Cp4.1LG16g07870 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g07870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG16: 7750778 .. 7754591 (+)
RNA-Seq Expression	Cp4.1LG16g07870
Synteny	Cp4.1LG16g07870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAACAGTATAGTTTTCCTTGGCTATGCCTGCTGATTTTGCTGCCATTTGAGCTTTAAGGAAGTTCCTGCATGCCATAATTACATGCCATTTTCCTGTTTCAGCTAGAGCCTTGGCCGTGGCTAGACCCAGTCCCGAGGAAGCTCCTGTAATGATAACATTTCCTTTCCTCAAGGTCTTGTTTCCTTCCAAAGGCGCCTGGTTGATTTCTGAAATTGTTGCAGTCTGGGCTCTAATGGCTCCATCAGGTAATCTTCCTTGCTACATGTTCATGGATAGATAATTTATATTGCAAACATTTCCACTACCAAATTCTAACCAGAAAATTGAAAAATGGGCATATTTACCTTATTTCTCAACCTGAGAGATTTGGATTTAACTTCAAAATGTTCTGAAAATGGAAGTCCTGAAAGTCCAGTATTCTTCAGAACAACAGTACCAGCTGCATACACCTCTTTGTGGATGGAAATCGTGGGAGAAAAGGAGGCTGCTTGTAGAGCCATGGCAGGCAAAGATTGCTCCTGCTGCAAAGATGGTGTCTGTTTTCTTATCGAGATTGCTCCTGCTGCTTGCCACGTTCGCCTCCCTGGTCCAATCAGGTTCGTCACTGGAATCCCCTTTAGCTATACATCGTCTAGACCATTCCAGTAAGTATGGGCTATTTATGTGGAGGTCCAGCTAGCTAAGGTTGGGTCCAACCTGTGCATGTTGGGCCTATAATGGAATGGGCAACAATATTACCTTATCTTCCACCATAGTAACCTTAAAGAATCACAACCTCCACTCTCTTATAATATCGTCTATTTTAAGCATAAACGCTCACAGTTTTGATTTTGATTTTTCTAAAAGGTCTCATACCAATTAAAAAGTATTTCTTGCTCATAAACTCAGGAACATTCTCTTAATTAGCCAACGTGGGACTTTCTCCCAACTATCCTATCATTATAGAAAGGATTATAGAAAGGAAAAATGGAGTGCGGTAATGATATTAAATAATTGTGTGTGGTGCACGGTTAAAATCACTATTGGCTTTGGTTAGAAGGTAATTAACTGGGATTAGAAATGATGGAGGTTAATTTATCTACGTTATATATGAAATGTGGGTAACACTTTCGGTCCTTTATTTGGAGCTGCACACTGCATTCATTATTATCACTGCCGATCTCTCATGTGTTTTGGTAATCAGCCAGGACGATTCTTTTCTTATCTTGGCGTCGCAGATAAGAAATGAAATGGACATCACTTTACCCTCTAGGCCGGCTGCTGGGGTCCATTCTTTCTCGTAACTATTCTTACTCTCTCTCTCTGTTTTTCTTTTGCTTTGCTTTCTTGTTAATTTGGAATTTGGGAGATTATTGTTGTAACCCCGGGATCGAAACCTAGCTTTGATACCATTTATAACAGCCTAAGTTCACCACAAATATTGTTCGCTTTGACCCGTTACGTATCGCTGTCGGCCTCTCGGTTTTAAAAGACGCATTTTAAAACCGCGAGGCTAAGGACGATACGTAACGAGCCAAAACAGATAATATCTACTCGCTATTACAATTGTTTTTGTTATTTATCTTTTTCTTTCTTTCTTTTTGTTCTTACCTTGTTATTGTTTCTACCCATTTCTCATATAATATACAAGAAATTTCCCTTCTTGGATTACTTTTTTCTCCACTAAAGTTTGGTCATATTATGTCATCCATGTTCATAATCAGGTAATTGTGATATTCACCAACAGTGAGGACTAAATTGCAGGATAATGAAACGTAATTTTGAAGGGTTGCTTAATTTAAGTATAATTTTGAAGCTTTTTGCTGTGCTTGGACATTATCTTAGTTTTAGTTTTTAGTTCTGGTTGCATTTGAACTTATCATATTCGCTGTTGATGGAGCAAAATCTGTGTACATAGAAAGAAATGATATATATATATAGTGTAATAATTATTATATTACAGTATGGTGGGAAGCTAAAAGTTGGTGTCAAATATGAAAATAGAATGTGCTTCCATGCCATCCTCTTGGCCGAAAAACAGAGCCCCTGATGGATGATGGACCCAATGAAAGAGGAGATCACCAAACTGTCTCCTGCTCGCTGGCCCGTGCTGAAATTAAACAGAGCAATACAGTGGAAAACAGACCACAGAACATAAAGCAAAAGCCAAAAGATCAATGGAACAAAACAAAAAAAAAAAAAAAAAATTCTAAACCAGAACATGCTTGTGGGTGATAGTGATAGTCTCTCTAGAATCTCGTGCCTGATACTAACAATAGGAACCAAGAAAAAGAACTGGCCCACGAGTGCACTGCCTGCACTGATTTGATGCCCTCCCCACAAGATTTGGCGCAAAAGGCAGCCTTTTTGGTTTAATCTTCATCCTTGTGAAAGAAGGGCTTCATGGGGCAGGATGAGGAAGAAGGAGAAACTGGGGGTCTCTGAAGATCAGAGCCATATGAAGGCTGTGGCTGCAGCAGCAGATTATTGGTGGTGTCCAAGTCGTCCCACACAGGGCTACCAGGGCCCCAACCGGCTGGCATCGCGTTTAACCAAGCCTCTGCTATTTCTCTCCAAACCATTTCCTGTGAGTTTGAAACACCCTCTGCCTCTTGTATGTTGTCCTCTGTCACAGCCTCATTATTGGACTCTAATTCTATGTCATTGTCTAGATCCTGTTGAGGAGCCTGCGAGGCTTCTTCTTCTTCTTCTTCTTCTTTATTATCTTTATTTAGAAACAGCTCTGGAAAATTAAGCCTTGCATTCGCTCCTCTCAACTTGAAAGCCTCACGATCGTAGGCCAAGGCAGCGTCTTCAGCAGTGTCGAATGTGCCAAGCCAGAGACGATTCCTGTTTCGAGGAAGACGAATCTCAGCTACCCATTTCCCCCAATGTCTCTGCCTCACTCCTCTGTATAGCTTCGTGGTATTTAAAGCCCGCACTTGAGGTCTAATCCCTGCTGCCCTTGTGTTTAAATTAAGAGACTCATTCCAGTGCTGAAGAAATTGCTGATGTTGTTGTTGTTGCTGTTGAAACGATGCAAACTCTCCCATGAAGTAGGGTGGATAGCCAAAGCCAAATCCATGTTGGGTCGAAGCGATCGGCGTCAATTGCGGCCGGACTGACGGGCGGTGATGAACCACAGGCGCTACAGGCGCTACAGGCTCTACAAGCTCTGTTTTGGATTGATGAGGGAATTGGGATGGTTGGAAAGGAAAAGGAAAGAGAGGTGTTGCAGAAGAAGAGGAAGCGTGAGAAACAGAGGAGGGTGGATTGAAGAAAGGAAATGAAGGATGAGAAATTGGGTGATGATTTTGAGGGTCAGGGATGTTGTTAAAAGGCCGCCGCAGCTTCCCCTGTCGCCGGCGAACATGATCATGATCGGTATCTTTACCTTCATCCATAGCTTGAGTTGGATTGGAGAGTCCACGTGGGGTTGGGGGGATTGATCGAGAGATGAAGAAGAAAGTGAAGAGAGGATGGGCTTATAAATAGGAGGAGAAGAGGAAGAGGGTTTTTTGAATCGGAACTCTCTGCCTTTGAACCCATGGCCATGCTTGGCCCCACGAATCCAACCAGCATCTTCCATGATCTCTCTCTCTCTCTCTCTGGTTTCTTTAGCTTAAACTTCAAACCATGGCACCATTAAAAGGAAAAAGTACCGAGAGTTTGAGCCAATAATAAACACTTACTTTGAATTGTTGTTCTTAGTGTCTTCCACGTTTTGGAAATATTTGCTACCATTTTTGGAATATACATCTTCCTTCTGCTCTGCTCCCCACTGTGGACCGACTTTTCAGTTCTCGAATATACGAAAACGTGTCATTCA

mRNA sequence

ATGCATAACACTAGAGCCTTGGCCGTGGCTAGACCCAGTCCCGAGGAAGCTCCTGTAATGATAACATTTCCTTTCCTCAAGGTCTTGTTTCCTTCCAAAGGCGCCTGGTTGATTTCTGAAATTGTTGCAGTCTGGGCTCTAATGGCTCCATCAGATTTGGATTTAACTTCAAAATGTTCTGAAAATGGAAGTCCTGAAAGTCCAGTATTCTTCAGAACAACAGTACCAGCTGCATACACCTCTTTGTGGATGGAAATCGTGGGAGAAAAGGAGGCTGCTTGTAGAGCCATGGCAGGCAAAGATTGCTCCTGCTGCAAAGATGGTGTCTGTTTTCTTATCGAGATTGCTCCTGCTGCTTGCCACGTTCGCCTCCCTGGTCCAATCAGGTTCGTCACTGGAATCCCCTTTAGCTATACATCGTCTAGACCATTCCACCAGGACGATTCTTTTCTTATCTTGGCGTCGCAGATAAGAAATGAAATGGACATCACTTTACCCTCTAGGCCGGCTGCTGGGGTCCATTCTTTCTCGTAACTATTCTTACTCTCTCTCTCTGTTTTTCTTTTGCTTTGCTTTCTTGTTAATTTGGAATTTGGGAGATTATTGTTGTAACCCCGGGATCGAAACCTAGCTTTGATACCATTTATAACAGCCTAAGTTCACCACAAATATTGTTCGCTTTGACCCGTTACGTATCGCTGTCGGCCTCTCGGTTTTAAAAGACGCATTTTAAAACCGCGAGGCTAAGGACGATACGTAACGAGCCAAAACAGATAATATCTACTCGCTATTACAATTGTTTTTGTTATTTATCTTTTTCTTTCTTTCTTTTTGTTCTTACCTTGTTATTGTTTCTACCCATTTCTCATATAATATACAAGAAATTTCCCTTCTTGGATTACTTTTTTCTCCACTAAAGTTTGGTCATATTATGTCATCCATGTTCATAATCAGGTAATTGTGATATTCACCAACAGTGAGGACTAAATTGCAGGATAATGAAACGTAATTTTGAAGGGTTGCTTAATTTAAGTATAATTTTGAAGCTTTTTGCTGTGCTTGGACATTATCTTAGTTTTAGTTTTTAGTTCTGGTTGCATTTGAACTTATCATATTCGCTGTTGATGGAGCAAAATCTGTGTACATAGAAAGAAATGATATATATATATAGTGTAATAATTATTATATTACAGTATGGTGGGAAGCTAAAAGTTGGTGTCAAATATGAAAATAGAATGTGCTTCCATGCCATCCTCTTGGCCGAAAAACAGAGCCCCTGATGGATGATGGACCCAATGAAAGAGGAGATCACCAAACTGTCTCCTGCTCGCTGGCCCGTGCTGAAATTAAACAGAGCAATACAGTGGAAAACAGACCACAGAACATAAAGCAAAAGCCAAAAGATCAATGGAACAAAACAAAAAAAAAAAAAAAAAATTCTAAACCAGAACATGCTTGTGGGTGATAGTGATAGTCTCTCTAGAATCTCGTGCCTGATACTAACAATAGGAACCAAGAAAAAGAACTGGCCCACGAGTGCACTGCCTGCACTGATTTGATGCCCTCCCCACAAGATTTGGCGCAAAAGGCAGCCTTTTTGGTTTAATCTTCATCCTTGTGAAAGAAGGGCTTCATGGGGCAGGATGAGGAAGAAGGAGAAACTGGGGGTCTCTGAAGATCAGAGCCATATGAAGGCTGTGGCTGCAGCAGCAGATTATTGGTGGTGTCCAAGTCGTCCCACACAGGGCTACCAGGGCCCCAACCGGCTGGCATCGCGTTTAACCAAGCCTCTGCTATTTCTCTCCAAACCATTTCCTGTGAGTTTGAAACACCCTCTGCCTCTTGTATGTTGTCCTCTGTCACAGCCTCATTATTGGACTCTAATTCTATGTCATTGTCTAGATCCTGTTGAGGAGCCTGCGAGGCTTCTTCTTCTTCTTCTTCTTCTTTATTATCTTTATTTAGAAACAGCTCTGGAAAATTAAGCCTTGCATTCGCTCCTCTCAACTTGAAAGCCTCACGATCGTAGGCCAAGGCAGCGTCTTCAGCAGTGTCGAATGTGCCAAGCCAGAGACGATTCCTGTTTCGAGGAAGACGAATCTCAGCTACCCATTTCCCCCAATGTCTCTGCCTCACTCCTCTGTATAGCTTCGTGGTATTTAAAGCCCGCACTTGAGGTCTAATCCCTGCTGCCCTTGTGTTTAAATTAAGAGACTCATTCCAGTGCTGAAGAAATTGCTGATGTTGTTGTTGTTGCTGTTGAAACGATGCAAACTCTCCCATGAAGTAGGGTGGATAGCCAAAGCCAAATCCATGTTGGGTCGAAGCGATCGGCGTCAATTGCGGCCGGACTGACGGGCGGTGATGAACCACAGGCGCTACAGGCGCTACAGGCTCTACAAGCTCTGTTTTGGATTGATGAGGGAATTGGGATGGTTGGAAAGGAAAAGGAAAGAGAGGTGTTGCAGAAGAAGAGGAAGCGTGAGAAACAGAGGAGGGTGGATTGAAGAAAGGAAATGAAGGATGAGAAATTGGGTGATGATTTTGAGGGTCAGGGATGTTGTTAAAAGGCCGCCGCAGCTTCCCCTGTCGCCGGCGAACATGATCATGATCGGTATCTTTACCTTCATCCATAGCTTGAGTTGGATTGGAGAGTCCACGTGGGGTTGGGGGGATTGATCGAGAGATGAAGAAGAAAGTGAAGAGAGGATGGGCTTATAAATAGGAGGAGAAGAGGAAGAGGGTTTTTTGAATCGGAACTCTCTGCCTTTGAACCCATGGCCATGCTTGGCCCCACGAATCCAACCAGCATCTTCCATGATCTCTCTCTCTCTCTCTCTGGTTTCTTTAGCTTAAACTTCAAACCATGGCACCATTAAAAGGAAAAAGTACCGAGAGTTTGAGCCAATAATAAACACTTACTTTGAATTGTTGTTCTTAGTGTCTTCCACGTTTTGGAAATATTTGCTACCATTTTTGGAATATACATCTTCCTTCTGCTCTGCTCCCCACTGTGGACCGACTTTTCAGTTCTCGAATATACGAAAACGTGTCATTCA

Coding sequence (CDS)

ATGCATAACACTAGAGCCTTGGCCGTGGCTAGACCCAGTCCCGAGGAAGCTCCTGTAATGATAACATTTCCTTTCCTCAAGGTCTTGTTTCCTTCCAAAGGCGCCTGGTTGATTTCTGAAATTGTTGCAGTCTGGGCTCTAATGGCTCCATCAGATTTGGATTTAACTTCAAAATGTTCTGAAAATGGAAGTCCTGAAAGTCCAGTATTCTTCAGAACAACAGTACCAGCTGCATACACCTCTTTGTGGATGGAAATCGTGGGAGAAAAGGAGGCTGCTTGTAGAGCCATGGCAGGCAAAGATTGCTCCTGCTGCAAAGATGGTGTCTGTTTTCTTATCGAGATTGCTCCTGCTGCTTGCCACGTTCGCCTCCCTGGTCCAATCAGGTTCGTCACTGGAATCCCCTTTAGCTATACATCGTCTAGACCATTCCACCAGGACGATTCTTTTCTTATCTTGGCGTCGCAGATAAGAAATGAAATGGACATCACTTTACCCTCTAGGCCGGCTGCTGGGGTCCATTCTTTCTCGTAA

Protein sequence

MHNTRALAVARPSPEEAPVMITFPFLKVLFPSKGAWLISEIVAVWALMAPSDLDLTSKCSENGSPESPVFFRTTVPAAYTSLWMEIVGEKEAACRAMAGKDCSCCKDGVCFLIEIAPAACHVRLPGPIRFVTGIPFSYTSSRPFHQDDSFLILASQIRNEMDITLPSRPAAGVHSFS

Homology

[Close]

BLAST of Cp4.1LG16g07870 vs. ExPASy TrEMBL
Match: A0A7C9D475 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.79e-06
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 5  RALAVARPSPEEAPVMITFPFLKVLFPSKGAWLIS-EIVAVWALM 48
          RALAVARPSP++APV+ T PFL V F S  A LI  ++V VWAL+
Sbjct: 28 RALAVARPSPDDAPVITTVPFLSVFFSSGVARLIDGDVVTVWALI 72

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g07870 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g07870 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g07870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7C9D475	7.79e-06	62.22	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]

BLAST of Cp4.1LG16g07870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g07870.1	Cp4.1LG16g07870.1	mRNA