Cp4.1LG16g08320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g08320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionProtein YABBY 2
LocationCp4.1LG16: 7999125 .. 8000029 (-)
RNA-Seq ExpressionCp4.1LG16g08320
SyntenyCp4.1LG16g08320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGGATGTTGGCAGCACCAGAGAAGAAACAGCGTGTTCCTTCAGCATATAATAGGTTCATCAAGTAAGTTGATGGCTTAATTAGTTTGGGATTAGTGATCTTAATTAACCTTAATTAATGGGTTTAAGTGTTTTGTTTTGTAGAGAGGAAATCCAAAGGATTAAGGCGAACAATCCCGACATTAGCCACAGAGAAGCCTTTAGCACCGCCGCTAAAAATGTAAGTTCTCGAACCTCTTGCTCTTGCTCGAAACTAAGTTCCGAGTTTAAAGCTTTTGAGACATATATAGAAAGGTCTTTGATTAGACGTACATGACGATACGAGAAGAGTTGTAATTGAGATGAAATTGACGACGGTAATTCTAGTTTTAGCCGTAATTTTTTTTAATCTTTTTTAAGGAAATATAATTACTGGGTGATTAAGGATTAAAGTGGGTAATTAAATGATTAATCCATCTAATTAGTGGGTGGTTTGATTATGCAGTGGGCACATTATCCTCACATCCGTTGTGGGCAGAAGGTGGATGGAAACAAGCAAACAAAATAAGCTTGAATTTGACCGGAGATCATCACAGTCCATCCGATTAGCCAATGGGGTTCCGCCACCTGTTAATTCTAGAGATGATGATGACGTGTCAATAGATTAAATACTAAATAAAACATCTTTTTTTGTTTTTTTTTTTAATTAATGTGTATTAATTTAGATTTTATTATTTCCAACAAAAATTGAGGTTGACTAAGTCCTCCTGCCCTGACCCTATAGGAAAATAAATTACTTTGATAACCTCACCCCCCCCCCCCCCCCNCGTGTGATGTAATAACAGGTGAGATTAATGTTATTACATATTTATAATCTATTTATCAAGTCAGTTCTGTCTTGAAATTGATTGACTTTTAAGA

mRNA sequence

ATGGCACCAGAGAAGAAACAGCGTGTTCCTTCAGCATATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCGAACAATCCCGACATTAGCCACAGAGAAGCCTTTAGCACCGCCGCTAAAAATGTAAGTTCTCGAACCTCTTGCTCTTGCTCGAAACTAAGTTCCGAGTTTAAAGCTTTTGAGACATATATAGAAAGTGGGCACATTATCCTCACATCCGTTGTGGGCAGAAGGTGGATGGAAACAAGCAAACAAAATAAGCTTGAATTTGACCGGAGATCATCACAGTCCATCCGATTAGCCAATGGGGTTCCGCCACCTGTTAATTCTAGAGATGATGATGACGTGTCAATAGATTAAATACTAAATAAAACATCTTTTTTTGTTTTTTTTTTTAATTAATGTGTATTAATTTAGATTTTATTATTTCCAACAAAAATTGAGGTTGACTAAGTCCTCCTGCCCTGACCCTATAGGAAAATAAATTACTTTGATAACCTCACCCCCCCCCCCCCCCCNCGTGTGATGTAATAACAGGTGAGATTAATGTTATTACATATTTATAATCTATTTATCAAGTCAGTTCTGTCTTGAAATTGATTGACTTTTAAGA

Coding sequence (CDS)

ATGGCACCAGAGAAGAAACAGCGTGTTCCTTCAGCATATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCGAACAATCCCGACATTAGCCACAGAGAAGCCTTTAGCACCGCCGCTAAAAATGTAAGTTCTCGAACCTCTTGCTCTTGCTCGAAACTAAGTTCCGAGTTTAAAGCTTTTGAGACATATATAGAAAGTGGGCACATTATCCTCACATCCGTTGTGGGCAGAAGGTGGATGGAAACAAGCAAACAAAATAAGCTTGAATTTGACCGGAGATCATCACAGTCCATCCGATTAGCCAATGGGGTTCCGCCACCTGTTAATTCTAGAGATGATGATGACGTGTCAATAGATTAA

Protein sequence

MAPEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSEFKAFETYIESGHIILTSVVGRRWMETSKQNKLEFDRRSSQSIRLANGVPPPVNSRDDDDVSID
Homology
BLAST of Cp4.1LG16g08320 vs. ExPASy Swiss-Prot
Match: Q10FZ7 (Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 44
           PEK+QRVPSAYNRFIKEEI+RIKANNPDISHREAFSTAAKN
Sbjct: 110 PEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKN 150

BLAST of Cp4.1LG16g08320 vs. ExPASy Swiss-Prot
Match: Q8GW46 (Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 44
           PEK+QRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKN
Sbjct: 102 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 142

BLAST of Cp4.1LG16g08320 vs. ExPASy Swiss-Prot
Match: Q2QM17 (Protein YABBY 6 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB6 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 44
           PEK+QRVPSAYNRFIKEEI+RIKANNPDISHREAFSTAAKN
Sbjct: 126 PEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKN 166

BLAST of Cp4.1LG16g08320 vs. ExPASy Swiss-Prot
Match: O22152 (Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 44
           PEK+QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKN
Sbjct: 138 PEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 178

BLAST of Cp4.1LG16g08320 vs. ExPASy Swiss-Prot
Match: Q9XFB1 (Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 44
           PEK+QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKN
Sbjct: 150 PEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 190

BLAST of Cp4.1LG16g08320 vs. NCBI nr
Match: XP_022986993.1 (putative axial regulator YABBY 2 isoform X4 [Cucurbita maxima])

HSP 1 Score: 105 bits (262), Expect = 4.58e-26
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSE 58
           PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSC+KL SE
Sbjct: 93  PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCTKLRSE 148

BLAST of Cp4.1LG16g08320 vs. NCBI nr
Match: XP_022986989.1 (putative axial regulator YABBY 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 105 bits (262), Expect = 8.46e-26
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSE 58
           PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSC+KL SE
Sbjct: 116 PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCTKLRSE 171

BLAST of Cp4.1LG16g08320 vs. NCBI nr
Match: XP_022986992.1 (putative axial regulator YABBY 2 isoform X3 [Cucurbita maxima])

HSP 1 Score: 101 bits (252), Expect = 2.57e-24
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 4   EKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSE 58
           +KKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSC+KL SE
Sbjct: 115 QKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCTKLRSE 169

BLAST of Cp4.1LG16g08320 vs. NCBI nr
Match: PPR92799.1 (hypothetical protein GOBAR_AA27871 [Gossypium barbadense])

HSP 1 Score: 88.2 bits (217), Expect = 4.86e-19
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 2   APEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSEFKA 61
           APEK+QRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNV   T    +KLS ++ A
Sbjct: 116 APEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVRKCTGMFIAKLSFDYLA 175

BLAST of Cp4.1LG16g08320 vs. NCBI nr
Match: XP_016579963.1 (PREDICTED: axial regulator YABBY 5-like isoform X4 [Capsicum annuum])

HSP 1 Score: 85.5 bits (210), Expect = 2.77e-18
Identity = 49/88 (55.68%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSEFKAF 62
           PEK+QRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKN+ +             ++ 
Sbjct: 64  PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNMGND------------RSI 123

Query: 63  ETYIESGHIILTSVVGRRWMETSKQNKL 90
             +  SGH  LT  +   W  T K N L
Sbjct: 124 TLFWCSGHTSLTFTLDSCWRATIKPNLL 139

BLAST of Cp4.1LG16g08320 vs. ExPASy TrEMBL
Match: A0A6J1JI62 (putative axial regulator YABBY 2 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111484576 PE=3 SV=1)

HSP 1 Score: 105 bits (262), Expect = 2.22e-26
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSE 58
           PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSC+KL SE
Sbjct: 93  PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCTKLRSE 148

BLAST of Cp4.1LG16g08320 vs. ExPASy TrEMBL
Match: A0A6J1JHL4 (putative axial regulator YABBY 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484576 PE=3 SV=1)

HSP 1 Score: 105 bits (262), Expect = 4.09e-26
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSE 58
           PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSC+KL SE
Sbjct: 116 PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCTKLRSE 171

BLAST of Cp4.1LG16g08320 vs. ExPASy TrEMBL
Match: A0A6J1J940 (putative axial regulator YABBY 2 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111484576 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 1.25e-24
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 4   EKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSE 58
           +KKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSC+KL SE
Sbjct: 115 QKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCTKLRSE 169

BLAST of Cp4.1LG16g08320 vs. ExPASy TrEMBL
Match: A0A2P5WNX6 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA27871 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.35e-19
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 2   APEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSEFKA 61
           APEK+QRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNV   T    +KLS ++ A
Sbjct: 116 APEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVRKCTGMFIAKLSFDYLA 175

BLAST of Cp4.1LG16g08320 vs. ExPASy TrEMBL
Match: A0A1U8HFM6 (axial regulator YABBY 5-like isoform X4 OS=Capsicum annuum OX=4072 GN=LOC107877768 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.34e-18
Identity = 49/88 (55.68%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNVSSRTSCSCSKLSSEFKAF 62
           PEK+QRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKN+ +             ++ 
Sbjct: 64  PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNMGND------------RSI 123

Query: 63  ETYIESGHIILTSVVGRRWMETSKQNKL 90
             +  SGH  LT  +   W  T K N L
Sbjct: 124 TLFWCSGHTSLTFTLDSCWRATIKPNLL 139

BLAST of Cp4.1LG16g08320 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-15
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 44
           PEK+QRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKN
Sbjct: 102 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 142

BLAST of Cp4.1LG16g08320 vs. TAIR 10
Match: AT2G26580.2 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-15
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 44
           PEK+QRVPSAYN+FIKEEIQRIKANNPDISHREAFSTAAKN
Sbjct: 102 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 142

BLAST of Cp4.1LG16g08320 vs. TAIR 10
Match: AT2G45190.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 44
           PEK+QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKN
Sbjct: 138 PEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 178

BLAST of Cp4.1LG16g08320 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 44
           PEK+QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKN
Sbjct: 150 PEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 190

BLAST of Cp4.1LG16g08320 vs. TAIR 10
Match: AT4G00180.2 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 3   PEKKQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKN 44
           PEK+QRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKN
Sbjct: 119 PEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q10FZ72.5e-1495.12Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1[more]
Q8GW462.5e-1495.12Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1[more]
Q2QM172.5e-1495.12Protein YABBY 6 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB6 PE=2 SV=1[more]
O221521.6e-1392.68Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1[more]
Q9XFB11.6e-1392.68Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_022986993.14.58e-2696.43putative axial regulator YABBY 2 isoform X4 [Cucurbita maxima][more]
XP_022986989.18.46e-2696.43putative axial regulator YABBY 2 isoform X1 [Cucurbita maxima][more]
XP_022986992.12.57e-2494.55putative axial regulator YABBY 2 isoform X3 [Cucurbita maxima][more]
PPR92799.14.86e-1978.33hypothetical protein GOBAR_AA27871 [Gossypium barbadense][more]
XP_016579963.12.77e-1855.68PREDICTED: axial regulator YABBY 5-like isoform X4 [Capsicum annuum][more]
Match NameE-valueIdentityDescription
A0A6J1JI622.22e-2696.43putative axial regulator YABBY 2 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1JHL44.09e-2696.43putative axial regulator YABBY 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1J9401.25e-2494.55putative axial regulator YABBY 2 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A2P5WNX62.35e-1978.33Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA27871 PE=3 SV... [more]
A0A1U8HFM61.34e-1855.68axial regulator YABBY 5-like isoform X4 OS=Capsicum annuum OX=4072 GN=LOC1078777... [more]
Match NameE-valueIdentityDescription
AT2G26580.11.8e-1595.12plant-specific transcription factor YABBY family protein [more]
AT2G26580.21.8e-1595.12plant-specific transcription factor YABBY family protein [more]
AT2G45190.11.1e-1492.68Plant-specific transcription factor YABBY family protein [more]
AT4G00180.11.1e-1492.68Plant-specific transcription factor YABBY family protein [more]
AT4G00180.21.1e-1492.68Plant-specific transcription factor YABBY family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006780YABBY proteinPFAMPF04690YABBYcoord: 2..44
e-value: 3.4E-26
score: 92.8
IPR006780YABBY proteinPANTHERPTHR31675PROTEIN YABBY 6-RELATEDcoord: 3..46
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 1..102
e-value: 6.3E-8
score: 35.0
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 3..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..121
NoneNo IPR availablePANTHERPTHR31675:SF30AXIAL REGULATOR YABBY 2-RELATEDcoord: 3..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g08320.1Cp4.1LG16g08320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development