Cp4.1LG17g00430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g00430
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptiontranscription factor MYB111-like
LocationCp4.1LG17: 330281 .. 330574 (-)
RNA-Seq ExpressionCp4.1LG17g00430
SyntenyCp4.1LG17g00430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCAAAAGTAGAGGAAAAGGAAACTTGGGAACTGGGATCAAATGAATTGATCGATGAAACAATAAAAGGTATCGACGAGAGAGAAAATAGTGTTTGGAGTTCAAATATAGAGAGCGAGGAGTTGTACTATTCTTCTGCGTGGGCTTCATCAATCAATTCCAATTTCAACAGCGAATGGCTCAATTGGAACTGGGAAGATGACGGGGGGGTCTTAGGTCAGAATTTCAAAGAACCATCATCTTGGTTTTATTGGGCGAATACCAATGGGAAAGGAGAAGAATGTCTTTGA

mRNA sequence

ATGGATCCAAAAGTAGAGGAAAAGGAAACTTGGGAACTGGGATCAAATGAATTGATCGATGAAACAATAAAAGGTATCGACGAGAGAGAAAATAGTGTTTGGAGTTCAAATATAGAGAGCGAGGAGTTGTACTATTCTTCTGCGTGGGCTTCATCAATCAATTCCAATTTCAACAGCGAATGGCTCAATTGGAACTGGGAAGATGACGGGGGGGTCTTAGGTCAGAATTTCAAAGAACCATCATCTTGGTTTTATTGGGCGAATACCAATGGGAAAGGAGAAGAATGTCTTTGA

Coding sequence (CDS)

ATGGATCCAAAAGTAGAGGAAAAGGAAACTTGGGAACTGGGATCAAATGAATTGATCGATGAAACAATAAAAGGTATCGACGAGAGAGAAAATAGTGTTTGGAGTTCAAATATAGAGAGCGAGGAGTTGTACTATTCTTCTGCGTGGGCTTCATCAATCAATTCCAATTTCAACAGCGAATGGCTCAATTGGAACTGGGAAGATGACGGGGGGGTCTTAGGTCAGAATTTCAAAGAACCATCATCTTGGTTTTATTGGGCGAATACCAATGGGAAAGGAGAAGAATGTCTTTGA

Protein sequence

MDPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSAWASSINSNFNSEWLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL
Homology
[Close]
BLAST of Cp4.1LG17g00430 vs. NCBI nr
Match: XP_023514276.1 (transcription factor MYB111-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205 bits (521), Expect = 7.34e-64
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1   MDPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSAWASSINSNFNSE 60
           MDPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSAWASSINSNFNSE
Sbjct: 204 MDPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSAWASSINSNFNSE 263

Query: 61  WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 97
           WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL
Sbjct: 264 WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 300

[Close]
BLAST of Cp4.1LG17g00430 vs. NCBI nr
Match: XP_022930499.1 (transcription factor MYB111-like [Cucurbita moschata])

HSP 1 Score: 198 bits (503), Expect = 4.00e-61
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 2   DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS-AWASSINSNFNSE 61
           DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS AWASSINSNFNSE
Sbjct: 205 DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSSAWASSINSNFNSE 264

Query: 62  WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 97
           WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL
Sbjct: 265 WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 301

[Close]
BLAST of Cp4.1LG17g00430 vs. NCBI nr
Match: KAG7026340.1 (Transcription factor MYB-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196 bits (499), Expect = 1.61e-60
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 2   DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS-AWASSINSNFNSE 61
           DPKVEEKETWELGSNELIDETIKGIDEREN VWSSNIESEELYYSS AWASSINSNFNSE
Sbjct: 205 DPKVEEKETWELGSNELIDETIKGIDERENGVWSSNIESEELYYSSSAWASSINSNFNSE 264

Query: 62  WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 97
           WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL
Sbjct: 265 WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 301

[Close]
BLAST of Cp4.1LG17g00430 vs. NCBI nr
Match: KAG6594000.1 (Transcription factor MYB111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195 bits (495), Expect = 6.48e-60
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 2   DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS-AWASSINSNFNSE 61
           DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS AWASSINSNFNSE
Sbjct: 205 DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSSAWASSINSNFNSE 264

Query: 62  WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 97
           WLNWNWED GGVLGQNFKEPSSWFYWANTNGKGEECL
Sbjct: 265 WLNWNWEDAGGVLGQNFKEPSSWFYWANTNGKGEECL 301

[Close]
BLAST of Cp4.1LG17g00430 vs. NCBI nr
Match: XP_023000050.1 (transcription factor MYB111-like [Cucurbita maxima])

HSP 1 Score: 194 bits (492), Expect = 1.84e-59
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 2   DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS-AWASSINSNFNSE 61
           DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS AWASSINSNFNSE
Sbjct: 205 DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSSAWASSINSNFNSE 264

Query: 62  WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 97
           WLNWNWEDDGGVLGQNFKEPSSW +WANTNGKGEECL
Sbjct: 265 WLNWNWEDDGGVLGQNFKEPSSWVFWANTNGKGEECL 301

[Close]
BLAST of Cp4.1LG17g00430 vs. ExPASy TrEMBL
Match: A0A6J1ERL0 (transcription factor MYB111-like OS=Cucurbita moschata OX=3662 GN=LOC111436936 PE=4 SV=1)

HSP 1 Score: 198 bits (503), Expect = 1.94e-61
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 2   DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS-AWASSINSNFNSE 61
           DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS AWASSINSNFNSE
Sbjct: 205 DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSSAWASSINSNFNSE 264

Query: 62  WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 97
           WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL
Sbjct: 265 WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 301

[Close]
BLAST of Cp4.1LG17g00430 vs. ExPASy TrEMBL
Match: A0A6J1KH99 (transcription factor MYB111-like OS=Cucurbita maxima OX=3661 GN=LOC111494357 PE=4 SV=1)

HSP 1 Score: 194 bits (492), Expect = 8.91e-60
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 2   DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS-AWASSINSNFNSE 61
           DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSS AWASSINSNFNSE
Sbjct: 205 DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSSAWASSINSNFNSE 264

Query: 62  WLNWNWEDDGGVLGQNFKEPSSWFYWANTNGKGEECL 97
           WLNWNWEDDGGVLGQNFKEPSSW +WANTNGKGEECL
Sbjct: 265 WLNWNWEDDGGVLGQNFKEPSSWVFWANTNGKGEECL 301

[Close]
BLAST of Cp4.1LG17g00430 vs. ExPASy TrEMBL
Match: A0A1S3C7U9 (myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103497807 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.60e-15
Identity = 53/100 (53.00%), Postives = 66/100 (66.00%), Query Frame = 0 

Query: 2   DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSAWASSINSNFNSEW 61
           DPK+EE E WE  +++         ++ EN V S+ IES E +YSS W SS   NFN+EW
Sbjct: 208 DPKIEE-EHWEFTTDDG--------EKVENEVISTIIESGEWFYSS-WPSS---NFNNEW 267

Query: 62  LNWNWEDDGGVLGQNFKEPSSWFYWAN------TNGKGEE 95
           +NW+WE DG VLGQN +EPSSWF WAN      TNG+GEE
Sbjct: 268 MNWDWESDG-VLGQNVQEPSSWF-WANNNNDNNTNGEGEE 292

[Close]
BLAST of Cp4.1LG17g00430 vs. ExPASy TrEMBL
Match: A0A6J1L4U4 (transcription repressor MYB6-like OS=Cucurbita maxima OX=3661 GN=LOC111499144 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.46e-06
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 2   DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSAWASSINSNFNS-E 61
           DPK+EE E W+LGS E   +  K    R N    + +ES E  YS AW SS+NS+FN+ E
Sbjct: 210 DPKLEE-ENWDLGSCEFTADAEK----RGNGF--TIVESVEWCYS-AWPSSMNSSFNNNE 269

Query: 62  WLNWNWEDDGGVLG 74
           WLNW WEDDG VLG
Sbjct: 270 WLNWEWEDDG-VLG 274

[Close]
BLAST of Cp4.1LG17g00430 vs. ExPASy TrEMBL
Match: A0A6J1H7Q3 (transcription factor MYB8-like OS=Cucurbita moschata OX=3662 GN=LOC111460330 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.50e-06
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 2   DPKVEEKETWELGSNELIDETIKGIDERENSVWSSNIESEELYYSSAWASSINSNFNS-E 61
           DPK+EE E W+LGS E   +  K    R N    + +ES E  YS AW SS+NS+FN+ E
Sbjct: 214 DPKLEE-ENWDLGSCEFTADAEK----RGNGF--TIVESVEWCYS-AWPSSMNSSFNNNE 273

Query: 62  WLNWNWEDDGGVLG 74
           WLNW WEDDG VLG
Sbjct: 274 WLNWEWEDDG-VLG 278

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g00430 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g00430 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023514276.17.34e-64100.00transcription factor MYB111-like [Cucurbita pepo subsp. pepo][more]
XP_022930499.14.00e-6198.97transcription factor MYB111-like [Cucurbita moschata][more]
KAG7026340.11.61e-6097.94Transcription factor MYB-like protein [Cucurbita argyrosperma subsp. argyrosperm... [more]
KAG6594000.16.48e-6097.94Transcription factor MYB111, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023000050.11.84e-5996.91transcription factor MYB111-like [Cucurbita maxima][more]
BLAST of Cp4.1LG17g00430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ERL01.94e-6198.97transcription factor MYB111-like OS=Cucurbita moschata OX=3662 GN=LOC111436936 P... [more]
A0A6J1KH998.91e-6096.91transcription factor MYB111-like OS=Cucurbita maxima OX=3661 GN=LOC111494357 PE=... [more]
A0A1S3C7U92.60e-1553.00myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103497807 PE=4 SV=1[more]
A0A6J1L4U42.46e-0654.05transcription repressor MYB6-like OS=Cucurbita maxima OX=3661 GN=LOC111499144 PE... [more]
A0A6J1H7Q32.50e-0654.05transcription factor MYB8-like OS=Cucurbita moschata OX=3662 GN=LOC111460330 PE=... [more]
BLAST of Cp4.1LG17g00430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g00430.1Cp4.1LG17g00430.1mRNA