Cp4.1LG16g05970 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g05970
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG16: 6623327 .. 6624696 (-)
RNA-Seq Expression	Cp4.1LG16g05970
Synteny	Cp4.1LG16g05970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGAACTTCAAAATTTAGGTTTGAAATCGATGCGTTCTTTATTTAAAGAAATTGAAGGGATTGTATGCTCGTCTTCAAGACTTTGGTTCAATCCATTTTGGTTTTCAAGAACACGAAACTCTGTAATTTTCTACTCAATTTAAACACATTGATTCAGTCTAAATCTCAAGAACATGCGTTTCAAGGCCCAAGAACAACTATGGCAGAAGCTATTTCAGAAAGAGGTAGAGCGCCGCCGTAAAATCCGCCAGAAGTTGGAGGAGAAGAACCGCCTGCCGCCACAACCACCGCAACGCCGAGATTTCGTGAGTGCTCCATCGGTTGAATCAGTAGATTATTATAGGCTAACTTCATTTCTTGAAATCGATCGCTCGTTTTTTTCGCCGTGGAATTGGAGCCCTAATTCGCCGCAAAATCAAGACAATGCAAGAACAAAGCACCGCCACCGTATGAATTTTCAACCAGGTTCGTTCTTCAGCGTCGATCTGGTGTTTTATTTCCGGTAAATGATTTTTGTAGCGCGATCGTGGCGTTCCGCGATGAAAATTGTTCCAATTTGCTTAATCGATTATCATATTTTGGAGTTATAATTTTCGCTTTTCTCATATACTTCAATCAATTCTTTCAAACAGCCATCAATTTCTTCATATTTTTTGGAAGATTCTTGAAAGATGAAACAAAATTTTTAGTATGTTTACAGTAACAATAAATAAATGAAATATTCTACACAAAAGAAAGAAAAAATTATGTCAAGCAACCAACCGGCGGAGCCATCAACTGCAACCGAACAAGATCATTCTCCAACGGCGTCAGATTCAAATCCACTCCAAAAATTCCTCCAACGCCGATGTCGTAATCGGATTCATCGGAGACAGGGTGAGTCGTCGGTGGACAATCGGCGAGCGGAGAAGAGTTCCGGTGGCGGCGCATATGGCCGCCGAGCGCCTGCCCTAGGGGAAACTCAAGTCCACAGACAGAGCACTCATGAGCCTTCGTCTTAATAGCATTATTATGAAGACCGTCACCGGACAGAAACGGTTTGAGCTTCCGATGAGAAGCTCTGTGGCCGCCAAGAGCTTGAAACGAGGAAAATTCACGATTACAAGTTTTGCAGACAAAAACTCGGCCGGAAAACGCCGCCGTGTTGGCGTGGTTTGAAATCAAGCAATCGGCGACTCCCATTACGTCGATTTGAGATTGAACTCTGAATCGCTTCATCAGATGGAAAGGAAACAAAATCAGATGAGTGAGCGGATATGGAAATTGGATCAAAATGTATCAATATATATATATATATTATATGTCGGCAGATTCATGAAGGTGTGGATGCGGCGGAGAGGGATGAATGAAGCCGGAAAGCGCTGCGATG

mRNA sequence

TAAGAACTTCAAAATTTAGGTTTGAAATCGATGCGTTCTTTATTTAAAGAAATTGAAGGGATTGTATGCTCGTCTTCAAGACTTTGGTTCAATCCATTTTGGTTTTCAAGAACACGAAACTCTGTAATTTTCTACTCAATTTAAACACATTGATTCAGTCTAAATCTCAAGAACATGCGTTTCAAGGCCCAAGAACAACTATGGCAGAAGCTATTTCAGAAAGAGGTAGAGCGCCGCCGTAAAATCCGCCAGAAGTTGGAGGAGAAGAACCGCCTGCCGCCACAACCACCGCAACGCCGAGATTTCGTGAGTGCTCCATCGGTTGAATCAGTAGATTATTATAGGCTAACTTCATTTCTTGAAATCGATCGCTCGTTTTTTTCGCCGTGGAATTGGAGCCCTAATTCGCCGCAAAATCAAGACAATGCAAGAACAAAGCACCGCCACCGTATGAATTTTCAACCAGTAACAATAAATAAATGAAATATTCTACACAAAAGAAAGAAAAAATTATGTCAAGCAACCAACCGGCGGAGCCATCAACTGCAACCGAACAAGATCATTCTCCAACGGCGTCAGATTCAAATCCACTCCAAAAATTCCTCCAACGCCGATGTCGTAATCGGATTCATCGGAGACAGGGTGAGTCGTCGGTGGACAATCGGCGAGCGGAGAAGAGTTCCGGTGGCGGCGCATATGGCCGCCGAGCGCCTGCCCTAGGGGAAACTCAAGTCCACAGACAGAGCACTCATGAGCCTTCGTCTTAATAGCATTATTATGAAGACCGTCACCGGACAGAAACGGTTTGAGCTTCCGATGAGAAGCTCTGTGGCCGCCAAGAGCTTGAAACGAGGAAAATTCACGATTACAAGTTTTGCAGACAAAAACTCGGCCGGAAAACGCCGCCGTGTTGGCGTGGTTTGAAATCAAGCAATCGGCGACTCCCATTACGTCGATTTGAGATTGAACTCTGAATCGCTTCATCAGATGGAAAGGAAACAAAATCAGATGAGTGAGCGGATATGGAAATTGGATCAAAATGTATCAATATATATATATATATTATATGTCGGCAGATTCATGAAGGTGTGGATGCGGCGGAGAGGGATGAATGAAGCCGGAAAGCGCTGCGATG

Coding sequence (CDS)

ATGCGTTTCAAGGCCCAAGAACAACTATGGCAGAAGCTATTTCAGAAAGAGGTAGAGCGCCGCCGTAAAATCCGCCAGAAGTTGGAGGAGAAGAACCGCCTGCCGCCACAACCACCGCAACGCCGAGATTTCGTGAGTGCTCCATCGGTTGAATCAGTAGATTATTATAGGCTAACTTCATTTCTTGAAATCGATCGCTCGTTTTTTTCGCCGTGGAATTGGAGCCCTAATTCGCCGCAAAATCAAGACAATGCAAGAACAAAGCACCGCCACCGTATGAATTTTCAACCAGTAACAATAAATAAATGA

Protein sequence

MRFKAQEQLWQKLFQKEVERRRKIRQKLEEKNRLPPQPPQRRDFVSAPSVESVDYYRLTSFLEIDRSFFSPWNWSPNSPQNQDNARTKHRHRMNFQPVTINK

Homology

[Close]

BLAST of Cp4.1LG16g05970 vs. NCBI nr
Match: KAG6605482.1 (hypothetical protein SDJN03_02799, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 6.96e-12
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 35  PPQPPQRRDFVSAPSVESVDYYRLTSFLEIDRSFFSPWNWSPNSPQNQDNARTKHR 90
           PP PP  ++F        +DY  LTSFLE+DRSFFSPWNW+PNSPQ+ +NAR   R
Sbjct: 68  PPPPPPPQEF-------EIDYNGLTSFLEVDRSFFSPWNWNPNSPQDSENARGNDR 116

[Close]

BLAST of Cp4.1LG16g05970 vs. NCBI nr
Match: XP_022148435.1 (uncharacterized protein LOC111017083 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 8.53e-09
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 39 PQRRDFVSAPSVESV--DYYRLTSFLEIDRSFFSPWNWSPNSPQNQD 83
          P+ +  ++ PSVE++  DY RLT+FLE DRSFFSPWNWSPN    QD
Sbjct: 33 PRHQSLIAPPSVEALELDYSRLTAFLEADRSFFSPWNWSPNYAPLQD 79

[Close]

BLAST of Cp4.1LG16g05970 vs. NCBI nr
Match: TQD84532.1 (hypothetical protein C1H46_029920 [Malus baccata])

HSP 1 Score: 56.6 bits (135), Expect = 2.19e-07
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 43  DFVSAPSVESVDYYRLTSFLEIDRSFFSPWNWSPNSPQNQDNA---RTKHRHRMNFQP 97
           D V A  + ++DY RLTSFLE D SF +PWNW+P++P   D+     T ++  + FQP
Sbjct: 50  DQVMADHIPTIDYKRLTSFLEFDNSFLTPWNWNPSAPSTSDSKSSLETTNQDYIMFQP 107

[Close]

BLAST of Cp4.1LG16g05970 vs. NCBI nr
Match: RXH84505.1 (hypothetical protein DVH24_032789 [Malus domestica])

HSP 1 Score: 56.6 bits (135), Expect = 2.19e-07
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 43  DFVSAPSVESVDYYRLTSFLEIDRSFFSPWNWSPNSPQNQDNA---RTKHRHRMNFQP 97
           D V A  + ++DY RLTSFLE D SF +PWNW+P++P   D+     T ++  + FQP
Sbjct: 50  DQVMADHIPTIDYKRLTSFLEFDNSFLTPWNWNPSAPSTSDSKSSLETTNQDYIMFQP 107

[Close]

BLAST of Cp4.1LG16g05970 vs. NCBI nr
Match: KAB2606850.1 (hypothetical protein D8674_006567 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 53.5 bits (127), Expect = 2.59e-06
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 43 DFVSAPSVESVDYYRLTSFLEIDRSFFSPWNWSPNSPQNQDN---ARTKHRHRMNFQP 97
          D V A    ++DY RLTSFLE D SF +PWNW+P+ P   D+     T  +  + FQP
Sbjct: 36 DQVMADHKPTIDYMRLTSFLEFDDSFLTPWNWNPSGPSTSDSKSSVETTSQDYVMFQP 93

[Close]

BLAST of Cp4.1LG16g05970 vs. ExPASy TrEMBL
Match: A0A6J1D2W9 (uncharacterized protein LOC111017083 OS=Momordica charantia OX=3673 GN=LOC111017083 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.13e-09
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 39 PQRRDFVSAPSVESV--DYYRLTSFLEIDRSFFSPWNWSPNSPQNQD 83
          P+ +  ++ PSVE++  DY RLT+FLE DRSFFSPWNWSPN    QD
Sbjct: 33 PRHQSLIAPPSVEALELDYSRLTAFLEADRSFFSPWNWSPNYAPLQD 79

[Close]

BLAST of Cp4.1LG16g05970 vs. ExPASy TrEMBL
Match: A0A498IQS9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032789 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.06e-07
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 43  DFVSAPSVESVDYYRLTSFLEIDRSFFSPWNWSPNSPQNQDNA---RTKHRHRMNFQP 97
           D V A  + ++DY RLTSFLE D SF +PWNW+P++P   D+     T ++  + FQP
Sbjct: 50  DQVMADHIPTIDYKRLTSFLEFDNSFLTPWNWNPSAPSTSDSKSSLETTNQDYIMFQP 107

[Close]

BLAST of Cp4.1LG16g05970 vs. ExPASy TrEMBL
Match: A0A540LE23 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029920 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.06e-07
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 43  DFVSAPSVESVDYYRLTSFLEIDRSFFSPWNWSPNSPQNQDNA---RTKHRHRMNFQP 97
           D V A  + ++DY RLTSFLE D SF +PWNW+P++P   D+     T ++  + FQP
Sbjct: 50  DQVMADHIPTIDYKRLTSFLEFDNSFLTPWNWNPSAPSTSDSKSSLETTNQDYIMFQP 107

[Close]

BLAST of Cp4.1LG16g05970 vs. ExPASy TrEMBL
Match: A0A5N5FZI6 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_006567 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.25e-06
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 43 DFVSAPSVESVDYYRLTSFLEIDRSFFSPWNWSPNSPQNQDN---ARTKHRHRMNFQP 97
          D V A    ++DY RLTSFLE D SF +PWNW+P+ P   D+     T  +  + FQP
Sbjct: 36 DQVMADHKPTIDYMRLTSFLEFDDSFLTPWNWNPSGPSTSDSKSSVETTSQDYVMFQP 93

[Close]

BLAST of Cp4.1LG16g05970 vs. ExPASy TrEMBL
Match: A0A660KUE7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011451 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.37e-06
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 53  VDYYRLTSFLEIDRSFFSPWNWSPNSPQ---NQDNARTKHRHRMNFQP 97
           VDY +LTSFLE+D SF SPW W P+      + D+   + + RMNFQP
Sbjct: 110 VDYPQLTSFLEVDDSFLSPWRWKPDDDDYEDDDDHEEVRGQERMNFQP 157

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g05970 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g05970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605482.1	6.96e-12	57.14	hypothetical protein SDJN03_02799, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022148435.1	8.53e-09	59.57	uncharacterized protein LOC111017083 [Momordica charantia]	[more]
TQD84532.1	2.19e-07	44.83	hypothetical protein C1H46_029920 [Malus baccata]	[more]
RXH84505.1	2.19e-07	44.83	hypothetical protein DVH24_032789 [Malus domestica]	[more]
KAB2606850.1	2.59e-06	44.83	hypothetical protein D8674_006567 [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of Cp4.1LG16g05970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2W9	4.13e-09	59.57	uncharacterized protein LOC111017083 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A498IQS9	1.06e-07	44.83	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032789 PE=4 SV=1	[more]
A0A540LE23	1.06e-07	44.83	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029920 PE=4 SV=1	[more]
A0A5N5FZI6	1.25e-06	44.83	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A660KUE7	6.37e-06	50.00	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011451 PE=4 SV=1	[more]

BLAST of Cp4.1LG16g05970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g05970.1	Cp4.1LG16g05970.1	mRNA