Cp4.1LG17g00170 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g00170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG17: 421820 .. 422134 (-)
RNA-Seq ExpressionCp4.1LG17g00170
SyntenyCp4.1LG17g00170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATGATGAAGAGGACCCTTCTTCTCTTTGCCGTCTTCTTGCTGCTCGTGTTTACAGATGCGACCATGCACAACGTGGTTAAGAAGAAAGATGCGCGTAAGCTAGCTCAAAGCTTTAGTGGTCAAATCCCTAAAACGGGAGTGTTCGGTGGTGTGAAATATTCTGAAGATGCTGATGTTGCTCAAGCTGACGTTGGCATGAACAACAACGAAGATGAGGACGATGAAAATCTTGGTTATAAAAACTACGGAAAGGGTTCGGATACCGAAACTCACCGTTACTTCTCAAGTGAGAAGCCATACAGACCCTAA

mRNA sequence

ATGACTATGATGAAGAGGACCCTTCTTCTCTTTGCCGTCTTCTTGCTGCTCGTGTTTACAGATGCGACCATGCACAACGTGGTTAAGAAGAAAGATGCGCGTAAGCTAGCTCAAAGCTTTAGTGGTCAAATCCCTAAAACGGGAGTGTTCGGTGGTGTGAAATATTCTGAAGATGCTGATGTTGCTCAAGCTGACGTTGGCATGAACAACAACGAAGATGAGGACGATGAAAATCTTGGTTATAAAAACTACGGAAAGGGTTCGGATACCGAAACTCACCGTTACTTCTCAAGTGAGAAGCCATACAGACCCTAA

Coding sequence (CDS)

ATGACTATGATGAAGAGGACCCTTCTTCTCTTTGCCGTCTTCTTGCTGCTCGTGTTTACAGATGCGACCATGCACAACGTGGTTAAGAAGAAAGATGCGCGTAAGCTAGCTCAAAGCTTTAGTGGTCAAATCCCTAAAACGGGAGTGTTCGGTGGTGTGAAATATTCTGAAGATGCTGATGTTGCTCAAGCTGACGTTGGCATGAACAACAACGAAGATGAGGACGATGAAAATCTTGGTTATAAAAACTACGGAAAGGGTTCGGATACCGAAACTCACCGTTACTTCTCAAGTGAGAAGCCATACAGACCCTAA

Protein sequence

MTMMKRTLLLFAVFLLLVFTDATMHNVVKKKDARKLAQSFSGQIPKTGVFGGVKYSEDADVAQADVGMNNNEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP
Homology
BLAST of Cp4.1LG17g00170 vs. NCBI nr
Match: KAG6594018.1 (hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026358.1 hypothetical protein SDJN02_12860, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200 bits (508), Expect = 1.93e-64
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MTMMKRTLLLFAVFLLLVFTDATMHNVVKKKDARKLAQSFSGQIPKTGVFGGVKYSEDAD 60
           MTMMKRTLLLFAVFLLLVFTDATMH+V+KKKDARKLAQSFSGQIPKTGVFGGVKYSEDAD
Sbjct: 1   MTMMKRTLLLFAVFLLLVFTDATMHSVIKKKDARKLAQSFSGQIPKTGVFGGVKYSEDAD 60

Query: 61  VAQADVGMNNNEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           VAQADVGMNNNEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP
Sbjct: 61  VAQADVGMNNNEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104

BLAST of Cp4.1LG17g00170 vs. NCBI nr
Match: KAG6575119.1 (hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112 bits (281), Expect = 9.07e-30
Identity = 67/110 (60.91%), Postives = 77/110 (70.00%), Query Frame = 0

Query: 3   MMKRTLLLFAVFLLLVFTDATMHNVVKKKDARKLAQSFSGQI-PKTGVFGGVKYS--EDA 62
           MMK+ L+L  V LLLV  DA MH VV+KK ARKLA+S  GQ  P+T VF GV     ED 
Sbjct: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60

Query: 63  DVAQA-----DVGMNNNEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           +V        ++  NNN D+DDENLGYKNYGKGSDTETHRYFSS+KPY P
Sbjct: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110

BLAST of Cp4.1LG17g00170 vs. NCBI nr
Match: KAG7013689.1 (hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112 bits (281), Expect = 1.62e-29
Identity = 67/110 (60.91%), Postives = 77/110 (70.00%), Query Frame = 0

Query: 3   MMKRTLLLFAVFLLLVFTDATMHNVVKKKDARKLAQSFSGQI-PKTGVFGGVKYS--EDA 62
           MMK+ L+L  V LLLV  DA MH VV+KK ARKLA+S  GQ  P+T VF GV     ED 
Sbjct: 21  MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 80

Query: 63  DVAQA-----DVGMNNNEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           +V        ++  NNN D+DDENLGYKNYGKGSDTETHRYFSS+KPY P
Sbjct: 81  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 130

BLAST of Cp4.1LG17g00170 vs. NCBI nr
Match: TYK02960.1 (uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 5.07e-29
Identity = 72/110 (65.45%), Postives = 76/110 (69.09%), Query Frame = 0

Query: 3   MMKRTLLLFAVFLLLVFTDATMHNVVKKKDARKLAQ-SFSGQIPKTGVFGGVKYSE--DA 62
           MMKR LLLFAV LLL+  DA M NVV+KK ARKLAQ S   +IPK  VF      E    
Sbjct: 1   MMKRVLLLFAVLLLLLMADAAMSNVVEKKGARKLAQGSGDRRIPKAEVFNDANEPELKKT 60

Query: 63  DVAQADVGMNN-----NEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           DVA  DV  NN     NED DD NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  DVAPDDVVANNIDNDDNED-DDVNLGYKNYGKGSDTETHRYFSSDKPYRP 109

BLAST of Cp4.1LG17g00170 vs. NCBI nr
Match: XP_004150985.1 (uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical protein Csa_021763 [Cucumis sativus])

HSP 1 Score: 110 bits (275), Expect = 6.99e-29
Identity = 69/111 (62.16%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 1   MTMMKRTLLLFAVFLLLVFTDATMHNVVKKKDARKLAQSFSGQ-IPKTGVFGGVKYS--E 60
           M MMKR LLLFA  LLL+  DA    +V+KK ARKLAQ FS +  PK GVF     S  E
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLE 60

Query: 61  DADVAQADVGMNNN----EDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           + DVA  DV  NNN     ++DD NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  NTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

BLAST of Cp4.1LG17g00170 vs. ExPASy TrEMBL
Match: A0A5D3BV16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00430 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 2.46e-29
Identity = 72/110 (65.45%), Postives = 76/110 (69.09%), Query Frame = 0

Query: 3   MMKRTLLLFAVFLLLVFTDATMHNVVKKKDARKLAQ-SFSGQIPKTGVFGGVKYSE--DA 62
           MMKR LLLFAV LLL+  DA M NVV+KK ARKLAQ S   +IPK  VF      E    
Sbjct: 1   MMKRVLLLFAVLLLLLMADAAMSNVVEKKGARKLAQGSGDRRIPKAEVFNDANEPELKKT 60

Query: 63  DVAQADVGMNN-----NEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           DVA  DV  NN     NED DD NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  DVAPDDVVANNIDNDDNED-DDVNLGYKNYGKGSDTETHRYFSSDKPYRP 109

BLAST of Cp4.1LG17g00170 vs. ExPASy TrEMBL
Match: A0A0A0KGD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 3.39e-29
Identity = 69/111 (62.16%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 1   MTMMKRTLLLFAVFLLLVFTDATMHNVVKKKDARKLAQSFSGQ-IPKTGVFGGVKYS--E 60
           M MMKR LLLFA  LLL+  DA    +V+KK ARKLAQ FS +  PK GVF     S  E
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLE 60

Query: 61  DADVAQADVGMNNN----EDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           + DVA  DV  NNN     ++DD NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  NTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6594018.11.93e-6498.08hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575119.19.07e-3060.91hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7013689.11.62e-2960.91hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyro... [more]
TYK02960.15.07e-2965.45uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa][more]
XP_004150985.16.99e-2962.16uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
A0A5D3BV162.46e-2965.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KGD63.39e-2962.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g00170.1Cp4.1LG17g00170.1mRNA