGTTCGAAGAGAACGAAACCGGGCGGGTTATCCCCACATGTAATCACAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTAAAATCCGAACCCGAATCTTCTACTAACCCGGTCGAGATAGTTGTGGAAGAACCCGATCGTGGTAACCCGGTTGAGGTGGACGACGTGTCGGAACACGGGCCTCGAGGGCAACGGAGAATTTAG

Coding sequence (CDS)

ATGGCCACCGCCGCCGCGTCTGATGACGACGACGCCTTCTTCTCTCCGCCGTCAGACAAGCGCTACACTCTCAGCAGCGGAATTATACTCCGCGTAGTTATTGTACTGTTGTTCGTCGTTATTCTCATGATTTGTTTTCATCTCTACGTTCGATTGTACCTCTTCTCCCCCAGCCGCCGGCCATCTCGACCCCGCCGTCGCCCTCGTCCGCATTTTGTATTCACGGCTGAGCCACGTAGCGCCGCTCCGCCACGTGGTTTGCCGCAGTTGGTTATCAAATCCTTGCCTCTATTCGTTCACTCGGCGAAACCCGACTCGGATCCGATTTATTGCGCGGTTTGTTTATCTGAGTTCGAAGAGAACGAAACCGGGCGGGTTATCCCCACATGTAATCACAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTATTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTAAAATCCGAACCCGAATCTTCTACTAACCCGGTCGAGATAGTTGTGGAAGAACCCGATCGTGGTAACCCGGTTGAGGTGGACGACGTGTCGGAACACGGGCCTCGAGGGCAACGGAGAATTTAG

Protein sequence

MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPVEVDDVSEHGPRGQRRI

Homology

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BLAST of Cp4.1LG17g00640 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 2.4e-35
Identity = 89/181 (49.17%), Postives = 111/181 (61.33%), Query Frame = 0


Query: 6   ASDDDDAFFSPPSD-----KRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 65
           ++D D   F P  +     K Y +S  I+L  +++L FVVILM+  HLY R YL    RR
Sbjct: 3   SNDQDPIPFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRR 62

Query: 66  PSRPRRRPR--PHFVFTAEPRSAA----PPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVC 125
             R R R R      FTA+P +AA      RGL   VIKSLP+F  S +   DPI CAVC
Sbjct: 63  HLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVC 122

Query: 126 LSEFEENETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKS----EPESSTNPVEIV 172
           LSEFEE+ETGRV+P C H+FHV CIDMWF+SH TCPLCRS V+S    E  ++    E+V
Sbjct: 123 LSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVV 182

[Close]

BLAST of Cp4.1LG17g00640 vs. ExPASy Swiss-Prot
Match: Q8LF65 (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 68/153 (44.44%), Postives = 93/153 (60.78%), Query Frame = 0


Query: 29  ILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPRSAAPPRGLP 88
           +L   I++L +VILM+  HLY R YL       S P  R      F  +P S   P GL 
Sbjct: 1   MLTTTILILLIVILMVSLHLYYRWYLLR-----SSPFNRTTAASTFFTDPSST--PGGLN 60

Query: 89  QLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGRVIPTCNHSFHVGCIDMWFYSHVT 148
             +IKSLP+F  SA      + C+VCLSEF++NE+GRV+P C H+FHV CIDMWF+SH +
Sbjct: 61  PSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSS 120

Query: 149 CPLCRSEVK---SEPESSTNPVEIVVEEPDRGN 179
           CPLCRS+++      +SS + V I + +P  G+
Sbjct: 121 CPLCRSQIEPFAGGVKSSMDEVAISISDPVYGD 146

[Close]

BLAST of Cp4.1LG17g00640 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-24
Identity = 74/172 (43.02%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 22  YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHF-VFTAEPRS 81
           Y L+  I+L  VIVL   VI+++CFH Y R +LF   R   R RRR R H    +A PR 
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYAR-WLF--RRHNRRIRRRIRSHLRTLSASPRD 81

Query: 82  AAPPRGLPQLVIKSLPLFVHSAK---PDSDPIYCAVCLSEFEENETGRVIPTCNHSFHVG 141
            A    L Q V+  +P+FV+S+K   P  +   C+VCLSEFEE + GR++P C HSFHV 
Sbjct: 82  QA----LDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVD 141

Query: 142 CIDMWFYSHVTCPLCRSEV-------KSEPESSTNPVEIVVEEPDRGNPVEV 183
           CID WF S  TCPLCR+ V       ++   SS++P+    E  +R  P+++
Sbjct: 142 CIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPTEGCER-EPIDL 185

[Close]

BLAST of Cp4.1LG17g00640 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.3e-24
Identity = 73/182 (40.11%), Postives = 104/182 (57.14%), Query Frame = 0


Query: 21  RYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPR- 80
           RY+L+  I+L  VI+L   VIL++CFH Y R +LF   R+  R RRR   H    A  R 
Sbjct: 21  RYSLNGKIMLASVIILFVAVILILCFHSYAR-WLF--RRQNRRIRRRISAHLRSLAAARD 80

Query: 81  ---SAAPPRGLPQLVIKSLPLFVHSAKPDSDPI-YCAVCLSEFEENETGRVIPTCNHSFH 140
              S++    L   V++ +P+FV+S K    P+  C+VCLSEFEE++ GRV+P C H FH
Sbjct: 81  PTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFH 140

Query: 141 VGCIDMWFYSHVTCPLCRSEVK-SEPESSTNPVEIV------VEEPDRGNPVEVDDVSEH 191
           V CID WF S  +CPLCR+ V+ ++P +   PV  V      +E+ + G+    D+    
Sbjct: 141 VDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESESS 199

[Close]

BLAST of Cp4.1LG17g00640 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.1e-19
Identity = 59/173 (34.10%), Postives = 85/173 (49.13%), Query Frame = 0


Query: 24  LSSGIILRVVIVLLFVVILMICFHLYVRLYLF---------------------SPSRRPS 83
           ++S IIL  +IVL   V+ ++  HLY +LY +                       S  P 
Sbjct: 20  VTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPP 79

Query: 84  RPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENE 143
              RR R  F+F    + A    GL    + SLP+         D + C++CLSE  + +
Sbjct: 80  VVTRRQRRRFIF-VPGQDALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGD 139

Query: 144 TGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPD 176
             R++P CNHSFHV CIDMWF SH TCP+CR+ V    ++S+  VE V +  +
Sbjct: 140 KARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAE 191

[Close]

BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match: XP_023514956.1 (RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393 bits (1009), Expect = 7.51e-138
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPV 180
           NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPV
Sbjct: 121 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPV 180

Query: 181 EVDDVSEHGPRGQRRI 196
           EVDDVSEHGPRGQRRI
Sbjct: 181 EVDDVSEHGPRGQRRI 196

[Close]

BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match: XP_022930361.1 (RING-H2 finger protein ATL2-like [Cucurbita moschata])

HSP 1 Score: 381 bits (978), Expect = 4.01e-133
Identity = 190/196 (96.94%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MATAAASDDDD FFSPPSDK YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MATAAASDDDDGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPR+AAPPRGLPQLV+KSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVVKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPV 180
           NETGRVIP CNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGN V
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180

Query: 181 EVDDVSEHGPRGQRRI 196
           EVDDVSEHGPRGQRRI
Sbjct: 181 EVDDVSEHGPRGQRRI 196

[Close]

BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match: KAG7026323.1 (RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379 bits (972), Expect = 3.29e-132
Identity = 190/196 (96.94%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MATAAASDDDD FFSPPSDK YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MATAAASDDDDGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPR+AAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPV 180
           NETGRVIP CNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGN V
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180

Query: 181 EVDDVSEHGPRGQRRI 196
           EVDDVS HGPRGQRRI
Sbjct: 181 EVDDVSVHGPRGQRRI 196

[Close]

BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match: KAG6593982.1 (RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377 bits (967), Expect = 1.91e-131
Identity = 189/196 (96.43%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MATAAASDDD+ FFSPPSDK YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MATAAASDDDNGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPR+AAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPV 180
           NETGRVIP CNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGN V
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180

Query: 181 EVDDVSEHGPRGQRRI 196
           EVDDVS HGPRGQRRI
Sbjct: 181 EVDDVSVHGPRGQRRI 196

[Close]

BLAST of Cp4.1LG17g00640 vs. NCBI nr
Match: XP_023000152.1 (RING-H2 finger protein ATL2-like [Cucurbita maxima])

HSP 1 Score: 372 bits (955), Expect = 1.54e-129
Identity = 188/201 (93.53%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MA AAASDDDD FFSPPSDK YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MAAAAASDDDDGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPR+AAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPV 180
           NETGRVIP CNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNP+EIVVEEPDRGNPV
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPIEIVVEEPDRGNPV 180

Query: 181 EVDD-------VSEHGPRGQR 194
           EVDD       VSEHGPRGQR
Sbjct: 181 EVDDESREVADVSEHGPRGQR 201

[Close]

BLAST of Cp4.1LG17g00640 vs. ExPASy TrEMBL
Match: A0A6J1EQQ3 (RING-H2 finger protein ATL2-like OS=Cucurbita moschata OX=3662 GN=LOC111436830 PE=4 SV=1)

HSP 1 Score: 381 bits (978), Expect = 1.94e-133
Identity = 190/196 (96.94%), Postives = 192/196 (97.96%), Query Frame = 0


Query: 1   MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MATAAASDDDD FFSPPSDK YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MATAAASDDDDGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPR+AAPPRGLPQLV+KSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVVKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPV 180
           NETGRVIP CNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGN V
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNLV 180

Query: 181 EVDDVSEHGPRGQRRI 196
           EVDDVSEHGPRGQRRI
Sbjct: 181 EVDDVSEHGPRGQRRI 196

[Close]

BLAST of Cp4.1LG17g00640 vs. ExPASy TrEMBL
Match: A0A6J1KCT9 (RING-H2 finger protein ATL2-like OS=Cucurbita maxima OX=3661 GN=LOC111494436 PE=4 SV=1)

HSP 1 Score: 372 bits (955), Expect = 7.45e-130
Identity = 188/201 (93.53%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MATAAASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60
           MA AAASDDDD FFSPPSDK YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR
Sbjct: 1   MAAAAASDDDDGFFSPPSDKPYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 60

Query: 61  PSRPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120
           PSRPRRRPRPHFVFTAEPR+AAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE
Sbjct: 61  PSRPRRRPRPHFVFTAEPRTAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 120

Query: 121 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPDRGNPV 180
           NETGRVIP CNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNP+EIVVEEPDRGNPV
Sbjct: 121 NETGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPIEIVVEEPDRGNPV 180

Query: 181 EVDD-------VSEHGPRGQR 194
           EVDD       VSEHGPRGQR
Sbjct: 181 EVDDESREVADVSEHGPRGQR 201

[Close]

BLAST of Cp4.1LG17g00640 vs. ExPASy TrEMBL
Match: A0A6J1CAT0 (RING-H2 finger protein ATL2-like OS=Momordica charantia OX=3673 GN=LOC111009784 PE=4 SV=1)

HSP 1 Score: 238 bits (606), Expect = 1.44e-75
Identity = 126/180 (70.00%), Postives = 139/180 (77.22%), Query Frame = 0


Query: 6   ASDDDDAFFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPS-RP 65
           A DDDD FFSPPS KRY LS  I+L  +IVLLFVVILMIC HLYVRLYL S +RR + R 
Sbjct: 2   ADDDDDGFFSPPSYKRYALSGKIMLGAIIVLLFVVILMICLHLYVRLYLLSSNRRQAPRR 61

Query: 66  RRRPRPHFVFTAEPR----SAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 125
           RR  R HFVFTAEPR    +AAP RGLPQ ++KSLP+FVHSAKPD DPI CAVCLSEFEE
Sbjct: 62  RRHRRAHFVFTAEPRHAAAAAAPSRGLPQSILKSLPVFVHSAKPDPDPICCAVCLSEFEE 121

Query: 126 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNP-VEIVVEEPDRGNP 179
           NE GR+IP C HSFHVGCIDMWFYSHVTCPLCRSEV+ E  S   P V + + +PD   P
Sbjct: 122 NEIGRIIPKCKHSFHVGCIDMWFYSHVTCPLCRSEVQPETGSDNPPDVSVSIHDPDIPEP 181

[Close]

BLAST of Cp4.1LG17g00640 vs. ExPASy TrEMBL
Match: A0A6J1H376 (RING-H2 finger protein ATL2-like OS=Cucurbita moschata OX=3662 GN=LOC111459976 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 1.16e-72
Identity = 126/177 (71.19%), Postives = 136/177 (76.84%), Query Frame = 0


Query: 5   AASDDDDA--FFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPS 64
           AA DDDD    FSP S K Y LS  I+L  VIVLLFVVILMIC HLYVRLYL S SRR S
Sbjct: 2   AAEDDDDGGGLFSPSSFKSYALSGKIMLGAVIVLLFVVILMICLHLYVRLYLLSSSRRQS 61

Query: 65  RP--RRRPRPHFVFTAEPR-SAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFE 124
           R   RRR R  F FT EPR +AA  RGLPQ ++KSLP+FVHS KPD DP+YCAVCLSEFE
Sbjct: 62  RSHRRRRRRVQFEFTTEPRIAAASSRGLPQSILKSLPVFVHSMKPDPDPVYCAVCLSEFE 121

Query: 125 ENETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPES----STNPVEIVVE 172
           ENE GR IP CNHSFHVGCIDMWFYSHVTCPLCRSEVK EP S    S +PVE+V++
Sbjct: 122 ENEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSNDPVELVLD 178

[Close]

BLAST of Cp4.1LG17g00640 vs. ExPASy TrEMBL
Match: A0A6J1L074 (RING-H2 finger protein ATL2-like OS=Cucurbita maxima OX=3661 GN=LOC111499181 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 3.21e-72
Identity = 131/197 (66.50%), Postives = 142/197 (72.08%), Query Frame = 0


Query: 6   ASDDDDA--FFSPPSDKRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSR 65
           A DDDD    FSP S K Y LS  I+L  VIVLLFVVILMIC HLYVRLYL S SRR SR
Sbjct: 2   ADDDDDGGGLFSPSSFKSYALSGKIMLGTVIVLLFVVILMICLHLYVRLYLLSSSRRQSR 61

Query: 66  P--RRRPRPHFVFTAEPR-SAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEE 125
              RRR R  F FT EPR +AA  RGLP  ++K+LP+FVHS KPD DP+YCAVCLSEFEE
Sbjct: 62  SHRRRRRRVQFEFTTEPRIAAASSRGLPHSILKTLPVFVHSMKPDPDPVYCAVCLSEFEE 121

Query: 126 NETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPES----STNPVEIVVE---- 182
           NE GR IP CNHSFHVGCIDMWFYSHVTCPLCRSEVK EP S    S +PVEIV++    
Sbjct: 122 NEIGRTIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPEPGSESGPSDDPVEIVLDVCEP 181

[Close]

BLAST of Cp4.1LG17g00640 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-36
Identity = 89/181 (49.17%), Postives = 111/181 (61.33%), Query Frame = 0


Query: 6   ASDDDDAFFSPPSD-----KRYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRR 65
           ++D D   F P  +     K Y +S  I+L  +++L FVVILM+  HLY R YL    RR
Sbjct: 3   SNDQDPIPFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRR 62

Query: 66  PSRPRRRPR--PHFVFTAEPRSAA----PPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVC 125
             R R R R      FTA+P +AA      RGL   VIKSLP+F  S +   DPI CAVC
Sbjct: 63  HLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVC 122

Query: 126 LSEFEENETGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKS----EPESSTNPVEIV 172
           LSEFEE+ETGRV+P C H+FHV CIDMWF+SH TCPLCRS V+S    E  ++    E+V
Sbjct: 123 LSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVV 182

[Close]

BLAST of Cp4.1LG17g00640 vs. TAIR 10
Match: AT4G15975.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 6.1e-26
Identity = 67/153 (43.79%), Postives = 92/153 (60.13%), Query Frame = 0


Query: 29  ILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPRSAAPPRGLP 88
           +L   I++L +VILM+  HLY R YL       S P  R      F  +P S   P GL 
Sbjct: 1   MLTTTILILLIVILMVSLHLYYRWYLLR-----SSPFNRTTAASTFFTDPSST--PGGLN 60

Query: 89  QLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENETGRVIPTCNHSFHVGCIDMWFYSHVT 148
             +IKSLP+F  SA      + C+VCLSEF++NE+GRV+P C H+FHV CIDMWF+SH +
Sbjct: 61  PSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFHSHSS 120

Query: 149 CPLCRSEVK---SEPESSTNPVEIVVEEPDRGN 179
           CPLCRS ++      +S+ + V I + +P  G+
Sbjct: 121 CPLCRSLIEPFAGGVKSTMDEVAISISDPVYGD 146

[Close]

BLAST of Cp4.1LG17g00640 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-25
Identity = 74/172 (43.02%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 22  YTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHF-VFTAEPRS 81
           Y L+  I+L  VIVL   VI+++CFH Y R +LF   R   R RRR R H    +A PR 
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYAR-WLF--RRHNRRIRRRIRSHLRTLSASPRD 81

Query: 82  AAPPRGLPQLVIKSLPLFVHSAK---PDSDPIYCAVCLSEFEENETGRVIPTCNHSFHVG 141
            A    L Q V+  +P+FV+S+K   P  +   C+VCLSEFEE + GR++P C HSFHV 
Sbjct: 82  QA----LDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVD 141

Query: 142 CIDMWFYSHVTCPLCRSEV-------KSEPESSTNPVEIVVEEPDRGNPVEV 183
           CID WF S  TCPLCR+ V       ++   SS++P+    E  +R  P+++
Sbjct: 142 CIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPTEGCER-EPIDL 185

[Close]

BLAST of Cp4.1LG17g00640 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 112.1 bits (279), Expect = 5.2e-25
Identity = 73/182 (40.11%), Postives = 104/182 (57.14%), Query Frame = 0


Query: 21  RYTLSSGIILRVVIVLLFVVILMICFHLYVRLYLFSPSRRPSRPRRRPRPHFVFTAEPR- 80
           RY+L+  I+L  VI+L   VIL++CFH Y R +LF   R+  R RRR   H    A  R 
Sbjct: 21  RYSLNGKIMLASVIILFVAVILILCFHSYAR-WLF--RRQNRRIRRRISAHLRSLAAARD 80

Query: 81  ---SAAPPRGLPQLVIKSLPLFVHSAKPDSDPI-YCAVCLSEFEENETGRVIPTCNHSFH 140
              S++    L   V++ +P+FV+S K    P+  C+VCLSEFEE++ GRV+P C H FH
Sbjct: 81  PTQSSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFH 140

Query: 141 VGCIDMWFYSHVTCPLCRSEVK-SEPESSTNPVEIV------VEEPDRGNPVEVDDVSEH 191
           V CID WF S  +CPLCR+ V+ ++P +   PV  V      +E+ + G+    D+    
Sbjct: 141 VDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSSDESESS 199

[Close]

BLAST of Cp4.1LG17g00640 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 5.0e-20
Identity = 59/173 (34.10%), Postives = 85/173 (49.13%), Query Frame = 0


Query: 24  LSSGIILRVVIVLLFVVILMICFHLYVRLYLF---------------------SPSRRPS 83
           ++S IIL  +IVL   V+ ++  HLY +LY +                       S  P 
Sbjct: 20  VTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPP 79

Query: 84  RPRRRPRPHFVFTAEPRSAAPPRGLPQLVIKSLPLFVHSAKPDSDPIYCAVCLSEFEENE 143
              RR R  F+F    + A    GL    + SLP+         D + C++CLSE  + +
Sbjct: 80  VVTRRQRRRFIF-VPGQDALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGD 139

Query: 144 TGRVIPTCNHSFHVGCIDMWFYSHVTCPLCRSEVKSEPESSTNPVEIVVEEPD 176
             R++P CNHSFHV CIDMWF SH TCP+CR+ V    ++S+  VE V +  +
Sbjct: 140 KARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAE 191

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g00640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9T5	2.4e-35	49.17	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q8LF65	1.3e-25	44.44	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2	[more]
O22255	2.5e-24	43.02	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q9LZJ6	7.3e-24	40.11	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
Q9XF63	7.1e-19	34.10	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1	[more]

BLAST of Cp4.1LG17g00640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514956.1	7.51e-138	100.00	RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930361.1	4.01e-133	96.94	RING-H2 finger protein ATL2-like [Cucurbita moschata]	[more]
KAG7026323.1	3.29e-132	96.94	RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6593982.1	1.91e-131	96.43	RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023000152.1	1.54e-129	93.53	RING-H2 finger protein ATL2-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG17g00640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQQ3	1.94e-133	96.94	RING-H2 finger protein ATL2-like OS=Cucurbita moschata OX=3662 GN=LOC111436830 P...	[more]
A0A6J1KCT9	7.45e-130	93.53	RING-H2 finger protein ATL2-like OS=Cucurbita maxima OX=3661 GN=LOC111494436 PE=...	[more]
A0A6J1CAT0	1.44e-75	70.00	RING-H2 finger protein ATL2-like OS=Momordica charantia OX=3673 GN=LOC111009784 ...	[more]
A0A6J1H376	1.16e-72	71.19	RING-H2 finger protein ATL2-like OS=Cucurbita moschata OX=3662 GN=LOC111459976 P...	[more]
A0A6J1L074	3.21e-72	66.50	RING-H2 finger protein ATL2-like OS=Cucurbita maxima OX=3661 GN=LOC111499181 PE=...	[more]

BLAST of Cp4.1LG17g00640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16720.1	1.7e-36	49.17	TOXICOS EN LEVADURA 2	[more]
AT4G15975.1	6.1e-26	43.79	RING/U-box superfamily protein	[more]
AT2G47560.1	1.8e-25	43.02	RING/U-box superfamily protein	[more]
AT3G62690.1	5.2e-25	40.11	AtL5	[more]
AT1G72310.1	5.0e-20	34.10	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 111..152 e-value: 1.7E-6 score: 37.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 110..153 e-value: 2.1E-11 score: 44.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 111..153 score: 12.563043
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 89..163 e-value: 9.1E-19 score: 68.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..196
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 20..173
None	No IPR available	PANTHER	PTHR45768:SF34	RING-H2 FINGER PROTEIN ATL64	coord: 20..173
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 111..153 e-value: 6.28667E-16 score: 66.5647
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 91..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g00640.1	Cp4.1LG17g00640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane