Cp4.1LG16g08580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g08580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type domain-containing protein
Location	Cp4.1LG16: 8157994 .. 8160563 (-)
RNA-Seq Expression	Cp4.1LG16g08580
Synteny	Cp4.1LG16g08580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGGAAAACCCCAATGTCGGTTGAAGCTAAATTACGTAAAAAGGTTTAGAATAAAACAAGGGAAGTAATTTGGGTCAAAAGAAATCAAATTTGACTATGAACATATAACCCTGAACTTAATATAAAGAGGCTTAATCTTCACAAGTTCTCATTTTTTCACCAAGAACTCTTTGGATCTCGAGTAGATAATATTTTCGAGCATCTGTTATTTTCTCTTCTGGTTCAGAATAATTCTCAGCATCGCCATTCTTTTCAAAGTTTTGATTTGTGCTGAAGAACTGTTCGCGTCCTGTGTAATCTAAAGCGAGAAAGATCGGAGGAGAAACCCTCGCGTACTCGCTATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTTTTATTCTTTCTCTTCATTTCGAAGTTGATATACTTTCACAAACTTTCTTTATCGTAGAAAATCAGCGGCGTAAAACTTGGCATGAGAATGGTCGTCTCCGATTTGTGTTGATTTAGTCTTGTTGTCATCCATTTTCAAGATTTGCTTTTCTGGGGGGCTAATTGAAGTCTGAGATCGTCGGTTCAGTCTTGTTTTCTTTCATTGTCTAGATTACGCACATCGGGAGGCTTGTTTTCTGCGTTTATCATCTAGGAAGAATATGGTTAAAACGAATTGAATTGATGTTTGTACCATAAGAAGCAGGAGCAATTGTTTATGTTTATCCGACTGCCAGTTTGAATTGCTTCGTCTCCCACTTGCGAATTTGGTCGATCTCCTGCGCATGCTTATTTATTTTTTGAAAACCTTCCTCTGTTGCAGTCAGAGTTGCATATCTATGATTCTGTTGGTCTTTTTCAATTATTCGCGCATACATACTTCGAGGATTGCTAACTTGCTGTACTTGCACGTTCAGGTGGAAATGTGGAAGAAGTTAGAAATTCAAGGGACCGGGCATGGGAGCCATGATGGCGCTTGTGCAATTTGCTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGGTTAGTTCTAATGGATTAATCTTTTGTCTACTAATTAATGTTTTTTATGGAATGACTTTCACCTGCTTCAATACATTAGGTAATTGTTGATCTGTTTCTTTCCAGTATTTGTATGGGAATCCTTTTTGCAGTCAAATGTTGAAGTTCTATAGATGGTGTAATTCTAATGCCTGCTTTTATCATTTATATTTCATTTTGTTGCGACTATATGCTTGTAATGGAGATGGAGTGTAAAGTTCTTGCGAACATATATTCCTGGGACTCTGCTAAACTTTGTGGGAGAAAATTCAATGTATCCATATCGTCTTTTGTGCAATGTTTCTAATATTACTTGAGGTTGTTCGGATTTAATTGAAGAGGTATGCTGTTCTAGGCTTATAACCAAAGCATCTTGGAGTTGGGAAATTGTATGGTACTGAGCCTAATGGTTAATCTATAGTTTGATGTTCTTTGAAAGTTATGTCAGAAACTAGCAGAAGTCATTATATAGAAGTTAAAATGCTTGCTTGGTGGGACTTGGATAGAAATTTATTGTTCTTTGAAGCATTAGAAATTTTGTCCTTGTTTGTTTGTGGAATGAAGGTGACCTTTTATAGCTGTGCATATGGGCGTTGTCTTATTTTGTTTCATCTTTCTTTAACTTTCATGAAGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTTGACGGGAGGTATGTCCATTCATCGTTCTATGGACCTTTGATAGTTTAGAGTTTGAACTCTAGGTGGCCTGGTATCTTTTTTAAATTACTGTTCTTACTATATATTGCTTGTGCATTGTTTAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAACTTTATGTCGAGCTCCTGTATAGAAATAAGCCCTGCGCTTGACCTTGTGTACAGTTTCTAAGGTTCATTTTAGTTTGCTGGGCGATGTGCCTTACCAGATGCTGGTAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATTATAAACATTGGCTCTCAAAAGTAATCATAAAAGTATTAAAACTTTA

mRNA sequence

ATGGATGGGAAAACCCCAATGTCGGTTGAAGCTAAATTACGTAAAAAGGTTTAGAATAAAACAAGGGAAGTAATTTGGGTCAAAAGAAATCAAATTTGACTATGAACATATAACCCTGAACTTAATATAAAGAGGCTTAATCTTCACAAGTTCTCATTTTTTCACCAAGAACTCTTTGGATCTCGAGTAGATAATATTTTCGAGCATCTGTTATTTTCTCTTCTGGTTCAGAATAATTCTCAGCATCGCCATTCTTTTCAAAGTTTTGATTTGTGCTGAAGAACTGTTCGCGTCCTGTGTAATCTAAAGCGAGAAAGATCGGAGGAGAAACCCTCGCGTACTCGCTATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTGGAAATGTGGAAGAAGTTAGAAATTCAAGGGACCGGGCATGGGAGCCATGATGGCGCTTGTGCAATTTGCTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAACTTTATGTCGAGCTCCTGTATAGAAATAAGCCCTGCGCTTGACCTTGTGTACAGTTTCTAAGGTTCATTTTAGTTTGCTGGGCGATGTGCCTTACCAGATGCTGGTAGCTCCAAAGAAATCTAAGATGGAGATCATAAATACCTACGAGGTGTACCATTGAATTCTTTATATTATAAACATTGGCTCTCAAAAGTAATCATAAAAGTATTAAAACTTTA

Coding sequence (CDS)

ATGACTTCTTCCGGAATCTCTCTCAAAAGCGCCGAATTGTCAGATGCCGTTCAAGACCTGAAAGTTTGCGACCAGGTGGAAATGTGGAAGAAGTTAGAAATTCAAGGGACCGGGCATGGGAGCCATGATGGCGCTTGTGCAATTTGCTTAAATAAAATATCCCTGCCAGAAACTGCTTTAGTTAGAGGTTGCGAACACGCCTATTGTACGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCCACCTGTCCGCAATGTAAACATCCATTCGAGTTCCTGATTGTGCATCGTTCTCTTGACGGGAGCATCCATGACTATATGTTTGAGGAGAGCGTATGCCTACTTCTGAGAGCTTCGTGGTATGAGCCACTGATCGTTAAAGATCGGGAGGAAACCTATGATGATCCTGAGGAGTACTATCCTTATGAGGATCAGGACGAAGAGCTTGAGGAAGCTTACCTGGGTGCTTCGCCAAGTCTCCGAATCGGCAATCGGAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTTTAAGGCCAGAGTTTTCTGGAGCTAGCTCATCACGGGAGCCTCCGACAAAAGATGCTTCCAAGGATAAAACAGGTCGACGAGCTAAAAGGGCATTGAAACGGGAAGCTGCTGATAAAGCTGCAGCAGCTAAGCATCAAGAACATTTAGCTAGGTTTGGCCTGAATTAA

Protein sequence

MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN

Homology

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BLAST of Cp4.1LG16g08580 vs. ExPASy Swiss-Prot
Match: Q99590 (Protein SCAF11 OS=Homo sapiens OX=9606 GN=SCAF11 PE=1 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 4.2e-05
Identity = 21/60 (35.00%), Postives = 31/60 (51.67%), Query Frame = 0


Query: 46  CAICLNKISLPETALVRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSI 105
           C ICLN +   E      C H +C TCIL+WA      +CP  + PF+ +    +L+G +
Sbjct: 41  CPICLNCLLEKEVGFPESCNHVFCMTCILKWAE--TLASCPIDRKPFQAVFKFSALEGYV 98

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BLAST of Cp4.1LG16g08580 vs. NCBI nr
Match: XP_023511780.1 (uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 486 bits (1252), Expect = 1.96e-173
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL
Sbjct: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240
           EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN
Sbjct: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240

[Close]

BLAST of Cp4.1LG16g08580 vs. NCBI nr
Match: XP_022943783.1 (uncharacterized protein LOC111448431 [Cucurbita moschata])

HSP 1 Score: 483 bits (1244), Expect = 3.25e-172
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL
Sbjct: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240
           EARPVLRPEFSGASSSREP TKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN
Sbjct: 181 EARPVLRPEFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240

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BLAST of Cp4.1LG16g08580 vs. NCBI nr
Match: KAG6570419.1 (hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 476 bits (1224), Expect = 8.74e-169
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL
Sbjct: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLA 235
           EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLA 235

[Close]

BLAST of Cp4.1LG16g08580 vs. NCBI nr
Match: XP_022987030.1 (uncharacterized protein LOC111484597 [Cucurbita maxima])

HSP 1 Score: 466 bits (1200), Expect = 1.60e-165
Identity = 233/240 (97.08%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           MTSSGISLKSAELSDAVQDLKVCDQ EMWKKLE+Q TGHGSH G+CAICLNKISLPETAL
Sbjct: 1   MTSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSH-GSCAICLNKISLPETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLG SPSLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240
           EARPVLRPEFSGASSSREP TKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN
Sbjct: 181 EARPVLRPEFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 239

[Close]

BLAST of Cp4.1LG16g08580 vs. NCBI nr
Match: XP_022153003.1 (uncharacterized protein LOC111020607 [Momordica charantia])

HSP 1 Score: 428 bits (1101), Expect = 2.28e-150
Identity = 211/243 (86.83%), Postives = 225/243 (92.59%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           MTSSGIS++ AE+SDAVQ+L++CDQV++ KK+EIQGTGHGSHDGACAICLNKI+L ETAL
Sbjct: 1   MTSSGISIEGAEMSDAVQELEICDQVKIGKKVEIQGTGHGSHDGACAICLNKIALQETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           VRGCEHAYC TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDG IHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCVTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGGIHDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWY PL+V+DREETYDDPEEYYPYED DEELEE YLGAS SLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 SWYIPLVVEDREETYDDPEEYYPYEDDDEELEEDYLGASSSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRP---EFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 240
           EARP+ RP   EF+ ASSSREP  KDASKDKTGRRAKRALKREAADKAAAAKHQEHLAR 
Sbjct: 181 EARPIFRPSVPEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARL 240

[Close]

BLAST of Cp4.1LG16g08580 vs. ExPASy TrEMBL
Match: A0A6J1FXD4 (uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC111448431 PE=4 SV=1)

HSP 1 Score: 483 bits (1244), Expect = 1.57e-172
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL
Sbjct: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240
           EARPVLRPEFSGASSSREP TKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN
Sbjct: 181 EARPVLRPEFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240

[Close]

BLAST of Cp4.1LG16g08580 vs. ExPASy TrEMBL
Match: A0A6J1JFP2 (uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597 PE=4 SV=1)

HSP 1 Score: 466 bits (1200), Expect = 7.76e-166
Identity = 233/240 (97.08%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           MTSSGISLKSAELSDAVQDLKVCDQ EMWKKLE+Q TGHGSH G+CAICLNKISLPETAL
Sbjct: 1   MTSSGISLKSAELSDAVQDLKVCDQEEMWKKLEMQRTGHGSH-GSCAICLNKISLPETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLG SPSLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGDSPSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRPEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 240
           EARPVLRPEFSGASSSREP TKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN
Sbjct: 181 EARPVLRPEFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGLN 239

[Close]

BLAST of Cp4.1LG16g08580 vs. ExPASy TrEMBL
Match: A0A6J1DGD3 (uncharacterized protein LOC111020607 OS=Momordica charantia OX=3673 GN=LOC111020607 PE=4 SV=1)

HSP 1 Score: 428 bits (1101), Expect = 1.10e-150
Identity = 211/243 (86.83%), Postives = 225/243 (92.59%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           MTSSGIS++ AE+SDAVQ+L++CDQV++ KK+EIQGTGHGSHDGACAICLNKI+L ETAL
Sbjct: 1   MTSSGISIEGAEMSDAVQELEICDQVKIGKKVEIQGTGHGSHDGACAICLNKIALQETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           VRGCEHAYC TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDG IHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCVTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGGIHDYMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWY PL+V+DREETYDDPEEYYPYED DEELEE YLGAS SLRIGNRRWGDNGYVRAGRQ
Sbjct: 121 SWYIPLVVEDREETYDDPEEYYPYEDDDEELEEDYLGASSSLRIGNRRWGDNGYVRAGRQ 180

Query: 181 EARPVLRP---EFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 240
           EARP+ RP   EF+ ASSSREP  KDASKDKTGRRAKRALKREAADKAAAAKHQEHLAR 
Sbjct: 181 EARPIFRPSVPEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARL 240

[Close]

BLAST of Cp4.1LG16g08580 vs. ExPASy TrEMBL
Match: A0A0A0KK15 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 PE=4 SV=1)

HSP 1 Score: 415 bits (1067), Expect = 5.46e-145
Identity = 208/240 (86.67%), Postives = 223/240 (92.92%), Query Frame = 0


Query: 2   TSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALV 61
           TSSGIS++SAE+SDAVQ+   CDQ+EM KK+EIQGTGHGSHDGACAICLNKI+L ETALV
Sbjct: 35  TSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 94

Query: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121
           RGCEHAYC TCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 95  RGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 154

Query: 122 WYEPLIVKDREETYDDPEE--YYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGR 181
           WY+P I+++REETYDDPE+  YYPYED DEELE+AYLG SPSLRIGNRRWG NGYVRAGR
Sbjct: 155 WYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 214

Query: 182 QEARPVLRPEFSGASSSREPPTKDAS-KDKTGRRAKRALKREAADKAAAAKHQEHLARFG 238
           QEARPVLR EF+G SSSREP TK AS KDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 215 QEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 274

[Close]

BLAST of Cp4.1LG16g08580 vs. ExPASy TrEMBL
Match: A0A6J1K158 (uncharacterized protein LOC111490767 OS=Cucurbita maxima OX=3661 GN=LOC111490767 PE=4 SV=1)

HSP 1 Score: 412 bits (1060), Expect = 1.95e-144
Identity = 205/241 (85.06%), Postives = 219/241 (90.87%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           M SSGIS +SAELSDAVQ L+VC+Q+EM KK+EI GTGHGSHDG CAICLNKI+L ETAL
Sbjct: 1   MASSGISTESAELSDAVQILEVCNQIEMGKKVEIHGTGHGSHDGVCAICLNKIALQETAL 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           VRGCEHAYC TCILRWASY + PTCPQCKHPFEFLIVHRSLDGS+HD+MFEESVCLLLRA
Sbjct: 61  VRGCEHAYCATCILRWASYNKNPTCPQCKHPFEFLIVHRSLDGSVHDFMFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQ 180
           SWY PLIV+DREETY+DP+EYYPYED DEE EEAYLGAS SLRIGNRRWGDNGYVR GRQ
Sbjct: 121 SWYVPLIVEDREETYEDPDEYYPYEDDDEEFEEAYLGASSSLRIGNRRWGDNGYVRGGRQ 180

Query: 181 EARPVLR---PEFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 238
           EARPV+R   P  +GASSSREP  KDASKDKTGRRAKRALKREAADKAAAAKHQEHLARF
Sbjct: 181 EARPVIRSTVPVHAGASSSREPIKKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARF 240

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BLAST of Cp4.1LG16g08580 vs. TAIR 10
Match: AT5G19430.1 (RING/U-box superfamily protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.8e-67
Identity = 141/254 (55.51%), Postives = 177/254 (69.69%), Query Frame = 0


Query: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60
           M+S    +   ++ D +QDL + +Q +   + EI     G+H G CAICL++I L ETA+
Sbjct: 1   MSSVTEIVSEQQVIDGIQDLALQNQDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAM 60

Query: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120
           V+GCEH YC TCILRWAS  + PTCPQCKHPF+FL VHR+LDGSI D++FEESVCLLLRA
Sbjct: 61  VKGCEHTYCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRA 120

Query: 121 SWYEPLIVKDREE----TYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVR 180
           SW+ PL V ++       +DD +  Y YED+D++L+E YL  S SLRIGNRRWG NG+VR
Sbjct: 121 SWFVPLDVVEQASYSHGYHDDFDIPYDYEDEDDDLDEFYLHGS-SLRIGNRRWGGNGFVR 180

Query: 181 AGRQEARPVLRPEFSGA-------SSSREPPTKDA-SKDKTGRRAKRALKREAADKA--- 239
           +GRQEARPV R   SG+       SSS EP  K   + + TGRRAKRA+KREAA+KA   
Sbjct: 181 SGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEV 240

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BLAST of Cp4.1LG16g08580 vs. TAIR 10
Match: AT5G19430.2 (RING/U-box superfamily protein )

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-65
Identity = 134/222 (60.36%), Postives = 161/222 (72.52%), Query Frame = 0


Query: 33  EIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYCTTCILRWASYTQKPTCPQCKHPF 92
           EI     G+H G CAICL++I L ETA+V+GCEH YC TCILRWAS  + PTCPQCKHPF
Sbjct: 18  EIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHTYCVTCILRWASCKESPTCPQCKHPF 77

Query: 93  EFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDREE----TYDDPEEYYPYEDQD 152
           +FL VHR+LDGSI D++FEESVCLLLRASW+ PL V ++       +DD +  Y YED+D
Sbjct: 78  DFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDVVEQASYSHGYHDDFDIPYDYEDED 137

Query: 153 EELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRPEFSGA-------SSSREPPT 212
           ++L+E YL  S SLRIGNRRWG NG+VR+GRQEARPV R   SG+       SSS EP  
Sbjct: 138 DDLDEFYLHGS-SLRIGNRRWGGNGFVRSGRQEARPVQRYSGSGSSSSSSSGSSSSEPKD 197

Query: 213 KDA-SKDKTGRRAKRALKREAADKA----AAAKHQEHLARFG 239
           K   + + TGRRAKRA+KREAA+KA    AAAKH+ HL R G
Sbjct: 198 KQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHEAHLVRLG 238

[Close]

BLAST of Cp4.1LG16g08580 vs. TAIR 10
Match: AT5G12310.1 (RING/U-box superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 4.1e-64
Identity = 133/240 (55.42%), Postives = 160/240 (66.67%), Query Frame = 0


Query: 17  VQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALVRGCEHAYCTTCILRW 76
           V  L + DQ E            G+H G CAICL+ I L ETA+V+GCEHAYC TCILRW
Sbjct: 14  VDVLPLQDQDEKKTPQVFNELSFGNHGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRW 73

Query: 77  ASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYEPLIVKDR----- 136
           ASY +KPTCPQCK PF+FL VHR+LDGS+ D+MFEESVCLLLRASW++PL   +R     
Sbjct: 74  ASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMFEESVCLLLRASWFQPLEAVERVSDND 133

Query: 137 --EETYDDPEEYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGRQEARPVLRPE 196
                +D P EY   ++ D++L+E Y+  S SLR+GNRRWGDNG+VRAGRQEARPV    
Sbjct: 134 NFNYDFDIPPEYEEEDEDDDDLDEFYMQGS-SLRLGNRRWGDNGFVRAGRQEARPVQHKN 193

Query: 197 FSGASSSREP-------PTKDASKDKTGRRAKRALKREAADKA----AAAKHQEHLARFG 239
             G +S  EP       P +  S   TGRRAKRA+KREAA+KA    AAAKH+  L R G
Sbjct: 194 RGGQASGSEPASSSSCEPKEKTSSAITGRRAKRAMKREAANKAAEAVAAAKHEALLVRLG 252

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g08580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99590	4.2e-05	35.00	Protein SCAF11 OS=Homo sapiens OX=9606 GN=SCAF11 PE=1 SV=2	[more]

BLAST of Cp4.1LG16g08580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511780.1	1.96e-173	100.00	uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo]	[more]
XP_022943783.1	3.25e-172	99.58	uncharacterized protein LOC111448431 [Cucurbita moschata]	[more]
KAG6570419.1	8.74e-169	100.00	hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022987030.1	1.60e-165	97.08	uncharacterized protein LOC111484597 [Cucurbita maxima]	[more]
XP_022153003.1	2.28e-150	86.83	uncharacterized protein LOC111020607 [Momordica charantia]	[more]

BLAST of Cp4.1LG16g08580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXD4	1.57e-172	99.58	uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1JFP2	7.76e-166	97.08	uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597...	[more]
A0A6J1DGD3	1.10e-150	86.83	uncharacterized protein LOC111020607 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0KK15	5.46e-145	86.67	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 P...	[more]
A0A6J1K158	1.95e-144	85.06	uncharacterized protein LOC111490767 OS=Cucurbita maxima OX=3661 GN=LOC111490767...	[more]

BLAST of Cp4.1LG16g08580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19430.1	1.8e-67	55.51	RING/U-box superfamily protein	[more]
AT5G19430.2	1.6e-65	60.36	RING/U-box superfamily protein	[more]
AT5G12310.1	4.1e-64	55.42	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 46..88 e-value: 1.0E-5 score: 35.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 45..89 e-value: 8.3E-9 score: 35.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 46..89 score: 12.754832
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 27..112 e-value: 7.2E-12 score: 46.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..231
None	No IPR available	PANTHER	PTHR47361	RING/U-BOX SUPERFAMILY PROTEIN	coord: 11..239
None	No IPR available	PANTHER	PTHR47361:SF4	RING/U-BOX SUPERFAMILY PROTEIN	coord: 11..239
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 45..96
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 64..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g08580.1	Cp4.1LG16g08580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding