Cp4.1LG16g07370 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g07370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionProtein RALF-like 17
LocationCp4.1LG16: 7478400 .. 7478747 (-)
RNA-Seq ExpressionCp4.1LG16g07370
SyntenyCp4.1LG16g07370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTTTCAAGACGACTGGCCCTTCTCTCCCTCGGAACAATCCTTCTGTGCCTCTTGTTCGCTAGAGCCGCCATCGCCGAGTCCGACTACGGCGACGACATTCACGCCGTCAGGCATTCCTCCGCTTCCGACAACTGCAATCGCGAGCAACCCTACAAAGGCGACCAATGCAGGGAAGAAAACGACGGCGTAGAGGATGAAGATTTTGATGACACCTACAAGATCGTCAATAACGTCGCCATAAGGTTATCGGCGTCCGGAAGCAAACTTCGTGAGGCGGAGGAAGAGGACGATCTGCCGGTGCCCGAGGAAGAGATCCGCAATCTATCGATAGTGGGGCACTGA

mRNA sequence

ATGGCAGTTTCAAGACGACTGGCCCTTCTCTCCCTCGGAACAATCCTTCTGTGCCTCTTGTTCGCTAGAGCCGCCATCGCCGAGTCCGACTACGGCGACGACATTCACGCCGTCAGGCATTCCTCCGCTTCCGACAACTGCAATCGCGAGCAACCCTACAAAGGCGACCAATGCAGGGAAGAAAACGACGGCGTAGAGGATGAAGATTTTGATGACACCTACAAGATCGTCAATAACGTCGCCATAAGGTTATCGGCGTCCGGAAGCAAACTTCGTGAGGCGGAGGAAGAGGACGATCTGCCGGTGCCCGAGGAAGAGATCCGCAATCTATCGATAGTGGGGCACTGA

Coding sequence (CDS)

ATGGCAGTTTCAAGACGACTGGCCCTTCTCTCCCTCGGAACAATCCTTCTGTGCCTCTTGTTCGCTAGAGCCGCCATCGCCGAGTCCGACTACGGCGACGACATTCACGCCGTCAGGCATTCCTCCGCTTCCGACAACTGCAATCGCGAGCAACCCTACAAAGGCGACCAATGCAGGGAAGAAAACGACGGCGTAGAGGATGAAGATTTTGATGACACCTACAAGATCGTCAATAACGTCGCCATAAGGTTATCGGCGTCCGGAAGCAAACTTCGTGAGGCGGAGGAAGAGGACGATCTGCCGGTGCCCGAGGAAGAGATCCGCAATCTATCGATAGTGGGGCACTGA

Protein sequence

MAVSRRLALLSLGTILLCLLFARAAIAESDYGDDIHAVRHSSASDNCNREQPYKGDQCREENDGVEDEDFDDTYKIVNNVAIRLSASGSKLREAEEEDDLPVPEEEIRNLSIVGH
Homology
BLAST of Cp4.1LG16g07370 vs. NCBI nr
Match: KAG6570557.1 (hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215 bits (548), Expect = 3.41e-70
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 0

Query: 1   MAVSRRLALLSLGTILLCLLFARAAIAESDYGDDIHAVRHSSASDNCNREQPYKGDQCRE 60
           MAVSRRLALLSLGTILLCLLF RAAIAESDYGDDIH VRHSS SDNCNREQPYKGDQCRE
Sbjct: 1   MAVSRRLALLSLGTILLCLLFTRAAIAESDYGDDIHTVRHSSDSDNCNREQPYKGDQCRE 60

Query: 61  ENDGVEDEDFDDTYKIVNNVAIRLSASGSKLREAEEEDDLPVPEEEIRNLSIVGH 115
           ENDGVEDEDFDDTYKIVNNVAIRLSASGSKLREAEEEDDLPVPEEEIRNLSIVGH
Sbjct: 61  ENDGVEDEDFDDTYKIVNNVAIRLSASGSKLREAEEEDDLPVPEEEIRNLSIVGH 115

BLAST of Cp4.1LG16g07370 vs. NCBI nr
Match: KAA0054503.1 (hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK14536.1 hypothetical protein E5676_scaffold552G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (350), Expect = 5.46e-40
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 0

Query: 1   MAVSRRLAL-LSLGTILLCLLFARAAIAESDYGDDIHAVRHSSASDNCNREQPYKGDQCR 60
           MA+SRRLAL LSLGTIL   LF R + A SDYG+DIH VRH S + +C RE   KGDQCR
Sbjct: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60

Query: 61  EENDGVEDEDFDDTYKIVNNVAIRLSASGSKLR-EAEEEDDLPVPEEEIRNLSIVGH 115
           E+ND  ED+DFDDTYKIVNN+AI LSASGS L+ +AEE DD+P  EEEI N+ IVGH
Sbjct: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 117

BLAST of Cp4.1LG16g07370 vs. NCBI nr
Match: KAE8646929.1 (hypothetical protein Csa_021071 [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 5.54e-29
Identity = 71/115 (61.74%), Postives = 84/115 (73.04%), Query Frame = 0

Query: 1   MAVSRRLAL-LSLGTILLCLLFAR-AAIAESDYGDDIHAVRHSSASDNCNREQPYKGDQC 60
           MA+SRRL L L+LGTIL C LF   +A A  DYGDDIH V+H S +  C RE   KGDQC
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61  REENDGVEDEDFDDTYKIVNNVAIRLSASGSKLR-EAEEEDDLPVPEEEIRNLSI 112
           REEND  ED+DFDDTYKIVNN+A+ LSASG  L+ E EE +D+P  EEE+ N+ I
Sbjct: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILI 115

BLAST of Cp4.1LG16g07370 vs. NCBI nr
Match: KAG6604744.1 (hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (266), Expect = 1.52e-27
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 0

Query: 1  MAVSRRLALLSLGTILLCLLFARAAIAESDYGDDIHAVRHSSASDNCNREQPYKGDQCRE 60
          MAVSRRLAL SLGTILLC L  RAA+A+SD+G ++H VR+SSA+     ++  K  QCR+
Sbjct: 1  MAVSRRLALFSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAA----TDESEKAHQCRQ 60

Query: 61 ENDGVEDEDFDDTYKIVNNVAIRLSASGSKLRE 93
          END V+D DFDDTYKIVNN+AI LSASG  L+E
Sbjct: 61 ENDDVDD-DFDDTYKIVNNIAITLSASGRILKE 88

BLAST of Cp4.1LG16g07370 vs. NCBI nr
Match: KAB1208768.1 (hypothetical protein CJ030_MR6G024804 [Morella rubra])

HSP 1 Score: 72.0 bits (175), Expect = 1.77e-13
Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 0

Query: 1   MAVSRRLALLSLGTILLCLLFARAAIAES-DYGDDIHAVRHSSASDNCNREQPYKGDQCR 60
           MA+SR  AL  LGT+L+ L   +A  A+    G  IHAVR       C+ + P KGDQCR
Sbjct: 1   MAISRGAALFFLGTLLVSLSLIKATEADDFGVGVPIHAVRRDEKE--CDDQNPEKGDQCR 60

Query: 61  EENDGVEDEDFDDTYKIVNNVAIRLSASGSKLREAEEEDDLPVPEEEIRN-LSIVGH 115
           ++++   D+D DDT+K+VN +++ LSAS  K+  +    D  +  EE+ N + ++GH
Sbjct: 61  DDHNPGVDDDVDDTFKVVNKMSVSLSASSGKVSVSATPFDTTLDTEELSNHVLVLGH 115

BLAST of Cp4.1LG16g07370 vs. ExPASy TrEMBL
Match: A0A5D3CVV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00150 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 2.64e-40
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 0

Query: 1   MAVSRRLAL-LSLGTILLCLLFARAAIAESDYGDDIHAVRHSSASDNCNREQPYKGDQCR 60
           MA+SRRLAL LSLGTIL   LF R + A SDYG+DIH VRH S + +C RE   KGDQCR
Sbjct: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60

Query: 61  EENDGVEDEDFDDTYKIVNNVAIRLSASGSKLR-EAEEEDDLPVPEEEIRNLSIVGH 115
           E+ND  ED+DFDDTYKIVNN+AI LSASGS L+ +AEE DD+P  EEEI N+ IVGH
Sbjct: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 117

BLAST of Cp4.1LG16g07370 vs. ExPASy TrEMBL
Match: A0A0A0KGZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 7.04e-36
Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 0

Query: 1   MAVSRRLAL-LSLGTILLCLLFAR-AAIAESDYGDDIHAVRHSSASDNCNREQPYKGDQC 60
           MA+SRRL L L+LGTIL C LF   +A A  DYGDDIH V+H S +  C RE   KGDQC
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61  REENDGVEDEDFDDTYKIVNNVAIRLSASGSKLR-EAEEEDDLPVPEEEIRNLSIVGH 115
           REEND  ED+DFDDTYKIVNN+A+ LSASG  L+ E EE +D+P  EEE+ N+ IVGH
Sbjct: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH 118

BLAST of Cp4.1LG16g07370 vs. ExPASy TrEMBL
Match: A0A2N9FLD3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.23e-16
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 0

Query: 1   MAVSRRLALLSLGTILLCLLFARAAIA-ESDYGDDIHAVRHSSASDNCNREQPYKGDQCR 60
           MA+SR + L  LGT+L+CLL  + + A ESD+   IH ++H     +C+   P  GDQCR
Sbjct: 1   MAISRSVLLFGLGTLLVCLLLIKVSEADESDHYAPIHVIKHDGI--HCDGAHPNNGDQCR 60

Query: 61  EENDGVE--DEDFDDTYKIVNNVAIRLSASGSKLREAEE--EDDLPVPEEEIRNLSIV-G 115
            ++D  E  D+D DDTYK+VN +++  SAS  +   +E+  E D    EEE+ N  IV G
Sbjct: 61  NDDDDNEEVDDDVDDTYKVVNKMSVSFSASTGQSSSSEDPSESDATSTEEELNNHMIVLG 119

BLAST of Cp4.1LG16g07370 vs. ExPASy TrEMBL
Match: A0A6A1VA77 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G024804 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.59e-14
Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 0

Query: 1   MAVSRRLALLSLGTILLCLLFARAAIAES-DYGDDIHAVRHSSASDNCNREQPYKGDQCR 60
           MA+SR  AL  LGT+L+ L   +A  A+    G  IHAVR       C+ + P KGDQCR
Sbjct: 1   MAISRGAALFFLGTLLVSLSLIKATEADDFGVGVPIHAVRRDEKE--CDDQNPEKGDQCR 60

Query: 61  EENDGVEDEDFDDTYKIVNNVAIRLSASGSKLREAEEEDDLPVPEEEIRN-LSIVGH 115
           ++++   D+D DDT+K+VN +++ LSAS  K+  +    D  +  EE+ N + ++GH
Sbjct: 61  DDHNPGVDDDVDDTFKVVNKMSVSLSASSGKVSVSATPFDTTLDTEELSNHVLVLGH 115

BLAST of Cp4.1LG16g07370 vs. ExPASy TrEMBL
Match: A0A498J3I4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032407 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.18e-12
Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = 0

Query: 1   MAVSRRLALLSLGTILLCLLFARAAIAESDYGDDIHAVRHSSASDNCNREQPYKGDQCRE 60
           MAVSRRL LL LGT+L  +   + A A  ++GD             C+ + P  GDQCRE
Sbjct: 1   MAVSRRLLLLCLGTLLASVFLLKVAEARENHGD-------------CHSD-PNNGDQCRE 60

Query: 61  -ENDGVEDEDFDDTYKIVNNVAIRLSASGSKLREAEEEDDLPVPEE----EIRNLSIVGH 115
            E D V D+D DDTYKIVN VA+ LSA   ++    + D+LP  +E    E  ++ ++GH
Sbjct: 61  DETDAVGDDDVDDTYKIVNKVAVTLSARTGEVEP--DADELPDADETEDNESSHVIVMGH 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6570557.13.41e-7097.39hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0054503.15.46e-4067.52hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK1453... [more]
KAE8646929.15.54e-2961.74hypothetical protein Csa_021071 [Cucumis sativus][more]
KAG6604744.11.52e-2764.52hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAB1208768.11.77e-1339.32hypothetical protein CJ030_MR6G024804 [Morella rubra][more]
Match NameE-valueIdentityDescription
A0A5D3CVV22.64e-4067.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KGZ47.04e-3662.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1[more]
A0A2N9FLD35.23e-1642.15Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1[more]
A0A6A1VA778.59e-1439.32Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G024804 PE=4 SV=1[more]
A0A498J3I44.18e-1241.67Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032407 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g07370.1Cp4.1LG16g07370.1mRNA