Cp4.1LG17g00320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g00320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG17: 372824 .. 374467 (+)
RNA-Seq Expression	Cp4.1LG17g00320
Synteny	Cp4.1LG17g00320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGTTCAGCTGCCCATAACACTAAAATAGGTCAATATTTTCTTTGCGTGCGATTATCCGAGCGGAGGCGAAGGAAACCCTAGGATTTGCAGCCACCGCAGAGTTCAAGGTTTGTTCTACTCCTCTCTCTCTCTACTGATTTAATTTACTCCGAAGATCGGCGTAGATTCAGTTTCTTATTTCACTTTCTTTTTTGTGCTTCTTTGTTCTGTTGTCTTTAGAGATGGCCAAGTCGAAGAATCACACGGCACACAATCAGTCCCGCAAAGCCCATAGGAATGGCATCAAGAAACCAAGGAAGCACCGCCACACCTCCACCAAAGGAGTACGAAATACATGAACAGAATCAATTTTCGATTATTTTGTATAAAATATTATTTTCAGAATCATTTTGATTTTTCTGATTTTGTTTCGTGGATCTGCTTGCAGATGGACCCGAAGTTTCTCAGGAACCAGAGGTACGCGAAGAAACACAACAACAAGAGTGGCGAAACAGCTTCTGAGGAAGAGTAAAGTAGGACGCCAAGATGCGGCAAGTTCAGGGTTTTTATGATATAAGTTTGATTTTCTATTGAACCTCTTGTTTTATCTGTTGTTTTTGTTTAGTAGCAGTCTTGTAATTTTGACTTTGTTGTAGCGAGCTCCATTTTGATGAGGCTTCTACGGCCTGGTTACGACAATACACTATCAGTTTTGCATTTTTTTTAAGGTCTTAACTATTGCTTACATCTTCATACACATCATTTTTTTTACTTTCATGTTCTCTTCACTCATATTAGCTAAGCGATTATCTTCTCTCTTTGCTCCAATGGTTTTTATTCTCTTCACTCTTATTTAGCTTGGATTTGAATACGGGACGAACTTTTAACTCGGCTTTCATTGTCTTATGATTCCTTGCTATTATTAGAGGTGTCTTTTGTTTGAGATATTTTCATAGAGATTTTTGGACAGAACGTTCTTGGAACTCCCTTTGTAATAGGCGTTCATGAATGTTCTTGTTTTCGGACGTGTGCCAATGGGACATTCTTTCCTAGTTCATTTGGCTCTGTAAGGTAGCTTCGTATTCCTTGTTCTTCTTTTCGTGTGTTTCATCACGTAGTTATATGAATATTAGGCTTCAAATTTTAAGATTTTTATGCGTCTTTAACCGCAATGAGTCCTATAATGGTCATGAGGCAAGTGATGAGAGATTACGAGCTTTTTCTTCCTATTAAGAGAATCTTTGTTATGTTATAGGAGGGAAACCTAGTTAGTTGTCTTACTTTTCTCTCAACATTTGGTAGTTTCTTCCTGATTGCTCCATCTTCGAAACTCGAGCTCCAAACGATTCCTCGAAAATGAAAGAAACGAGCAACCAAAGCTTCTTTCCCTACCTTCTTGACAGCGTGAAGTGCTGCTCCATGGCCAACAACACCAGCTCTAATAATGAGTGAATTTGGATAGACTTCGGAGCAGCAGAGACCTTCCTCGTCGATCTCGAGCCAGCCAATATGTGAACTCTATGGGATTCAATGCGTTTGAGCGACGAAAACTCTTACATTGTTCAAGAGATAATATTGTGCCCTAAAATCAAGTAAAATTTGTCTACTATGATTGTATTTATATTTTAACGTTATAAGTTGACCTAGAGCACACATGCTTAC

mRNA sequence

CCAAGTTCAGCTGCCCATAACACTAAAATAGGTCAATATTTTCTTTGCGTGCGATTATCCGAGCGGAGGCGAAGGAAACCCTAGGATTTGCAGCCACCGCAGAGTTCAAGAGATGGCCAAGTCGAAGAATCACACGGCACACAATCAGTCCCGCAAAGCCCATAGGAATGGCATCAAGAAACCAAGGAAGCACCGCCACACCTCCACCAAAGGAATGGACCCGAAGTTTCTCAGGAACCAGAGGTACGCGAAGAAACACAACAACAAGAGTGGCGAAACAGCTTCTGAGGAAGAGTAAAGTAGGACGCCAAGATGCGGCAAGTTCAGGTAGCAGTCTTTTTCTTCCTGATTGCTCCATCTTCGAAACTCGAGCTCCAAACGATTCCTCGAAAATGAAAGAAACGAGCAACCAAAGCTTCTTTCCCTACCTTCTTGACAGCGTGAAGTGCTGCTCCATGGCCAACAACACCAGCTCTAATAATGAGTGAATTTGGATAGACTTCGGAGCAGCAGAGACCTTCCTCGTCGATCTCGAGCCAGCCAATATGTGAACTCTATGGGATTCAATGCGTTTGAGCGACGAAAACTCTTACATTGTTCAAGAGATAATATTGTGCCCTAAAATCAAGTAAAATTTGTCTACTATGATTGTATTTATATTTTAACGTTATAAGTTGACCTAGAGCACACATGCTTAC

Coding sequence (CDS)

ATGGCATCAAGAAACCAAGGAAGCACCGCCACACCTCCACCAAAGGAATGGACCCGAAGTTTCTCAGGAACCAGAGGTACGCGAAGAAACACAACAACAAGAGTGGCGAAACAGCTTCTGAGGAAGAGTAAAGTAGGACGCCAAGATGCGGCAAGTTCAGGTAGCAGTCTTTTTCTTCCTGATTGCTCCATCTTCGAAACTCGAGCTCCAAACGATTCCTCGAAAATGAAAGAAACGAGCAACCAAAGCTTCTTTCCCTACCTTCTTGACAGCGTGAAGTGCTGCTCCATGGCCAACAACACCAGCTCTAATAATGAGTGA

Protein sequence

MASRNQGSTATPPPKEWTRSFSGTRGTRRNTTTRVAKQLLRKSKVGRQDAASSGSSLFLPDCSIFETRAPNDSSKMKETSNQSFFPYLLDSVKCCSMANNTSSNNE

Homology

[Close]

BLAST of Cp4.1LG17g00320 vs. NCBI nr
Match: KAG6575106.1 (hypothetical protein SDJN03_25745, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.5 bits (127), Expect = 5.78e-06
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 2  ASRNQGSTATPPPKEWTRSFSGTRGTRRNTTTRVAK 37
          ASRN+GS AT PPKEW RS  GTRGTRRNTT RV K
Sbjct: 62 ASRNRGSIATLPPKEWIRSSLGTRGTRRNTTIRVVK 97

[Close]

BLAST of Cp4.1LG17g00320 vs. ExPASy TrEMBL
Match: A0A0D9X2T5 (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.73e-04
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 2   ASRNQGSTATPPPKEWTRSFSGTRGTRRNTTTRVAKQLLRKSKV 45
           ASRN  + A PPP+ WT+S SGTRGTR +TT RVA+ L  +SKV
Sbjct: 86  ASRNPSAIARPPPRGWTQSSSGTRGTRGSTTRRVAR-LRPRSKV 128

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g00320 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g00320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575106.1	5.78e-06	77.78	hypothetical protein SDJN03_25745, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG17g00320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0D9X2T5	6.73e-04	61.36	Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1	[more]

BLAST of Cp4.1LG17g00320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g00320.1	Cp4.1LG17g00320.1	mRNA