Cp4.1LG16g08510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g08510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	splicing factor 3B subunit 6-like protein
Location	Cp4.1LG16: 8132030 .. 8132302 (+)
RNA-Seq Expression	Cp4.1LG16g08510
Synteny	Cp4.1LG16g08510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGATATCTTCGGCAAGTACGGGGCGATCCGGCAGATTCGGATTGGGACGAACAAGGATACGAGAGGTACCGCCTTTGTTGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCACCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGCAAAAAGTTCGACCAGAAGAAGAAAGAGGATGAAATCGCCAGGATGCAAGAGAAGTACGGTGTTTCCACGAAAGATAAGTAA

mRNA sequence

ATGTATGATATCTTCGGCAAGTACGGGGCGATCCGGCAGATTCGGATTGGGACGAACAAGGATACGAGAGGTACCGCCTTTGTTGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCACCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGCAAAAAGTTCGACCAGAAGAAGAAAGAGGATGAAATCGCCAGGATGCAAGAGAAGTACGGTGTTTCCACGAAAGATAAGTAA

Coding sequence (CDS)

ATGTATGATATCTTCGGCAAGTACGGGGCGATCCGGCAGATTCGGATTGGGACGAACAAGGATACGAGAGGTACCGCCTTTGTTGTTTACGAAGATATCTATGATGCTAAGACGGCGGTGGATCACCTCTCCGGTTTCAACGTTGCGAATCGGTATCTGATCGTGTTGTACTACCAGCAGGCCAAGATGAGCAAAAAGTTCGACCAGAAGAAGAAAGAGGATGAAATCGCCAGGATGCAAGAGAAGTACGGTGTTTCCACGAAAGATAAGTAA

Protein sequence

MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDK

Homology

[Close]

BLAST of Cp4.1LG16g08510 vs. ExPASy Swiss-Prot
Match: Q9FMP4 (Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g12190 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.2e-39
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIG +K T+GTAFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ 
Sbjct: 35  MYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQH 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKK EDEI ++QEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKSEDEITKLQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. ExPASy Swiss-Prot
Match: Q9Y3B4 (Splicing factor 3B subunit 6 OS=Homo sapiens OX=9606 GN=SF3B6 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 57/87 (65.52%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYG IRQIR+G   +TRGTA+VVYEDI+DAK A DHLSGFNV NRYL+VLYY  
Sbjct: 35  MYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVST 88
            +  +K D KKKE+++  ++EKYG++T
Sbjct: 95  NRAFQKMDTKKKEEQLKLLKEKYGINT 121

[Close]

BLAST of Cp4.1LG16g08510 vs. ExPASy Swiss-Prot
Match: P59708 (Splicing factor 3B subunit 6 OS=Mus musculus OX=10090 GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 57/87 (65.52%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYG IRQIR+G   +TRGTA+VVYEDI+DAK A DHLSGFNV NRYL+VLYY  
Sbjct: 35  MYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVST 88
            +  +K D KKKE+++  ++EKYG++T
Sbjct: 95  NRAFQKMDTKKKEEQLKLLKEKYGINT 121

[Close]

BLAST of Cp4.1LG16g08510 vs. ExPASy Swiss-Prot
Match: Q9VRV7 (Splicing factor 3B subunit 6 OS=Drosophila melanogaster OX=7227 GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.9e-27
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGK+GAIRQIR+G   +TRGTAFVVYEDI+DAK A DHLSGFNV NRYL+VLYYQ 
Sbjct: 31  MYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQS 90

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKD 90
            K  K+ D  KK++E+  ++ KY + T +
Sbjct: 91  NKAFKRVDMDKKQEELNNIKAKYNLKTPE 119

[Close]

BLAST of Cp4.1LG16g08510 vs. ExPASy Swiss-Prot
Match: Q8ITY4 (Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans OX=6239 GN=C50D2.5 PE=3 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 6.1e-26
Identity = 52/85 (61.18%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MY+IFGK+GA+RQIR+G   +TRGTAFVVYEDI+DAKTA +HLSG+NV+NRYL+VLYYQ 
Sbjct: 35  MYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGYNVSNRYLVVLYYQA 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGV 86
            K  K+ D +K   ++  ++E+YG+
Sbjct: 95  TKAWKRMDTEKARTKLEDIKERYGI 119

[Close]

BLAST of Cp4.1LG16g08510 vs. NCBI nr
Match: XP_024639474.1 (splicing factor 3B subunit 6-like protein [Medicago truncatula] >ACJ83862.1 unknown [Medicago truncatula] >AET00189.2 Pre-mRNA branch site p14-like protein [Medicago truncatula] >AFK49453.1 unknown [Medicago truncatula] >RHN57553.1 putative nucleotide-binding alpha-beta plait domain-containing protein [Medicago truncatula])

HSP 1 Score: 177 bits (449), Expect = 2.03e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 90
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. NCBI nr
Match: XP_003519509.1 (splicing factor 3B subunit 6-like protein [Glycine max] >XP_007141508.1 hypothetical protein PHAVU_008G202000g [Phaseolus vulgaris] >XP_007141509.1 hypothetical protein PHAVU_008G202000g [Phaseolus vulgaris] >XP_014505153.1 splicing factor 3B subunit 6-like protein [Vigna radiata var. radiata] >XP_017430617.1 PREDICTED: splicing factor 3B subunit 6-like protein [Vigna angularis] >XP_020230779.1 splicing factor 3B subunit 6-like protein [Cajanus cajan] >XP_027941417.1 splicing factor 3B subunit 6-like protein [Vigna unguiculata] >XP_028219499.1 splicing factor 3B subunit 6-like protein [Glycine soja] >TKY57132.1 Splicing factor 3B subunit 6 protein [Spatholobus suberectus] >BAT80870.1 hypothetical protein VIGAN_03048500 [Vigna angularis var. angularis] >ESW13502.1 hypothetical protein PHAVU_008G202000g [Phaseolus vulgaris] >ESW13503.1 hypothetical protein PHAVU_008G202000g [Phaseolus vulgaris] >KAG2390990.1 Splicing factor 3B subunit 6-like protein [Vigna angularis])

HSP 1 Score: 177 bits (449), Expect = 2.03e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 90
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. NCBI nr
Match: XP_027331036.1 (splicing factor 3B subunit 6-like protein [Abrus precatorius])

HSP 1 Score: 177 bits (449), Expect = 2.03e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 90
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. NCBI nr
Match: XP_022152995.1 (splicing factor 3B subunit 6-like protein [Momordica charantia] >XP_022958187.1 splicing factor 3B subunit 6-like protein [Cucurbita moschata] >XP_022995172.1 splicing factor 3B subunit 6-like protein [Cucurbita maxima] >XP_023533539.1 splicing factor 3B subunit 6-like protein [Cucurbita pepo subsp. pepo] >XP_023533540.1 splicing factor 3B subunit 6-like protein [Cucurbita pepo subsp. pepo] >KAG6605944.1 Splicing factor 3B subunit 6-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035890.1 Splicing factor 3B subunit 6-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177 bits (449), Expect = 2.10e-55
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 36  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 95

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 90
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 96  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 125

[Close]

BLAST of Cp4.1LG16g08510 vs. NCBI nr
Match: XP_003545423.1 (splicing factor 3B subunit 6-like protein [Glycine max] >XP_028198457.1 splicing factor 3B subunit 6-like protein [Glycine soja] >KAG4953075.1 hypothetical protein JHK87_038669 [Glycine soja] >KRH14594.1 hypothetical protein GLYMA_14G035900v4 [Glycine max] >RZB67288.1 Splicing factor 3B subunit 6-like protein [Glycine soja])

HSP 1 Score: 177 bits (448), Expect = 2.89e-55
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAF+VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFIVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 90
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. ExPASy TrEMBL
Match: B7FGI3 (Pre-mRNA branch site p14-like protein OS=Medicago truncatula OX=3880 GN=MTR_5g089300 PE=2 SV=1)

HSP 1 Score: 177 bits (449), Expect = 9.84e-56
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 90
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. ExPASy TrEMBL
Match: V7B6G4 (RRM domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G202000g PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 9.84e-56
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 90
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. ExPASy TrEMBL
Match: I1JIW3 (RRM domain-containing protein OS=Glycine max OX=3847 GN=100802877 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 9.84e-56
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 90
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. ExPASy TrEMBL
Match: A0A1S3UGJ0 (splicing factor 3B subunit 6-like protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106765153 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 9.84e-56
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 90
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. ExPASy TrEMBL
Match: A0A151U1T1 (Pre-mRNA branch site p14-like protein OS=Cajanus cajan OX=3821 GN=KK1_005861 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 9.84e-56
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ
Sbjct: 35  MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 90
           AKMSKKFDQKKKEDEIARMQEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. TAIR 10
Match: AT5G12190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-40
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1   MYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 60
           MYDIFGKYGAIRQIRIG +K T+GTAFVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ 
Sbjct: 35  MYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQH 94

Query: 61  AKMSKKFDQKKKEDEIARMQEKYGVSTKDK 91
           AKMSKKFDQKK EDEI ++QEKYGVSTKDK
Sbjct: 95  AKMSKKFDQKKSEDEITKLQEKYGVSTKDK 124

[Close]

BLAST of Cp4.1LG16g08510 vs. TAIR 10
Match: AT2G14870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 73.6 bits (179), Expect = 9.4e-14
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 2  YDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHL 44
          YD+FG+Y  IRQ+RIG  K T+GTAFVVYEDIYDAK AVDHL
Sbjct: 37 YDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDAKKAVDHL 78

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g08510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMP4	2.2e-39	88.89	Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
Q9Y3B4	2.2e-28	65.52	Splicing factor 3B subunit 6 OS=Homo sapiens OX=9606 GN=SF3B6 PE=1 SV=1	[more]
P59708	2.2e-28	65.52	Splicing factor 3B subunit 6 OS=Mus musculus OX=10090 GN=Sf3b6 PE=1 SV=1	[more]
Q9VRV7	1.9e-27	64.04	Splicing factor 3B subunit 6 OS=Drosophila melanogaster OX=7227 GN=Sf3b6 PE=1 SV...	[more]
Q8ITY4	6.1e-26	61.18	Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans OX=6239 GN=C...	[more]

BLAST of Cp4.1LG16g08510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024639474.1	2.03e-55	100.00	splicing factor 3B subunit 6-like protein [Medicago truncatula] >ACJ83862.1 unkn...	[more]
XP_003519509.1	2.03e-55	100.00	splicing factor 3B subunit 6-like protein [Glycine max] >XP_007141508.1 hypothet...	[more]
XP_027331036.1	2.03e-55	100.00	splicing factor 3B subunit 6-like protein [Abrus precatorius]	[more]
XP_022152995.1	2.10e-55	100.00	splicing factor 3B subunit 6-like protein [Momordica charantia] >XP_022958187.1 ...	[more]
XP_003545423.1	2.89e-55	98.89	splicing factor 3B subunit 6-like protein [Glycine max] >XP_028198457.1 splicing...	[more]

BLAST of Cp4.1LG16g08510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B7FGI3	9.84e-56	100.00	Pre-mRNA branch site p14-like protein OS=Medicago truncatula OX=3880 GN=MTR_5g08...	[more]
V7B6G4	9.84e-56	100.00	RRM domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G202000g...	[more]
I1JIW3	9.84e-56	100.00	RRM domain-containing protein OS=Glycine max OX=3847 GN=100802877 PE=4 SV=1	[more]
A0A1S3UGJ0	9.84e-56	100.00	splicing factor 3B subunit 6-like protein OS=Vigna radiata var. radiata OX=3916 ...	[more]
A0A151U1T1	9.84e-56	100.00	Pre-mRNA branch site p14-like protein OS=Cajanus cajan OX=3821 GN=KK1_005861 PE=...	[more]

BLAST of Cp4.1LG16g08510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12190.1	1.5e-40	88.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G14870.1	9.4e-14	76.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..86 e-value: 7.1E-14 score: 54.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 2..53 e-value: 1.5E-10 score: 40.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..60 score: 12.014563
None	No IPR available	PANTHER	PTHR12785:SF7	SPLICING FACTOR 3B SUBUNIT 6	coord: 1..82
None	No IPR available	PANTHER	PTHR12785	SPLICING FACTOR 3B	coord: 1..82
IPR034150	SF3B6, RNA recognition motif	CDD	cd12241	RRM_SF3B14	coord: 1..59 e-value: 6.79048E-39 score: 122.34
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g08510.1	Cp4.1LG16g08510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005684	U2-type spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding