Cp4.1LG17g00350 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g00350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger CCHC domain-containing protein 10-like
Location	Cp4.1LG17: 388969 .. 389745 (+)
RNA-Seq Expression	Cp4.1LG17g00350
Synteny	Cp4.1LG17g00350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCTGAAAGGATTAAGGCCGCTGCTCTTAGTGCAGCAAAGGGGCTCAGTCGTGCTCAGGCTGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAAGCAGTCAGATTGGGTGAAAGAAAGGACCTTAAGGGCTCTATGTCTTGCGCTGGTGGAGGTGCTGCTGCACAGTGCCAGAAATGTTATCAGGTGGGGCATTGGACGTATGAATGCAAAAACGAACGAGTTTACATATCTCGGCCATCTCGAACTCAACAACTTAAGAATCCCAAGTTGAGGATGAAGATGGCAGCCTCTTATGATCTGGACAACCCGGATTCTGATATGAAGAACGAGAAGAAGAAGACTGAGAAGCATTCGAAGAAGAAAAGCAAAAGAAAGCATGGGCGGTCCAGTAGCGATAGTGAGGCCTCTGCTTTAGAGACTGAAAGTGGGTCATCATCAGTTTCTGGAAGCAGTTCAGATTACAGTTCTTCATCTGAATCTGAATCAGAGAGGAGTCGGAGAAGGAGAAAGAAGCAGAAAAGGGAGAGAAGAAAGAGGAGGTACAGTTCATCTTCTGAATCTTCTGATTCTGACTCCGGTTCTGAATCAGAATCTGATTCCGATGATGAACGTAGTCGGAGGAAGAGCCGAAGGCACAGCAGAAGGCGCTAG

mRNA sequence

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCTGAAAGGATTAAGGCCGCTGCTCTTAGTGCAGCAAAGGGGCTCAGTCGTGCTCAGGCTGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAAGCAGTCAGATTGGGTGAAAGAAAGGACCTTAAGGGCTCTATGTCTTGCGCTGGTGGAGGTGCTGCTGCACAGTGCCAGAAATGTTATCAGGTGGGGCATTGGACGTATGAATGCAAAAACGAACGAGTTTACATATCTCGGCCATCTCGAACTCAACAACTTAAGAATCCCAAGTTGAGGATGAAGATGGCAGCCTCTTATGATCTGGACAACCCGGATTCTGATATGAAGAACGAGAAGAAGAAGACTGAGAAGCATTCGAAGAAGAAAAGCAAAAGAAAGCATGGGCGGTCCAGTAGCGATAGTGAGGCCTCTGCTTTAGAGACTGAAAGTGGGTCATCATCAGTTTCTGGAAGCAGTTCAGATTACAGTTCTTCATCTGAATCTGAATCAGAGAGGAGTCGGAGAAGGAGAAAGAAGCAGAAAAGGGAGAGAAGAAAGAGGAGGTACAGTTCATCTTCTGAATCTTCTGATTCTGACTCCGGTTCTGAATCAGAATCTGATTCCGATGATGAACGTAGTCGGAGGAAGAGCCGAAGGCACAGCAGAAGGCGCTAG

Coding sequence (CDS)

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCTGAAAGGATTAAGGCCGCTGCTCTTAGTGCAGCAAAGGGGCTCAGTCGTGCTCAGGCTGAACGAGCAGCTGCGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAAGCAGTCAGATTGGGTGAAAGAAAGGACCTTAAGGGCTCTATGTCTTGCGCTGGTGGAGGTGCTGCTGCACAGTGCCAGAAATGTTATCAGGTGGGGCATTGGACGTATGAATGCAAAAACGAACGAGTTTACATATCTCGGCCATCTCGAACTCAACAACTTAAGAATCCCAAGTTGAGGATGAAGATGGCAGCCTCTTATGATCTGGACAACCCGGATTCTGATATGAAGAACGAGAAGAAGAAGACTGAGAAGCATTCGAAGAAGAAAAGCAAAAGAAAGCATGGGCGGTCCAGTAGCGATAGTGAGGCCTCTGCTTTAGAGACTGAAAGTGGGTCATCATCAGTTTCTGGAAGCAGTTCAGATTACAGTTCTTCATCTGAATCTGAATCAGAGAGGAGTCGGAGAAGGAGAAAGAAGCAGAAAAGGGAGAGAAGAAAGAGGAGGTACAGTTCATCTTCTGAATCTTCTGATTCTGACTCCGGTTCTGAATCAGAATCTGATTCCGATGATGAACGTAGTCGGAGGAAGAGCCGAAGGCACAGCAGAAGGCGCTAG

Protein sequence

MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKHGRSSSDSEASALETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESESDSDDERSRRKSRRHSRRR

Homology

[Close]

BLAST of Cp4.1LG17g00350 vs. ExPASy Swiss-Prot
Match: Q5EB97 (Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Zcchc10 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06
Identity = 64/165 (38.79%), Postives = 83/165 (50.30%), Query Frame = 0


Query: 97  QCQKCYQVGHWTYECKNERVYISRPSRTQQLKNP-KLRMKMAASYDLDNPDSDMKNEKKK 156
           +CQKC + GHWTYECK +R Y+ RPSRT +LK   K +        +   +++ K +KK+
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELKKALKEKENRLLQQSMGETNTERKTKKKR 81

Query: 157 TEKH--SKKKSKRKHGRSSSDSEASALETE-----SGSSSVSGSSSDYSSSSESESERSR 216
             K   S   S      SSS+SE SA  +       GS S S SSS YSSSS S S  S 
Sbjct: 82  RPKSVTSTSSSDSSASESSSESETSASSSSEDSDADGSLSSSSSSSAYSSSSSSSSSSSS 141

Query: 217 RRRKKQKRERRKRRYSSSSESSDSDSGSESESDSDDERSRRKSRR 254
                          S S  SS S S S SES SDDE  +++ ++
Sbjct: 142 SS-------------SDSDSSSSSSSSSSSESSSDDEPPKKRKKK 173

[Close]

BLAST of Cp4.1LG17g00350 vs. ExPASy Swiss-Prot
Match: Q9CX48 (Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc10 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.6e-05
Identity = 66/160 (41.25%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 97  QCQKCYQVGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKT 156
           +CQKC + GHWTYECK +R Y+ RPSRT +LK   L+ K      L        N +KK 
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELKK-ALKEK---ENRLLLQSIGETNIEKKI 81

Query: 157 EKHSKKKSKRKHGRSSSDSEASALETE---SGSSSVSGSSSDYSSSSESESERSRRRRKK 216
           +K  + KS      SSSDS AS   +E   S SSS   S SD S SS S S  S      
Sbjct: 82  KKKKRSKSVTSSSTSSSDSSASESSSESETSASSSSEDSDSDESLSSSSSSSSSSACSSS 141

Query: 217 QKRERRKRRYSSSSESSDSDSGSESESDSDDERSRRKSRR 254
                      S S SS S S S SES SDDE  ++K ++
Sbjct: 142 SSSSSSSSSSDSDSSSSSSSSSSSSESSSDDEPQKKKKKK 177

[Close]

BLAST of Cp4.1LG17g00350 vs. ExPASy Swiss-Prot
Match: Q8TBK6 (Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.8e-04
Identity = 58/163 (35.58%), Postives = 78/163 (47.85%), Query Frame = 0


Query: 97  QCQKCYQVGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKT 156
           +CQKC + GHWTYEC  +R Y+ RPSRT +LK      +          +++++ + KK 
Sbjct: 44  RCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKAKKK 103

Query: 157 EKHSKKKSKRKHGRSSSDSEASALETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKR 216
              S   S      SS+   +S  E  S SSS   S +D SSSS S S  S         
Sbjct: 104 RSKSVTSSSSSSSDSSASDSSSESEETSTSSSSEDSDTDESSSSSSSSASSTT------- 163

Query: 217 ERRKRRYSSSSESSDSDSGSES------ESDSDDERSRRKSRR 254
                  SSSS  SDSDS S S      +S SDDE  ++K ++
Sbjct: 164 -------SSSSSDSDSDSSSSSSSSTSTDSSSDDEPPKKKKKK 192

[Close]

BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match: XP_023514078.1 (zinc finger CCHC domain-containing protein 10-like [Cucurbita pepo subsp. pepo] >XP_023514079.1 zinc finger CCHC domain-containing protein 10-like [Cucurbita pepo subsp. pepo] >XP_023514080.1 zinc finger CCHC domain-containing protein 10-like [Cucurbita pepo subsp. pepo] >XP_023514081.1 zinc finger CCHC domain-containing protein 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427 bits (1097), Expect = 3.27e-149
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKHGRSSSDSEASAL 180
           PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKHGRSSSDSEASAL
Sbjct: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKHGRSSSDSEASAL 180

Query: 181 ETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESES 240
           ETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESES
Sbjct: 181 ETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESES 240

Query: 241 DSDDERSRRKSRRHSRRR 258
           DSDDERSRRKSRRHSRRR
Sbjct: 241 DSDDERSRRKSRRHSRRR 258

[Close]

BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match: KAG6594009.1 (Zinc finger CCHC domain-containing protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 414 bits (1063), Expect = 5.12e-144
Identity = 255/259 (98.46%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLKGSMS AGGGAAAQCQKCYQVGHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSSAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKK-TEKHSKKKSKRKHGRSSSDSEASA 180
           PSRTQQLKNPKLRMKMAASYDLDNPDSD K EKKK TEKHSKKKSKRKHGRSSSDSEASA
Sbjct: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDTKEEKKKKTEKHSKKKSKRKHGRSSSDSEASA 180

Query: 181 LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESE 240
           LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESE
Sbjct: 181 LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESE 240

Query: 241 SDSDDERSRRKSRRHSRRR 258
           SDSDDERSRRKSRRHSRRR
Sbjct: 241 SDSDDERSRRKSRRHSRRR 259

[Close]

BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match: XP_022930426.1 (zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata] >XP_022930427.1 zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata] >XP_022930428.1 zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata] >XP_022930429.1 zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata])

HSP 1 Score: 411 bits (1057), Expect = 4.51e-143
Identity = 254/261 (97.32%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLKGSMS AGGGAAAQCQKCYQVGHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSSAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNE---KKKTEKHSKKKSKRKHGRSSSDSEA 180
           PSRTQQLKNPKLRMKMAASYDLDNPDSDM+ E   KKKTEKHSKKKSKRKHGRSSSDSEA
Sbjct: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMEEEEEKKKKTEKHSKKKSKRKHGRSSSDSEA 180

Query: 181 SALETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSE 240
           SALETESGSSSVSGSSSDYSSSSESESERSRRRRKK KRERRKRRYSSSSESSDSDSGSE
Sbjct: 181 SALETESGSSSVSGSSSDYSSSSESESERSRRRRKKPKRERRKRRYSSSSESSDSDSGSE 240

Query: 241 SESDSDDERSRRKSRRHSRRR 258
           SESDSDDERSRRKSRRHSRRR
Sbjct: 241 SESDSDDERSRRKSRRHSRRR 261

[Close]

BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match: KAG7026351.1 (Zinc finger CCHC domain-containing protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 414 bits (1063), Expect = 1.07e-142
Identity = 255/259 (98.46%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 87  MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 146

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLKGSMS AGGGAAAQCQKCYQVGHWTYECKNERVYISR
Sbjct: 147 EAKRQMYLMSTEKAVRLGERKDLKGSMSSAGGGAAAQCQKCYQVGHWTYECKNERVYISR 206

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKK-TEKHSKKKSKRKHGRSSSDSEASA 180
           PSRTQQLKNPKLRMKMAASYDLDNPDSD K EKKK TEKHSKKKSKRKHGRSSSDSEASA
Sbjct: 207 PSRTQQLKNPKLRMKMAASYDLDNPDSDAKEEKKKKTEKHSKKKSKRKHGRSSSDSEASA 266

Query: 181 LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESE 240
           LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESE
Sbjct: 267 LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESE 326

Query: 241 SDSDDERSRRKSRRHSRRR 258
           SDSDDERSRRKSRRHSRRR
Sbjct: 327 SDSDDERSRRKSRRHSRRR 345

[Close]

BLAST of Cp4.1LG17g00350 vs. NCBI nr
Match: XP_023000099.1 (zinc finger CCHC domain-containing protein 10-like [Cucurbita maxima] >XP_023000100.1 zinc finger CCHC domain-containing protein 10-like [Cucurbita maxima] >XP_023000101.1 zinc finger CCHC domain-containing protein 10-like [Cucurbita maxima] >XP_023000102.1 zinc finger CCHC domain-containing protein 10-like [Cucurbita maxima])

HSP 1 Score: 387 bits (995), Expect = 8.72e-134
Identity = 243/259 (93.82%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLKGSMS AGGGAAAQCQKCYQVGHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSSAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEK-KKTEKHSKKKSKRKHGRSSSDSEASA 180
           PSRTQQLKNPKLRMKMAASYDLDNPDSD+K +K KKTEKHSKKKS RKHGRSSSDSEASA
Sbjct: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDVKKKKEKKTEKHSKKKSTRKHGRSSSDSEASA 180

Query: 181 LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESE 240
           LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQK ERRKRRYSSSSESSDSDS     
Sbjct: 181 LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKMERRKRRYSSSSESSDSDSN---- 240

Query: 241 SDSDDERSRRKSRRHSRRR 258
               DERSRRKSRRHSRRR
Sbjct: 241 ----DERSRRKSRRHSRRR 251

[Close]

BLAST of Cp4.1LG17g00350 vs. ExPASy TrEMBL
Match: A0A6J1ERD8 (zinc finger CCHC domain-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111436876 PE=4 SV=1)

HSP 1 Score: 411 bits (1057), Expect = 2.18e-143
Identity = 254/261 (97.32%), Postives = 255/261 (97.70%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLKGSMS AGGGAAAQCQKCYQVGHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSSAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNE---KKKTEKHSKKKSKRKHGRSSSDSEA 180
           PSRTQQLKNPKLRMKMAASYDLDNPDSDM+ E   KKKTEKHSKKKSKRKHGRSSSDSEA
Sbjct: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMEEEEEKKKKTEKHSKKKSKRKHGRSSSDSEA 180

Query: 181 SALETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSE 240
           SALETESGSSSVSGSSSDYSSSSESESERSRRRRKK KRERRKRRYSSSSESSDSDSGSE
Sbjct: 181 SALETESGSSSVSGSSSDYSSSSESESERSRRRRKKPKRERRKRRYSSSSESSDSDSGSE 240

Query: 241 SESDSDDERSRRKSRRHSRRR 258
           SESDSDDERSRRKSRRHSRRR
Sbjct: 241 SESDSDDERSRRKSRRHSRRR 261

[Close]

BLAST of Cp4.1LG17g00350 vs. ExPASy TrEMBL
Match: A0A6J1KCM5 (zinc finger CCHC domain-containing protein 10-like OS=Cucurbita maxima OX=3661 GN=LOC111494397 PE=4 SV=1)

HSP 1 Score: 387 bits (995), Expect = 4.22e-134
Identity = 243/259 (93.82%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLKGSMS AGGGAAAQCQKCYQVGHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSSAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEK-KKTEKHSKKKSKRKHGRSSSDSEASA 180
           PSRTQQLKNPKLRMKMAASYDLDNPDSD+K +K KKTEKHSKKKS RKHGRSSSDSEASA
Sbjct: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDVKKKKEKKTEKHSKKKSTRKHGRSSSDSEASA 180

Query: 181 LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESSDSDSGSESE 240
           LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQK ERRKRRYSSSSESSDSDS     
Sbjct: 181 LETESGSSSVSGSSSDYSSSSESESERSRRRRKKQKMERRKRRYSSSSESSDSDSN---- 240

Query: 241 SDSDDERSRRKSRRHSRRR 258
               DERSRRKSRRHSRRR
Sbjct: 241 ----DERSRRKSRRHSRRR 251

[Close]

BLAST of Cp4.1LG17g00350 vs. ExPASy TrEMBL
Match: A0A6J1CAJ2 (zinc finger CCHC domain-containing protein 10 OS=Momordica charantia OX=3673 GN=LOC111009881 PE=4 SV=1)

HSP 1 Score: 358 bits (919), Expect = 2.55e-122
Identity = 237/269 (88.10%), Postives = 244/269 (90.71%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKDLK SMS AGG AAAQCQKCYQVGHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSAGG-AAAQCQKCYQVGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKLRMKM+ SY+LDNPDS    EKKKTEKHSKK SKRKH    +S SDSEA
Sbjct: 121 PSRTQQLKNPKLRMKMSESYELDNPDSGK--EKKKTEKHSKK-SKRKHRSNAKSGSDSEA 180

Query: 181 SALETESGSSSVSGS-------SSDYSSSSESESER-SRRRRKKQKRERRKRRYSSSSES 240
           S  ET+SGSSSV+GS       SSDYSSSSESESER SRRRRKKQK+ RRKRRYSSSSES
Sbjct: 181 SVFETDSGSSSVTGSDDSSEGSSSDYSSSSESESERRSRRRRKKQKKGRRKRRYSSSSES 240

Query: 241 SDSDSGSESESDSDDERSRRKSRRHSRRR 258
           SDSDSGSESESDSDDERS+RKSRRHSRRR
Sbjct: 241 SDSDSGSESESDSDDERSKRKSRRHSRRR 265

[Close]

BLAST of Cp4.1LG17g00350 vs. ExPASy TrEMBL
Match: A0A0A0LJ33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1)

HSP 1 Score: 350 bits (898), Expect = 3.86e-119
Identity = 229/268 (85.45%), Postives = 241/268 (89.93%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKD+KGSMS AGG AAAQCQKCYQ+GHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGG-AAAQCQKCYQMGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKLRMKM  S +LDNPD     E+KK +KHSKKKSKRKH    +S+SDSEA
Sbjct: 121 PSRTQQLKNPKLRMKMEVSLELDNPDP---GEEKKPKKHSKKKSKRKHRSNAKSNSDSEA 180

Query: 181 SALETESGSSSVSGS-------SSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESS 240
           S  ET+SGSSSV+ S       SSDYSSSSESESERSRRRRKKQKR RRKRRYSSSS+SS
Sbjct: 181 SVFETDSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSDDERSRRKSRRHSRRR 258
           DSDS SESESDSD+ERSRRKSRRHSR+R
Sbjct: 241 DSDSRSESESDSDNERSRRKSRRHSRKR 264

[Close]

BLAST of Cp4.1LG17g00350 vs. ExPASy TrEMBL
Match: A0A1S3CDQ2 (zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC103499707 PE=4 SV=1)

HSP 1 Score: 346 bits (888), Expect = 1.28e-117
Identity = 227/268 (84.70%), Postives = 238/268 (88.81%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAGGGAAAQCQKCYQVGHWTYECKNERVYISR 120
           EAKRQMYLMSTEKAVRLGERKD+KGSMS AGG AAAQCQKCYQ+GHWTYECKNERVYISR
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGG-AAAQCQKCYQMGHWTYECKNERVYISR 120

Query: 121 PSRTQQLKNPKLRMKMAASYDLDNPDSDMKNEKKKTEKHSKKKSKRKH---GRSSSDSEA 180
           PSRTQQLKNPKLRMKM  S +LDNPD     E++K +KHSK KSKRKH    +S SDSEA
Sbjct: 121 PSRTQQLKNPKLRMKMEVSLELDNPDP---GEEEKPKKHSKNKSKRKHRSNAKSDSDSEA 180

Query: 181 SALETESGSSSVSGS-------SSDYSSSSESESERSRRRRKKQKRERRKRRYSSSSESS 240
           S  ET+SGSSSV+ S       SSDYSSSSESE ERSRRRRKKQKR RRKRRYSSSS+SS
Sbjct: 181 SVFETDSGSSSVTESDDSSEESSSDYSSSSESECERSRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSGSESESDSDDERSRRKSRRHSRRR 258
           DSDS SESESDSD+ERSRRKSRRHSRRR
Sbjct: 241 DSDSRSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of Cp4.1LG17g00350 vs. TAIR 10
Match: AT5G49400.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-67
Identity = 185/277 (66.79%), Postives = 210/277 (75.81%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60
           MS+ K+EKSQ AA+RIKAA L+AAKGLSR QAERAAAAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDLKGSMSCAG--GGAAAQCQKCYQVGHWTYECKNERVYI 120
           E KRQMYLMSTEKAVRLGERKD   S S  G    AA+QCQKC+Q GHWTYECKNERVYI
Sbjct: 61  ELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYI 120

Query: 121 SRPSRTQQLKNPKLRMKMAASYDLDNPDSDMKNE-------KKKTEKHSKKKSKRKH--- 180
           SRPSRTQQLKNPKLR K +   DLD  D D + E       K + EK S KKSKRKH   
Sbjct: 121 SRPSRTQQLKNPKLRTKPSVD-DLDGSDDDDEEERPDATNGKAEVEKRS-KKSKRKHRSK 180

Query: 181 GRSSSDSEASALETESGSSSVSGSSSDYSSSSESESERSRRR-------RKKQKRERRKR 240
             S SDSEAS  ET+S  SS   SSS+YSSSS+SE ER RRR       ++KQ++ERR+R
Sbjct: 181 SDSESDSEASVFETDSDGSS-GESSSEYSSSSDSEDERRRRRKAKKSKKKQKQRKERRRR 240

Query: 241 RYSSSSESSDSDSGSESESDSDDERSRRKSRRHSRRR 259
             SSSSESS+S+S S+S+SD D  R ++KS+RHS +R
Sbjct: 241 YSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKR 274

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g00350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EB97	1.8e-06	38.79	Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Z...	[more]
Q9CX48	7.6e-05	41.25	Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc1...	[more]
Q8TBK6	3.8e-04	35.58	Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10...	[more]

BLAST of Cp4.1LG17g00350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514078.1	3.27e-149	100.00	zinc finger CCHC domain-containing protein 10-like [Cucurbita pepo subsp. pepo] ...	[more]
KAG6594009.1	5.12e-144	98.46	Zinc finger CCHC domain-containing protein 10, partial [Cucurbita argyrosperma s...	[more]
XP_022930426.1	4.51e-143	97.32	zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata] >XP_0229...	[more]
KAG7026351.1	1.07e-142	98.46	Zinc finger CCHC domain-containing protein 10, partial [Cucurbita argyrosperma s...	[more]
XP_023000099.1	8.72e-134	93.82	zinc finger CCHC domain-containing protein 10-like [Cucurbita maxima] >XP_023000...	[more]

BLAST of Cp4.1LG17g00350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERD8	2.18e-143	97.32	zinc finger CCHC domain-containing protein 10-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KCM5	4.22e-134	93.82	zinc finger CCHC domain-containing protein 10-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1CAJ2	2.55e-122	88.10	zinc finger CCHC domain-containing protein 10 OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0LJ33	3.86e-119	85.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1	[more]
A0A1S3CDQ2	1.28e-117	84.70	zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Cp4.1LG17g00350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49400.1	1.1e-67	66.79	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13917	zf-CCHC_3	coord: 93..130 e-value: 5.9E-20 score: 70.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..200
None	No IPR available	PANTHER	PTHR13491:SF2	ZINC FINGER, CCHC-TYPE-RELATED	coord: 14..182
IPR039715	Zinc finger CCHC domain-containing protein 10	PANTHER	PTHR13491	ZCCHC10 PROTEIN	coord: 14..182
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 90..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g00350.1	Cp4.1LG17g00350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding