Cp4.1LG16g08610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g08610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein LATERAL ROOT PRIMORDIUM 1-like
Location	Cp4.1LG16: 8171896 .. 8174131 (-)
RNA-Seq Expression	Cp4.1LG16g08610
Synteny	Cp4.1LG16g08610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGCAGAGTCTCCCATTTCTTCTCTCTCTCTCTCTCTCCCATAAACTCCACTTTTTGTTTGTGCTCCACCAAAAAGCCAAAGTTTGTGGCAGTAATCAGCGAGCAGCGGAAGAGTAAGCAGAAGCAGAAGCAGAAGCAGAAGCGGCACAGCAGAAGCAGCAGCATTTCATCCGGTGCTTAATACAAAAGAGAATGAAGATTACAAAAGGCTCCATGAACCCAACCCATCTCTGCTAATTTTGCCTTTTGTTTTTCTTTTTAATCCCTTNAAAAACAAAAAACAAAGAAAAAAATCTCCCCCTTCTTCCCTCCTTTTTCTGTCTACAAAATCTCTCTGCTAGAAATTCAGAGAGACCCCACATCCATATAACGCCTACATAGATTGAGTTCCACGATCCCAAATCTTTTTCTTCAAACCCCAAACCCAAACTGTATATATTTTCCCCTCATTTTCCCAATTTCTTTTGTTTCTATCTCAATTTTATATTTATTTTTATCATTTCTTATCTTGTTTTTCCATATATAAACCCATCCGCCTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGCGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCGCTCCTGCTGTCGCGCCACCTGCCGGACCCCCTGCCCCTTTGTGGTCCGCTGCGGCTGCCGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCCCTTGCCGCCTCTAACTCCGCCACTGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGCAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGAGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGCCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGATGGCTCTTCAGGTTCCGCCTCCGGCACGAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCTAACACCACACCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGGTAAGAATAATTGCCCCAAAATTTAGGGTTCCTTGTTTTTCGGCGTTTTTTCCCCCATAAACTACGGATATTTTTTTATTCCTCGAATCGTTTGGTTCAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGACGAGTACGCGTATCAAGCGGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTTCCTAATGTATCGGAACTGCATTTGAGCGACGGCGGCGGTGGGAGCAGAAATAATCGGAATGGATCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAATTATGGTAATCAAATCCGCTGATATATTTTATTCTAATTTTCTTAACGGTTCAAGGTTCTTCCCAGAATCAATTGGAAGCCAAGGATCTGCAACTGTGTAATCTCATCGGACTCTTCTTCCTTTTCTACTAACCCAATTTTCCCTTGAATCCAATTTATTTATGTCTCATCATCTTCTTGGACTGATTCAGATTGTGTATATCTCACTTCTTTCAACAAATTCTCCTTACTCAATATTCAACTCTTTTCATGCCTTTGATCTTTCACCTTCCATTATTGATCTCTCAATTATTTATTCTATTATTTTTTTGTTCTTGATGCAAATTTGTTGGTT

mRNA sequence

ATGAACGGCAGAGTCTCCCATTTCTTCTCTCTCTCTCTCTCTCCCATAAACTCCACTTTTTGTTTGTGCTCCACCAAAAAGCCAAAGTTTGTGGCAGTAATCAGCGAGCAGCGGAAGAGTAAGCAGAAGCAGAAGCAGAAGCAGAAGCGGCACAGCAGAAGCAGCAGCATTTCATCCGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGCGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCGCTCCTGCTGTCGCGCCACCTGCCGGACCCCCTGCCCCTTTGTGGTCCGCTGCGGCTGCCGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCCCTTGCCGCCTCTAACTCCGCCACTGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGCAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGAGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGCCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGATGGCTCTTCAGGTTCCGCCTCCGGCACGAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCTAACACCACACCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGACGAGTACGCGTATCAAGCGGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTTCCTAATGTATCGGAACTGCATTTGAGCGACGGCGGCGGTGGGAGCAGAAATAATCGGAATGGATCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAATTATGGTAATCAAATCCGCTGATATATTTTATTCTAATTTTCTTAACGGTTCAAGGTTCTTCCCAGAATCAATTGGAAGCCAAGGATCTGCAACTGTGTAATCTCATCGGACTCTTCTTCCTTTTCTACTAACCCAATTTTCCCTTGAATCCAATTTATTTATGTCTCATCATCTTCTTGGACTGATTCAGATTGTGTATATCTCACTTCTTTCAACAAATTCTCCTTACTCAATATTCAACTCTTTTCATGCCTTTGATCTTTCACCTTCCATTATTGATCTCTCAATTATTTATTCTATTATTTTTTTGTTCTTGATGCAAATTTGTTGGTT

Coding sequence (CDS)

ATGAACGGCAGAGTCTCCCATTTCTTCTCTCTCTCTCTCTCTCCCATAAACTCCACTTTTTGTTTGTGCTCCACCAAAAAGCCAAAGTTTGTGGCAGTAATCAGCGAGCAGCGGAAGAGTAAGCAGAAGCAGAAGCAGAAGCAGAAGCGGCACAGCAGAAGCAGCAGCATTTCATCCGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGTGCTTTTGCTGACTGGGCGGCTCCGTCTTCCTCCGCCGGCCGCGCTCCCCCTGATGACCTCTCTCTTGGCTTCAATGCCGCTCCTGCTGTCGCGCCACCTGCCGGACCCCCTGCCCCTTTGTGGTCCGCTGCGGCTGCCGCTCAGAGGTCTCTCAATTATGGCCTTGGATCGGAGATGGGAATGGTCGGGTTACGAGATGTGTATGTTGTCGCTCCGGCTGCCTCTTTTAATCCAAATCCTCACCATCACGACCCTAATCTCATCTCTGATGATCATTCCCTTGCCGCCTCTAACTCCGCCACTGCCCTCGGTGTCGGAGTAGGCGTCGGTGTTATTCCGCTTCTCACTGCTGGCCCCTGCCTCGGCGTTGAGGAGGATAATCTCTTGGGTAGTCGCAGTGGTAGCAGAGGCGGAGGGATTCAGCTATGGCAGCAGAATCAGCAATCGACGCAACATTATTTGAAGAAAACGCCGTCGTCTTCTCTCGACCATCACCTCCATAATGCCTCCGGTACGAACAACGACCTTATCGGAGGAGGAATCGGCGTCTTTGGAGGTTTAGCTTCGTCGTCCTCGGCGACGACCACGTGCCAGGACTGTGGGAACCAAGCGAAGAAAGATTGTAGTCGTGGACGCTGCAGAACTTGTTGTCGAAGCCGAGGGTTCGATTGCGCGACTCACGTGAAGAGCACGTGGGTTCCTGCAGCCCGCCGGAGAGAGCGACAGCTCATGGCCATCACCGGAACCGCCGCAGATGGCTCTTCAGGTTCCGCCTCCGGCACGAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCACACTTCCACATCTAACACCACACCTCCAGGAAGCATCGACACGAGCTCCAGTCATCAAGATGCAGGATTTAAAGAGGAATTACCAGGCCAAATACGTGCACCGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGATGACGGCGAGGACGAGTACGCGTATCAAGCGGTCGTGAAGATCGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGATGGCTTTCCTAATGTATCGGAACTGCATTTGAGCGACGGCGGCGGTGGGAGCAGAAATAATCGGAATGGATCTTCTTCTGCTCCGTTTGTCGATCCATCGGATGTTTACAACGCGGCCGCCTCCGGCAATGGTGGTGCTCCAGGTTTTCTCGGTGGTTCAAATTATGGTAATCAAATCCGCTGA

Protein sequence

MNGRVSHFFSLSLSPINSTFCLCSTKKPKFVAVISEQRKSKQKQKQKQKRHSRSSSISSVVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPLWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNSATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNYGNQIR

Homology

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BLAST of Cp4.1LG16g08610 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 4.7e-80
Identity = 193/355 (54.37%), Postives = 234/355 (65.92%), Query Frame = 0


Query: 131 MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAASNSATALGVGVGVGVIPLLTA 190
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 191 G-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQS--TQH-YLKKTPSSSLDHHLHNASG 250
           G P   VE+   N LG+         + WQ N  +  TQ+ + K T  +++        G
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHETQYLHFKSTNQTTV--------G 120

Query: 251 TNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKST 310
           T+++  G G        S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKST
Sbjct: 121 TSSNNSGSG--------SGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKST 180

Query: 311 WVPAARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPG 370
           WV AARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP 
Sbjct: 181 WVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQ 240

Query: 371 SIDTSSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFL 430
           S +TSSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKIGGHVFKGFL
Sbjct: 241 SFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFL 300

Query: 431 YDQGVEAGDGFPNVSELHLSDGGGGSRNNRNG-SSSAPFVDPSDVYNAAASGNGG 470
           YDQG+E  +GFP++S+LHL    GGS NN NG S+SAP +DP +V      G+GG
Sbjct: 301 YDQGLEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of Cp4.1LG16g08610 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.4e-38
Identity = 112/259 (43.24%), Postives = 143/259 (55.21%), Query Frame = 0


Query: 218 NQQSTQHYLKKTPSSSLDHHLHNASGTNNDLI-GGGIGVFGGLASSSSATTTCQDCGNQA 277
           N  S+Q   +  P   L HH  +    + DL  G  I V     SS S T +C+DCGNQA
Sbjct: 42  NPSSSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQA 101

Query: 278 KKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQL---MAITGTAADGSSGSA--S 337
           KKDC+  RCRTCC+SRGFDC+THV+STW+P ARRRERQ    M+ +G      SG A   
Sbjct: 102 KKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGG 161

Query: 338 GTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAV 397
           G+  P+     T   TS+S+  P  S        +A F    PG++ + A+F+CV+++ V
Sbjct: 162 GSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMG--EASF----PGEVSSDALFRCVKMSGV 221

Query: 398 DDGED-EYAYQAVVKIGGHVFKGFLYDQGVEA-----GDGFPNVSELHLSDGGGGSRNN- 457
           DDG D +YAYQ  V IGGH+FKG LYDQG E+     G G  +        GGGG   N 
Sbjct: 222 DDGGDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNP 281

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BLAST of Cp4.1LG16g08610 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.0e-34
Identity = 109/274 (39.78%), Postives = 143/274 (52.19%), Query Frame = 0


Query: 202 GSRSGSRGGGIQLWQQ-NQQSTQHYLKKTPSSSLDHHLHNA----SGTNNDLIGGGIGVF 261
           G    S  G ++LWQ  N Q      ++     LD +   A      +N  LI    G  
Sbjct: 47  GEAGPSYKGTLELWQHPNNQEIIFQQQQQQQQRLDLYTSAAGLGVGPSNRSLIETSGGAL 106

Query: 262 GGLAS-SSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQL 321
             + S S S   +CQDCGNQ+KKDCS  RCRTCC+SRG DC THVKSTWVPAA+RRERQ 
Sbjct: 107 MMMRSGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQ 166

Query: 322 MAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPG 381
              TG       GS    ++ R+ A      TS + T  P +   ++S  + G     P 
Sbjct: 167 QLSTGQQPQQLGGSVPKRQRERIPARS----TSMAYTRIPSN---NTSGLEVG---NFPP 226

Query: 382 QIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG-VEAGDGFPNVSELHL 441
           ++ + AVF+CVRV++VDD E+EYAY+  V IGGHVFKG LYDQG  E          L+L
Sbjct: 227 EVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGSQPLNL 286

Query: 442 SDGGGGS---------RNNRNGSSSAPFVDPSDV 460
              G  +          N   GS+S  ++DP+ +
Sbjct: 287 ITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASL 310

[Close]

BLAST of Cp4.1LG16g08610 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 6.6e-34
Identity = 96/260 (36.92%), Postives = 133/260 (51.15%), Query Frame = 0


Query: 203 SRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHL-----------HNASGTNNDLIGG 262
           S S +  G ++LWQ + Q    +  +     LD +            HN    + +    
Sbjct: 60  SSSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGETSTA 119

Query: 263 GIG-------VFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTW 322
           G G       +  G +   S   +CQDCGNQAKKDCS  RCRTCC+SRGF+C+THV+STW
Sbjct: 120 GAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTW 179

Query: 323 VPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSH 382
           VPAA+RRERQ    T           S  K+ R     T+S    +       ++  +  
Sbjct: 180 VPAAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGN-- 239

Query: 383 QDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYD--QGVEA 442
                    P ++ + AVF+CVRV++V+DGE+E+AYQ  V IGGH+FKG LYD   G   
Sbjct: 240 --------FPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSG 299

[Close]

BLAST of Cp4.1LG16g08610 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.9e-31
Identity = 102/273 (37.36%), Postives = 133/273 (48.72%), Query Frame = 0


Query: 216 QQNQQSTQHYLKKTPSSSLDHHLHNASGTNNDLIGGGIGVF-------GGLASSSSATTT 275
           QQ QQ  QH        S       +S  NN+     +          GG   +      
Sbjct: 65  QQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFTVTRQGGMN 124

Query: 276 CQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSG 335
           CQDCGNQAKKDC   RCRTCC+SRGF C THVKSTWVPAA+RRER     +      SS 
Sbjct: 125 CQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSR 184

Query: 336 SASGTKKPRLIASQTTSHTSTSNTTPPGS------IDTSSSHQDAGFKEELPGQIRAPAV 395
                K+ R  AS   ++    ++   GS      +  ++S+      + LP ++ +PA+
Sbjct: 185 ETQNAKRLR-EASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVNSPAI 244

Query: 396 FKCVRVTAVDDGEDE--YAYQAVVKIGGHVFKGFLYDQGVEAGDGF-----------PNV 455
           F+CVRV+++++ ED+  YAYQ  V IGGH+FKG LYDQG E  D              NV
Sbjct: 245 FRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTATTTNV 304

Query: 456 SELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNA 463
            E       G   NN NG      +DPS +Y A
Sbjct: 305 EETATKTVTG---NNNNGL----MLDPSSLYPA 329

[Close]

BLAST of Cp4.1LG16g08610 vs. NCBI nr
Match: XP_023512287.1 (protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 828 bits (2140), Expect = 1.86e-301
Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 0


Query: 59  SVVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPLWSAAAA 118
           SVVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPLWSAAAA
Sbjct: 4   SVVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPLWSAAAA 63

Query: 119 AQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNSATALGVG 178
           AQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNSATALGVG
Sbjct: 64  AQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNSATALGVG 123

Query: 179 VGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHL 238
           VGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHL
Sbjct: 124 VGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHL 183

Query: 239 HNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCAT 298
           HNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCAT
Sbjct: 184 HNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCAT 243

Query: 299 HVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSI 358
           HVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSI
Sbjct: 244 HVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSI 303

Query: 359 DTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQ 418
           DTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQ
Sbjct: 304 DTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQ 363

Query: 419 GVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSN 478
           GVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSN
Sbjct: 364 GVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSN 423

Query: 479 YGNQIR 484
           YGNQIR
Sbjct: 424 YGNQIR 429

[Close]

BLAST of Cp4.1LG16g08610 vs. NCBI nr
Match: KAG6570417.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 801 bits (2069), Expect = 1.46e-288
Identity = 413/420 (98.33%), Postives = 416/420 (99.05%), Query Frame = 0


Query: 60  VVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPLWSAAAAA 119
           +VATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAP+WSAAAAA
Sbjct: 7   LVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPMWSAAAAA 66

Query: 120 QRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNSATALGVGV 179
           QRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLA SNSATALGVGV
Sbjct: 67  QRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNSATALGVGV 126

Query: 180 GVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLH 239
           GVGVIPLLTAGPCLGVEEDNLL SRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLH
Sbjct: 127 GVGVIPLLTAGPCLGVEEDNLLASRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLH 186

Query: 240 NASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATH 299
           NASGTN DLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATH
Sbjct: 187 NASGTN-DLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATH 246

Query: 300 VKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSID 359
           VKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSID
Sbjct: 247 VKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSID 306

Query: 360 TSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 419
           TSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 307 TSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 366

Query: 420 VEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNY 479
           VEAGDGFPNVSEL+LSDGGGG RNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNY
Sbjct: 367 VEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNY 425

[Close]

BLAST of Cp4.1LG16g08610 vs. NCBI nr
Match: XP_022944578.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata])

HSP 1 Score: 724 bits (1868), Expect = 6.08e-261
Identity = 369/373 (98.93%), Postives = 371/373 (99.46%), Query Frame = 0


Query: 112 LWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNS 171
           +WSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLA SNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 172 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 231
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQN QSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120

Query: 232 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 291
           SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 292 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 351
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 352 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 411
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 412 KGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 471
           KGFLYDQGVEAGDGFPNVSEL+LSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360

Query: 472 GFLGGSNYGNQIR 484
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 373

[Close]

BLAST of Cp4.1LG16g08610 vs. NCBI nr
Match: KAG7010293.1 (Protein LATERAL ROOT PRIMORDIUM 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 717 bits (1852), Expect = 1.60e-258
Identity = 368/373 (98.66%), Postives = 370/373 (99.20%), Query Frame = 0


Query: 112 LWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNS 171
           +WSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLA SNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 172 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 231
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 232 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 291
           SSLDHHLHNASGTN DLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGTN-DLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 292 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 351
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 352 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 411
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 412 KGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 471
           KGFLYDQGVEAGDGFPNVSEL+LSDGGGG RNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360

Query: 472 GFLGGSNYGNQIR 484
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 372

[Close]

BLAST of Cp4.1LG16g08610 vs. NCBI nr
Match: XP_022987026.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima])

HSP 1 Score: 713 bits (1841), Expect = 7.30e-257
Identity = 367/373 (98.39%), Postives = 369/373 (98.93%), Query Frame = 0


Query: 112 LWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNS 171
           +WSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLA SNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 172 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 231
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 232 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 291
           SSLDHHLHNASGTN DLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGTN-DLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 292 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 351
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 352 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 411
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 412 KGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 471
           KGFLYDQGV+AGDGFPNVSELHLSDGGGGSRNNRNGSS APFVDPSDVYN AASGNGGAP
Sbjct: 301 KGFLYDQGVDAGDGFPNVSELHLSDGGGGSRNNRNGSS-APFVDPSDVYNVAASGNGGAP 360

Query: 472 GFLGGSNYGNQIR 484
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 371

[Close]

BLAST of Cp4.1LG16g08610 vs. ExPASy TrEMBL
Match: A0A6J1FY67 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111448991 PE=3 SV=1)

HSP 1 Score: 724 bits (1868), Expect = 2.95e-261
Identity = 369/373 (98.93%), Postives = 371/373 (99.46%), Query Frame = 0


Query: 112 LWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNS 171
           +WSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLA SNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 172 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 231
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQN QSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120

Query: 232 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 291
           SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 292 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 351
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 352 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 411
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 412 KGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 471
           KGFLYDQGVEAGDGFPNVSEL+LSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360

Query: 472 GFLGGSNYGNQIR 484
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 373

[Close]

BLAST of Cp4.1LG16g08610 vs. ExPASy TrEMBL
Match: A0A6J1JCY6 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita maxima OX=3661 GN=LOC111484595 PE=3 SV=1)

HSP 1 Score: 713 bits (1841), Expect = 3.53e-257
Identity = 367/373 (98.39%), Postives = 369/373 (98.93%), Query Frame = 0


Query: 112 LWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNS 171
           +WSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLA SNS
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 172 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 231
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 232 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 291
           SSLDHHLHNASGTN DLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS
Sbjct: 121 SSLDHHLHNASGTN-DLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 292 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 351
           RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 352 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 411
           TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 412 KGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 471
           KGFLYDQGV+AGDGFPNVSELHLSDGGGGSRNNRNGSS APFVDPSDVYN AASGNGGAP
Sbjct: 301 KGFLYDQGVDAGDGFPNVSELHLSDGGGGSRNNRNGSS-APFVDPSDVYNVAASGNGGAP 360

Query: 472 GFLGGSNYGNQIR 484
           GFLGGSNYGNQIR
Sbjct: 361 GFLGGSNYGNQIR 371

[Close]

BLAST of Cp4.1LG16g08610 vs. ExPASy TrEMBL
Match: A0A5A7V0Q8 (Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00770 PE=3 SV=1)

HSP 1 Score: 673 bits (1737), Expect = 1.49e-240
Identity = 361/428 (84.35%), Postives = 378/428 (88.32%), Query Frame = 0


Query: 60  VVATTRRLPSDSGAFADWAAPSSSAGRA-PPDDLSLGFNAAPAVAPPAGPPAPLWSAAAA 119
           VVATTRRLPSDSGAFADWAAP+SSA RA PPDDLSLGFNAAP+ APP GPP  +WSAAA 
Sbjct: 2   VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAA- 61

Query: 120 AQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNSATALGVG 179
            QRSLNYGLGSEMGMVGLRDVYVVAPA+SFN NPH HD NL+SD HSLA SN ATALGVG
Sbjct: 62  -QRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVG 121

Query: 180 VGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHL 239
           VGVGVIPLLTAGPC+GVEE+NL G+RS +RGGGIQ     QQSTQHYLKKTPS SLDH  
Sbjct: 122 VGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGSLDH-- 181

Query: 240 HNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCAT 299
              SGTNN+LIGGGIG  GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRSRGFDCAT
Sbjct: 182 --VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCAT 241

Query: 300 HVKSTWVPAARRRERQLMAITGTAA-DGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGS 359
           HVKSTWVPAARRRERQLMA+T TAA DGSS S SG KKPRLI SQTTSHTSTSNTTPP S
Sbjct: 242 HVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRS 301

Query: 360 IDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYD 419
           +DTSSSHQD G KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHVFKGFLYD
Sbjct: 302 LDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYD 361

Query: 420 QGVEAGDGFPNVSELHLSDG--GGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLG 479
           QGVEAGDGFPNVSELHL DG  GGG+ NNRNGSSS+P VDPSDVYN AASG+GG PGFLG
Sbjct: 362 QGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLG 419

Query: 480 GSNYGNQI 483
           GSNYGNQI
Sbjct: 422 GSNYGNQI 419

[Close]

BLAST of Cp4.1LG16g08610 vs. ExPASy TrEMBL
Match: A0A1S3BMJ0 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=3 SV=1)

HSP 1 Score: 594 bits (1531), Expect = 4.43e-210
Identity = 316/375 (84.27%), Postives = 331/375 (88.27%), Query Frame = 0


Query: 112 LWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNS 171
           +WSAAA  QRSLNYGLGSEMGMVGLRDVYVVAPA+SFN NPH HD NL+SD HSLA SN 
Sbjct: 1   MWSAAA--QRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNP 60

Query: 172 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 231
           ATALGVGVGVGVIPLLTAGPC+GVEE+NL G+RS +RGGGIQ     QQSTQHYLKKTPS
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPS 120

Query: 232 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 291
            SLDH     SGTNN+LIGGGIG  GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 GSLDH----VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 292 RGFDCATHVKSTWVPAARRRERQLMAITGTAA-DGSSGSASGTKKPRLIASQTTSHTSTS 351
           RGFDCATHVKSTWVPAARRRERQLMA+T TAA DGSS S SG KKPRLI SQTTSHTSTS
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTS 240

Query: 352 NTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHV 411
           NTTPP S+DTSSSHQD G KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHV
Sbjct: 241 NTTPPRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHV 300

Query: 412 FKGFLYDQGVEAGDGFPNVSELHLSDG--GGGSRNNRNGSSSAPFVDPSDVYNAAASGNG 471
           FKGFLYDQGVEAGDGFPNVSELHL DG  GGG+ NNRNGSSS+P VDPSDVYN AASG+G
Sbjct: 301 FKGFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSG 360

Query: 472 GAPGFLGGSNYGNQI 483
           G PGFLGGSNYGNQI
Sbjct: 361 GVPGFLGGSNYGNQI 365

[Close]

BLAST of Cp4.1LG16g08610 vs. ExPASy TrEMBL
Match: A0A6J1H2U0 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111459511 PE=3 SV=1)

HSP 1 Score: 588 bits (1517), Expect = 5.54e-208
Identity = 310/373 (83.11%), Postives = 326/373 (87.40%), Query Frame = 0


Query: 112 LWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNS 171
           +WSAAAA+QRSLNYGLGSEM MVGLRDV+VVAPA+SFNPNPHHHD NL+SD HSLA SNS
Sbjct: 1   MWSAAAASQRSLNYGLGSEMSMVGLRDVFVVAPASSFNPNPHHHDNNLLSDPHSLAVSNS 60

Query: 172 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 231
           ATALGVGV    IPLLTAGPCLGVEEDNLL +RS +RGGGIQLWQQN     HYLKK PS
Sbjct: 61  ATALGVGV----IPLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQN-----HYLKKMPS 120

Query: 232 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 291
           S LDHHLHN S  NN LI  GIG+ GGLASSSSATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 S-LDHHLHNPSAANNGLIDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRS 180

Query: 292 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 351
           RGFDC THVKSTWVPAARRRERQLM +T  AA GSS S SG KK RLIASQTTS TSTSN
Sbjct: 181 RGFDCTTHVKSTWVPAARRRERQLMGVTANAAAGSSASTSGAKKQRLIASQTTSRTSTSN 240

Query: 352 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 411
           TTPP S+DTSSSHQDAGF E LPGQ+RAPAVFKCVRVTAVDDG+DEYAYQAVVKIGGH+F
Sbjct: 241 TTPPRSLDTSSSHQDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIF 300

Query: 412 KGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNG-SSSAPFVDPSDVYNAAASGNGGA 471
           KGFLYDQGVE GD FPNVSELHL DGGG +RNNRNG SSS+P VDPSDVYNAAA+G GGA
Sbjct: 301 KGFLYDQGVEPGDEFPNVSELHLGDGGGITRNNRNGVSSSSPLVDPSDVYNAAATGGGGA 360

Query: 472 PGFLGGSNYGNQI 483
           P FLGGSNYGNQI
Sbjct: 361 PCFLGGSNYGNQI 363

[Close]

BLAST of Cp4.1LG16g08610 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 331.3 bits (848), Expect = 1.3e-90
Identity = 230/439 (52.39%), Postives = 279/439 (63.55%), Query Frame = 0


Query: 61  VATTRR--LP-SDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAV------APPAGPPAP 120
           VATTRR  LP SDSGAF DWAA +++  RA  +DLSLGFNA  +V      +       P
Sbjct: 9   VATTRRHNLPTSDSGAFTDWAATTTTPSRA-TEDLSLGFNAGSSVIHGGLGSASVAAGVP 68

Query: 121 LWSAAAAAQRSLNYGLGS-----EMGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHS 180
            W   +    S+ YGL S     EMGMVGLRDV++VAPA       HH +  +IS  DH 
Sbjct: 69  SWPPGS----SVRYGLPSSAAATEMGMVGLRDVFLVAPAY------HHQNAGVISGSDH- 128

Query: 181 LAASNSATALGVGVGVGVIPLLTAG-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQS- 240
               NS  A    +GVGVIPLLTAG P   VE+   N LG+         + WQ N  + 
Sbjct: 129 ---MNSNAAAAAALGVGVIPLLTAGTPQQNVEDSDINFLGNN--------RRWQNNNNNH 188

Query: 241 -TQH-YLKKTPSSSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKD 300
            TQ+ + K T  +++        GT+++  G G        S +S T TCQDCGNQAKK+
Sbjct: 189 ETQYLHFKSTNQTTV--------GTSSNNSGSG--------SGASGTATCQDCGNQAKKE 248

Query: 301 CSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSS-GSASGTKKPRL 360
           C + RCRTCC+SRGFDC+THVKSTWV AARRRERQ+M        GSS  ++SGTKKPR+
Sbjct: 249 CKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRI 308

Query: 361 IAS------QTTSHTSTSNTTPPGSIDTSSSHQD-AGFKEELPGQIRAPAVFKCVRVTAV 420
           + S      Q TSHTSTSN TPP S +TSSS QD  G +E  PGQ+RA AVFKCVRVTAV
Sbjct: 309 VGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAV 368

Query: 421 DDGEDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLSDGGGGSRNNRNG-SSS 470
           +DG+DEYAYQAVVKIGGHVFKGFLYDQG+E  +GFP++S+LHL    GGS NN NG S+S
Sbjct: 369 EDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLHL----GGSANNHNGVSAS 403

[Close]

BLAST of Cp4.1LG16g08610 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 300.1 bits (767), Expect = 3.3e-81
Identity = 193/355 (54.37%), Postives = 234/355 (65.92%), Query Frame = 0


Query: 131 MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAASNSATALGVGVGVGVIPLLTA 190
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 191 G-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQS--TQH-YLKKTPSSSLDHHLHNASG 250
           G P   VE+   N LG+         + WQ N  +  TQ+ + K T  +++        G
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHETQYLHFKSTNQTTV--------G 120

Query: 251 TNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKST 310
           T+++  G G        S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKST
Sbjct: 121 TSSNNSGSG--------SGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKST 180

Query: 311 WVPAARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPG 370
           WV AARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP 
Sbjct: 181 WVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQ 240

Query: 371 SIDTSSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFL 430
           S +TSSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKIGGHVFKGFL
Sbjct: 241 SFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFL 300

Query: 431 YDQGVEAGDGFPNVSELHLSDGGGGSRNNRNG-SSSAPFVDPSDVYNAAASGNGG 470
           YDQG+E  +GFP++S+LHL    GGS NN NG S+SAP +DP +V      G+GG
Sbjct: 301 YDQGLEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of Cp4.1LG16g08610 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 300.1 bits (767), Expect = 3.3e-81
Identity = 193/355 (54.37%), Postives = 234/355 (65.92%), Query Frame = 0


Query: 131 MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAASNSATALGVGVGVGVIPLLTA 190
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 191 G-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQS--TQH-YLKKTPSSSLDHHLHNASG 250
           G P   VE+   N LG+         + WQ N  +  TQ+ + K T  +++        G
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHETQYLHFKSTNQTTV--------G 120

Query: 251 TNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKST 310
           T+++  G G        S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKST
Sbjct: 121 TSSNNSGSG--------SGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKST 180

Query: 311 WVPAARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPG 370
           WV AARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP 
Sbjct: 181 WVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQ 240

Query: 371 SIDTSSSHQD-AGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFL 430
           S +TSSS QD  G +E  PGQ+RA AVFKCVRVTAV+DG+DEYAYQAVVKIGGHVFKGFL
Sbjct: 241 SFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFL 300

Query: 431 YDQGVEAGDGFPNVSELHLSDGGGGSRNNRNG-SSSAPFVDPSDVYNAAASGNGG 470
           YDQG+E  +GFP++S+LHL    GGS NN NG S+SAP +DP +V      G+GG
Sbjct: 301 YDQGLEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of Cp4.1LG16g08610 vs. TAIR 10
Match: AT5G12330.3 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-42
Identity = 123/249 (49.40%), Postives = 151/249 (60.64%), Query Frame = 0


Query: 131 MGMVGLRDVYVVAPAASFNPNPHHHDPNLIS-DDHSLAASNSATALGVGVGVGVIPLLTA 190
           MGMVGLRDV++VAPA       HH +  +IS  DH     NS  A    +GVGVIPLLTA
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDH----MNSNAAAAAALGVGVIPLLTA 60

Query: 191 G-PCLGVEED--NLLGSRSGSRGGGIQLWQQNQQS--TQH-YLKKTPSSSLDHHLHNASG 250
           G P   VE+   N LG+         + WQ N  +  TQ+ + K T  +++        G
Sbjct: 61  GTPQQNVEDSDINFLGNN--------RRWQNNNNNHETQYLHFKSTNQTTV--------G 120

Query: 251 TNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKST 310
           T+++  G G        S +S T TCQDCGNQAKK+C + RCRTCC+SRGFDC+THVKST
Sbjct: 121 TSSNNSGSG--------SGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKST 180

Query: 311 WVPAARRRERQLMAITGTAADGSS-GSASGTKKPRLIAS------QTTSHTSTSNTTPPG 366
           WV AARRRERQ+M        GSS  ++SGTKKPR++ S      Q TSHTSTSN TPP 
Sbjct: 181 WVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQ 214

[Close]

BLAST of Cp4.1LG16g08610 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-39
Identity = 112/259 (43.24%), Postives = 143/259 (55.21%), Query Frame = 0


Query: 218 NQQSTQHYLKKTPSSSLDHHLHNASGTNNDLI-GGGIGVFGGLASSSSATTTCQDCGNQA 277
           N  S+Q   +  P   L HH  +    + DL  G  I V     SS S T +C+DCGNQA
Sbjct: 42  NPSSSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQA 101

Query: 278 KKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQL---MAITGTAADGSSGSA--S 337
           KKDC+  RCRTCC+SRGFDC+THV+STW+P ARRRERQ    M+ +G      SG A   
Sbjct: 102 KKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGG 161

Query: 338 GTKKPRLIASQTTSHTSTSNTTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAV 397
           G+  P+     T   TS+S+  P  S        +A F    PG++ + A+F+CV+++ V
Sbjct: 162 GSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMG--EASF----PGEVSSDALFRCVKMSGV 221

Query: 398 DDGED-EYAYQAVVKIGGHVFKGFLYDQGVEA-----GDGFPNVSELHLSDGGGGSRNN- 457
           DDG D +YAYQ  V IGGH+FKG LYDQG E+     G G  +        GGGG   N 
Sbjct: 222 DDGGDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNP 281

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g08610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	4.7e-80	54.37	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	3.4e-38	43.24	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9XGX0	3.0e-34	39.78	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
Q9SD40	6.6e-34	36.92	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9LQZ5	8.9e-31	37.36	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]

BLAST of Cp4.1LG16g08610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512287.1	1.86e-301	100.00	protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo]	[more]
KAG6570417.1	1.46e-288	98.33	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022944578.1	6.08e-261	98.93	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata]	[more]
KAG7010293.1	1.60e-258	98.66	Protein LATERAL ROOT PRIMORDIUM 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022987026.1	7.30e-257	98.39	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG16g08610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FY67	2.95e-261	98.93	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1JCY6	3.53e-257	98.39	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita maxima OX=3661 GN=LOC1114845...	[more]
A0A5A7V0Q8	1.49e-240	84.35	Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BMJ0	4.43e-210	84.27	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1H2U0	5.54e-208	83.11	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Cp4.1LG16g08610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.4	1.3e-90	52.39	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.2	3.3e-81	54.37	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	3.3e-81	54.37	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.3	1.8e-42	49.40	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	2.4e-39	43.24	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05142	DUF702	coord: 266..421 e-value: 2.4E-60 score: 203.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 437..454
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 431..454
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..368
None	No IPR available	PANTHER	PTHR31604:SF30	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 131..483
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 373..420 e-value: 5.1E-30 score: 101.2
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 268..310 e-value: 4.0E-25 score: 85.5
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 131..483

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g08610.1	Cp4.1LG16g08610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding