Cp4.1LG16g07470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g07470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ethylene-responsive transcription factor 3-like
Location	Cp4.1LG16: 7504149 .. 7504355 (-)
RNA-Seq Expression	Cp4.1LG16g07470
Synteny	Cp4.1LG16g07470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGCCGGAGGCCGGTGCAGCCAGTTTCGCCGGACGACTGCCATAGCGACTGTGATTCGTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTGCTCGCTTCTTTCCGTCGAGCCTTGCCCTTCGATCTTAACTTACCGCCTCCCATGGACGTCGTGGATTTAACAGGTGACGATCTTCAAGCTACTGCTTTATGCCTCTGA

mRNA sequence

ATGGTTCGCCGGAGGCCGGTGCAGCCAGTTTCGCCGGACGACTGCCATAGCGACTGTGATTCGTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTGCTCGCTTCTTTCCGTCGAGCCTTGCCCTTCGATCTTAACTTACCGCCTCCCATGGACGTCGTGGATTTAACAGGTGACGATCTTCAAGCTACTGCTTTATGCCTCTGA

Coding sequence (CDS)

ATGGTTCGCCGGAGGCCGGTGCAGCCAGTTTCGCCGGACGACTGCCATAGCGACTGTGATTCGTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTGCTCGCTTCTTTCCGTCGAGCCTTGCCCTTCGATCTTAACTTACCGCCTCCCATGGACGTCGTGGATTTAACAGGTGACGATCTTCAAGCTACTGCTTTATGCCTCTGA

Protein sequence

MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL

Homology

[Close]

BLAST of Cp4.1LG16g07470 vs. ExPASy Swiss-Prot
Match: Q9SXS8 (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.0e-14
Identity = 42/70 (60.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 9   PVSPDDCHSDCDSSSSVVD----------DDEVCVLASFRRALPFDLNLPPPMDVVDLTG 68
           PV PDDCHSDCDSSSSVVD          D++    +SFR+ L FDLNLPPPMD  D   
Sbjct: 158 PVVPDDCHSDCDSSSSVVDHGDCEKENDNDNDNIASSSFRKPLLFDLNLPPPMD--DAGA 217

[Close]

BLAST of Cp4.1LG16g07470 vs. ExPASy Swiss-Prot
Match: O80339 (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ERF3 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-10
Identity = 38/64 (59.38%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 9   PVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALP--FDLNLPPPMDVVDL--TGDDLQAT 68
           PV P+DCHSDCDSSSSV+DDD+    +S RR  P  FDLN  PP+D VDL    DDL  T
Sbjct: 163 PVVPEDCHSDCDSSSSVIDDDDDIASSSRRRNPPFQFDLNF-PPLDCVDLFNGADDLHCT 222

[Close]

BLAST of Cp4.1LG16g07470 vs. ExPASy Swiss-Prot
Match: Q9LDE4 (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=ERF7 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-10
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 2   VRRRP-VQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALP--FDLNLPPPMDVVDLTG 61
           ++R P   PV+P+DCHSDCDSSSSV+DD +    +S RR  P  FDLN  PP+D VDL  
Sbjct: 173 IKRYPRTPPVAPEDCHSDCDSSSSVIDDGDDIASSSSRRKTPFQFDLNF-PPLDGVDLFA 232

Query: 62  ---DDLQATALCL 69
              DDL  T L L
Sbjct: 233 GGIDDLHCTDLRL 244

[Close]

BLAST of Cp4.1LG16g07470 vs. NCBI nr
Match: XP_022149613.1 (ethylene-responsive transcription factor 3 [Momordica charantia])

HSP 1 Score: 144 bits (362), Expect = 2.40e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 60
           MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD
Sbjct: 151 MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 210

Query: 61  LQATALCL 68
           LQATALCL
Sbjct: 211 LQATALCL 218

[Close]

BLAST of Cp4.1LG16g07470 vs. NCBI nr
Match: XP_038902603.1 (ethylene-responsive transcription factor 3-like [Benincasa hispida])

HSP 1 Score: 144 bits (362), Expect = 2.47e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 60
           MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD
Sbjct: 152 MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 211

Query: 61  LQATALCL 68
           LQATALCL
Sbjct: 212 LQATALCL 219

[Close]

BLAST of Cp4.1LG16g07470 vs. NCBI nr
Match: XP_004143195.1 (ethylene-responsive transcription factor 3 [Cucumis sativus] >XP_008456400.1 PREDICTED: ethylene-responsive transcription factor 3-like [Cucumis melo] >KAA0054487.1 ethylene-responsive transcription factor 3-like [Cucumis melo var. makuwa] >KGN47005.1 hypothetical protein Csa_020596 [Cucumis sativus] >TYK14552.1 ethylene-responsive transcription factor 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 2.47e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 60
           MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD
Sbjct: 152 MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 211

Query: 61  LQATALCL 68
           LQATALCL
Sbjct: 212 LQATALCL 219

[Close]

BLAST of Cp4.1LG16g07470 vs. NCBI nr
Match: XP_022944504.1 (ethylene-responsive transcription factor 3-like [Cucurbita moschata] >XP_022986032.1 ethylene-responsive transcription factor 3-like [Cucurbita maxima] >KAG6570551.1 Ethylene-responsive transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010409.1 Ethylene-responsive transcription factor 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144 bits (362), Expect = 2.47e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 60
           MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD
Sbjct: 152 MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 211

Query: 61  LQATALCL 68
           LQATALCL
Sbjct: 212 LQATALCL 219

[Close]

BLAST of Cp4.1LG16g07470 vs. NCBI nr
Match: XP_022947976.1 (ethylene-responsive transcription factor 3-like [Cucurbita moschata] >XP_022970780.1 ethylene-responsive transcription factor 3-like [Cucurbita maxima] >XP_022970781.1 ethylene-responsive transcription factor 3-like [Cucurbita maxima] >XP_023534086.1 ethylene-responsive transcription factor 3-like [Cucurbita pepo subsp. pepo] >KAG7034877.1 Ethylene-responsive transcription factor 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141 bits (355), Expect = 2.75e-40
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1   MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 60
           MV RRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD
Sbjct: 151 MVPRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 210

Query: 61  LQATALCL 68
           LQATALCL
Sbjct: 211 LQATALCL 218

[Close]

BLAST of Cp4.1LG16g07470 vs. ExPASy TrEMBL
Match: A0A6J1D794 (ethylene-responsive transcription factor 3 OS=Momordica charantia OX=3673 GN=LOC111017997 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.16e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 60
           MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD
Sbjct: 151 MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 210

Query: 61  LQATALCL 68
           LQATALCL
Sbjct: 211 LQATALCL 218

[Close]

BLAST of Cp4.1LG16g07470 vs. ExPASy TrEMBL
Match: A0A5A7UIU5 (Ethylene-responsive transcription factor 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00350 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.20e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 60
           MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD
Sbjct: 152 MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 211

Query: 61  LQATALCL 68
           LQATALCL
Sbjct: 212 LQATALCL 219

[Close]

BLAST of Cp4.1LG16g07470 vs. ExPASy TrEMBL
Match: A0A6J1J6H0 (ethylene-responsive transcription factor 3-like OS=Cucurbita maxima OX=3661 GN=LOC111483890 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.20e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 60
           MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD
Sbjct: 152 MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 211

Query: 61  LQATALCL 68
           LQATALCL
Sbjct: 212 LQATALCL 219

[Close]

BLAST of Cp4.1LG16g07470 vs. ExPASy TrEMBL
Match: A0A0A0KBH0 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G167230 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.20e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 60
           MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD
Sbjct: 152 MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 211

Query: 61  LQATALCL 68
           LQATALCL
Sbjct: 212 LQATALCL 219

[Close]

BLAST of Cp4.1LG16g07470 vs. ExPASy TrEMBL
Match: A0A6J1FWT6 (ethylene-responsive transcription factor 3-like OS=Cucurbita moschata OX=3662 GN=LOC111448942 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.20e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 60
           MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD
Sbjct: 152 MVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDD 211

Query: 61  LQATALCL 68
           LQATALCL
Sbjct: 212 LQATALCL 219

[Close]

BLAST of Cp4.1LG16g07470 vs. TAIR 10
Match: AT1G50640.1 (ethylene responsive element binding factor 3 )

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-11
Identity = 38/64 (59.38%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 9   PVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALP--FDLNLPPPMDVVDL--TGDDLQAT 68
           PV P+DCHSDCDSSSSV+DDD+    +S RR  P  FDLN  PP+D VDL    DDL  T
Sbjct: 163 PVVPEDCHSDCDSSSSVIDDDDDIASSSRRRNPPFQFDLNF-PPLDCVDLFNGADDLHCT 222

[Close]

BLAST of Cp4.1LG16g07470 vs. TAIR 10
Match: AT3G20310.1 (ethylene response factor 7 )

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-11
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 2   VRRRP-VQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALP--FDLNLPPPMDVVDLTG 61
           ++R P   PV+P+DCHSDCDSSSSV+DD +    +S RR  P  FDLN  PP+D VDL  
Sbjct: 173 IKRYPRTPPVAPEDCHSDCDSSSSVIDDGDDIASSSSRRKTPFQFDLNF-PPLDGVDLFA 232

Query: 62  ---DDLQATALCL 69
              DDL  T L L
Sbjct: 233 GGIDDLHCTDLRL 244

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g07470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SXS8	9.0e-14	60.00	Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 ...	[more]
O80339	4.6e-10	59.38	Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]
Q9LDE4	4.6e-10	53.42	Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]

BLAST of Cp4.1LG16g07470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149613.1	2.40e-41	100.00	ethylene-responsive transcription factor 3 [Momordica charantia]	[more]
XP_038902603.1	2.47e-41	100.00	ethylene-responsive transcription factor 3-like [Benincasa hispida]	[more]
XP_004143195.1	2.47e-41	100.00	ethylene-responsive transcription factor 3 [Cucumis sativus] >XP_008456400.1 PRE...	[more]
XP_022944504.1	2.47e-41	100.00	ethylene-responsive transcription factor 3-like [Cucurbita moschata] >XP_0229860...	[more]
XP_022947976.1	2.75e-40	98.53	ethylene-responsive transcription factor 3-like [Cucurbita moschata] >XP_0229707...	[more]

BLAST of Cp4.1LG16g07470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D794	1.16e-41	100.00	ethylene-responsive transcription factor 3 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A5A7UIU5	1.20e-41	100.00	Ethylene-responsive transcription factor 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1J6H0	1.20e-41	100.00	ethylene-responsive transcription factor 3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0KBH0	1.20e-41	100.00	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G167230 PE=...	[more]
A0A6J1FWT6	1.20e-41	100.00	ethylene-responsive transcription factor 3-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cp4.1LG16g07470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50640.1	3.3e-11	59.38	ethylene responsive element binding factor 3	[more]
AT3G20310.1	3.3e-11	53.42	ethylene response factor 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g07470.1	Cp4.1LG16g07470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity