Cp4.1LG16g05950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g05950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionHistone H2B
LocationCp4.1LG16: 6639194 .. 6642558 (+)
RNA-Seq ExpressionCp4.1LG16g05950
SyntenyCp4.1LG16g05950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCAAAGGCAGATAAGAAACCCGCCGAGAAGAAGCCAGCCGCTGAAAAGCCGGCCGAGGAGAAGAAATCTGTCGCGGAGAAAGCTCCGGCGGAGAAAAAGCCCAAGGCTGGAAAGAAGCTTCCGAAGGAAGGCGGTGCCGCTGCTGCCGGAGATAAGAAGAAGAAGAGGTCGAAGAAGAGCGTAGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCTGACATCGGTATTTCCAGCAAGGCCATGGGTATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTCGCTCAGGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCTACCATAACTTCAAGGGAGATCCAGACAGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCTGTGTCTGAGGGTACTAAGGCAGTAACTAAGTTCACAAGTTCTTAGAATCTGAATTAGGCGAAGCAATGGATGCCGATAGGTGCCTTTAGGTGAAAGAGATTATTAAGAAATTAGGGTTAGGAGCTCTGTTTTACCTATTATGATGCGTTCCTGTATTTGATAGCTTTTGGATTTGACAAGTTTTCTCATATAGATGCTTATGATTTGTAAATTCTACTTTTATGTGCTTGTAATGGAAGTGATTTTGTTCATCTGTCTCTTCTCGTCAAAAGAAAATTATCTGGCTGATCTTCGGAGCGGAATTGTTGATCTCTTACCTTTTGACCTTGCTGATACTCGTCTGAATCATATCATTGGGAATTTGTTCCTTGCCGTCAAAAATCAGTGTTCGCCCGTTGAATTTGGTGCTCTTGGATTTGTTCTTCCTGGATTGAGATTGGTTAGCTGCATCATAAACTTTTGCACACTTTCCATCGTGATTAATTAAGCTGTCTCATCTATGCATACATGTTTTAGATTCTTGGACTTTTTGTAGCCTTATTCTCAACTGATCTCTCATCAGTGTCTATGCTGTTTGGTATCTTGATTTGTTTTTGCTTGAATACTTGGGATTTCTCAAGTATGGCGTAGAAATTTGATTTGACATTGGTTTTAATTGTGTTTTTTTTGGCTGTAATCTGTCAAGCACGAGATGAATTTGGCTACACAATACAAGAAAGTGCTGGTGCTGCTACTGCTGGCTGCCACTTGAAGACTTGTTGGGTTAGATGTTCTTGCTTGTTCTTTGATTATTTTGAAATCGTAAATAACCATGATTGTTGCCTCAATAATACTCTATTACTTAGTATCATCTTAGTGCTGCCATTGCTGAATTTTCAAGGAATATTTACATTTCTTAAACTTGTCGTTCATCAGATCGATATTTTTGTTTGTTAGCTTGTCTGCATCATATAATCAGAAGACTCCAAATTTGATGGTGTCTTCTGTGAAAGACTGAGTTTATGTTGTGGGTGGTAACCGCGGTGCATTCTGTCTCTTTCTCCAACCTCAAGAATAGATATCTATTTTTTTTTTTTTTTTTACACTAATCGTAGGTTTGAAATAGGGTCTCGGCGTTCTTTTGCAACATGATCATACTATCTACTTTTCTTGAAGCATTTTTAAGAATCTAGACTATCTTTACAAACTAACACGGATTCTTAACACTTTTTTGTCTCTACTCACGTGTTCTTTAGAAATTTTTTTAAGAGATCACTTAGCATAAGATTGTTCTATTTAGCTAAACATGCTTTAATCTTAGAGTTTTTATGATCGAGCCATTAAAGGAGAAGTTGTTGGATCTTATATGTATAGGTCGTGTGTCGTAGCTTTCAATTCTTGTAAGTCCTTAACCGTACTCTCTTTAGTATCACTCTCATTCGTTTCAATCATGTATCTTCCTTTACTCGAGTGATACATTAATAGTTGTGGGTTTTGTTTTTTGGGATCATAACCCTTATATTTGGTAATGAATTCGTATATTTATCGGTATTAATGTCGGTAGTGCCCCTTATTTATAATTGAATCTTCCTTTACTCTAGTGATACATTAATAGCGATGGGTTTTGTTTTTTGGGATCATAACACTTATATTTGGTAATGAATTCTTATATTTATCGGTATTAATGTCGGTAGTGTCCCTTATTTATAATTGAATCTTCCTTTACTCAAGTGATACATGGGTTTTGATTTTTGGGATCATAACACTTATATTTGGTAATGAATTCGTATATTTATCGGTATTAATGTCGGTAGTGTCCCTTATTTATACACTCGGGATCTTTCCTTTATGACCATTTTGAGCATAAGATTTCATAGCTTAATATCTATAGTGTCCTTTATTTATGTACTCATGTCCATTTTGAGTACAAACTTATCGAGAGTGTCCTTTATTTATATACTTAGGATTTCCGTTATGATATTATCTATTTTGAGTATAAGTTTTTATAGTTCAACTTCAATACTATCCCTTATTTATATACTTATGATCTTCTAGGCTTAAAAAGTTTTTTTTTTCTCTTTTTAGGTACTAAAAAAACGTGGCAAGCTGATATGAATGAAACAGAGAAGAATCTTCCTTAGGCAGTTTGTTAAACGTGCACCCATTTTCCCTCCATCTTCAAATAAAATAACCCCTCGATGCCATACCCACATTCATCCGCATCACAAGCCTCGTCGTTTACTTTCTTCTTCCTTCTCCAATGGCCATCTCCATCCTCCACCGCTTCTCTCTGTATCCCCCTCTCTGTCTCATCGCCGCCAAGTGGACGGCGCTACTAACGCTAACAGCCGCCGTGGCCTCCTTTGCTCCAGTGTTTATTTTCACCAATGCGACGTCGCTTTCTTCGTCGTTTTCCAAATCATGCGGTCGTGACGGCTACATCAGGATCCCGCTGGACCTTCCCGGCGATGTTCTGTGCGTGCCGGCGAAAATGGTGAATCGGTCCAATTTGGATTTCTTCGTTCCTACTGTGTTTGCGGCACTCGGCGTCGGCGTTTCCGCTTGCTTCGTTAGATCCGTTGGATTGTGGGAGAATCCTCAGACTTCTCGATTCGATCACAGTTGATGCAATTTCAAGAACAAAGGCTCTTTGTGTTCATTCATGTCGCGGACGATATTCGATCGATCCTCGGCTCTGTTTTGAATTTTGCCGATGAAAATTTGGGGTTGGTGCCGCTGCTCAGAGCAAGAGGTCTGAAAAATTTATTGGGCCTTGAAACGGCCCATTCAAAATGGACTGCTGCATGATACTGGGCCCAAGCCCAACTTTGAATGGGCCTCTTTCTATTTTGTGTCAATTGTGTTTAGAAAAATTTAAAATAAAAATTAAGCGTCTTAATTAAAAATTAATACATTTTAAATTTTGTATAGAAAATAACTATTTGATGAGGCATAAAAAAGTTAAAATT

mRNA sequence

ATGGCGCCAAAGGCAGATAAGAAACCCGCCGAGAAGAAGCCAGCCGCTGAAAAGCCGGCCGAGGAGAAGAAATCTGTCGCGGAGAAAGCTCCGGCGGAGAAAAAGCCCAAGGCTGGAAAGAAGCTTCCGAAGGAAGGCGGTGCCGCTGCTGCCGGAGATAAGAAGAAGAAGAGGTCGAAGAAGAGCGTAGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCTGACATCGGTATTTCCAGCAAGGCCATGGGTATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTCGCTCAGGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCTACCATAACTTCAAGGGAGATCCAGACAGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCTGTGTCTGAGGGTACTAAGGCAATGCTTATGATTTGTAAATTCTACTTTTATGTGCTTGTAATGGAAGTGATTTTGTTCATCTGTCTCTTCTCGTCAAAAGAAAATTATCTGGCTGATCTTCGGAGCGGAATTGTTGATCTCTTACCTTTTGACCTTGCTGATACTCGTCTGAATCATATCATTGGGAATTTGTTCCTTGCCGTCAAAAATCAGTGTTCGCCCGTTGAATTTGGTGCTCTTGGATTTGTTCTTCCTGGATTGAGATTGATTCTTGGACTTTTTGTAGCCTTATTCTCAACTGATCTCTCATCAGTGTCTATGCTGTTTGGTACTAAAAAAACGTGGCAAGCTGATATGAATGAAACAGAGAAGAATCTTCCTTAGGCAGTTTGTTAAACGTGCACCCATTTTCCCTCCATCTTCAAATAAAATAACCCCTCGATGCCATACCCACATTCATCCGCATCACAAGCCTCGTCGTTTACTTTCTTCTTCCTTCTCCAATGGCCATCTCCATCCTCCACCGCTTCTCTCTGTATCCCCCTCTCTGTCTCATCGCCGCCAAGTGGACGGCGCTACTAACGCTAACAGCCGCCGTGGCCTCCTTTGCTCCAGTGTTTATTTTCACCAATGCGACGTCGCTTTCTTCGTCGTTTTCCAAATCATGCGGTCGTGACGGCTACATCAGGATCCCGCTGGACCTTCCCGGCGATGTTCTGTGCGTGCCGGCGAAAATGGTGAATCGGTCCAATTTGGATTTCTTCGTTCCTACTGTGTTTGCGGCACTCGGCGTCGGCGTTTCCGCTTGCTTCGTTAGATCCGTTGGATTGTGGGAGAATCCTCAGACTTCTCGATTCGATCACAGTTGATGCAATTTCAAGAACAAAGGCTCTTTGTGTTCATTCATGTCGCGGACGATATTCGATCGATCCTCGGCTCTGTTTTGAATTTTGCCGATGAAAATTTGGGGTTGGTGCCGCTGCTCAGAGCAAGAGGTCTGAAAAATTTATTGGGCCTTGAAACGGCCCATTCAAAATGGACTGCTGCATGATACTGGGCCCAAGCCCAACTTTGAATGGGCCTCTTTCTATTTTGTGTCAATTGTGTTTAGAAAAATTTAAAATAAAAATTAAGCGTCTTAATTAAAAATTAATACATTTTAAATTTTGTATAGAAAATAACTATTTGATGAGGCATAAAAAAGTTAAAATT

Coding sequence (CDS)

ATGGCGCCAAAGGCAGATAAGAAACCCGCCGAGAAGAAGCCAGCCGCTGAAAAGCCGGCCGAGGAGAAGAAATCTGTCGCGGAGAAAGCTCCGGCGGAGAAAAAGCCCAAGGCTGGAAAGAAGCTTCCGAAGGAAGGCGGTGCCGCTGCTGCCGGAGATAAGAAGAAGAAGAGGTCGAAGAAGAGCGTAGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTTCATCCTGACATCGGTATTTCCAGCAAGGCCATGGGTATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTCGCTCAGGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCTACCATAACTTCAAGGGAGATCCAGACAGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCTGTGTCTGAGGGTACTAAGGCAATGCTTATGATTTGTAAATTCTACTTTTATGTGCTTGTAATGGAAGTGATTTTGTTCATCTGTCTCTTCTCGTCAAAAGAAAATTATCTGGCTGATCTTCGGAGCGGAATTGTTGATCTCTTACCTTTTGACCTTGCTGATACTCGTCTGAATCATATCATTGGGAATTTGTTCCTTGCCGTCAAAAATCAGTGTTCGCCCGTTGAATTTGGTGCTCTTGGATTTGTTCTTCCTGGATTGAGATTGATTCTTGGACTTTTTGTAGCCTTATTCTCAACTGATCTCTCATCAGTGTCTATGCTGTTTGGTACTAAAAAAACGTGGCAAGCTGATATGAATGAAACAGAGAAGAATCTTCCTTAG

Protein sequence

MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAMLMICKFYFYVLVMEVILFICLFSSKENYLADLRSGIVDLLPFDLADTRLNHIIGNLFLAVKNQCSPVEFGALGFVLPGLRLILGLFVALFSTDLSSVSMLFGTKKTWQADMNETEKNLP
Homology
BLAST of Cp4.1LG16g05950 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 235.7 bits (600), Expect = 5.9e-61
Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEK     KPAEEKK+VAEKAPAEKKPKAGKKLPKEGG AAAGDKKKKR K
Sbjct: 1   MAPKAEKKPAEK-----KPAEEKKAVAEKAPAEKKPKAGKKLPKEGG-AAAGDKKKKRVK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAM 148
           REIQTAVRLVLPGELAKHAVSEGTKA+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAV 141

BLAST of Cp4.1LG16g05950 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 233.4 bits (594), Expect = 2.9e-60
Identity = 134/147 (91.16%), Postives = 138/147 (93.88%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEKKPA+EKP EE KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  K
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAM 148
           REIQTAVRLVLPGELAKHAVSEGTKA+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAV 144

BLAST of Cp4.1LG16g05950 vs. ExPASy Swiss-Prot
Match: O23629 (Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3)

HSP 1 Score: 232.6 bits (592), Expect = 5.0e-60
Identity = 134/147 (91.16%), Postives = 137/147 (93.20%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAP+A+KKPAEKKPAAEKP EE KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  K
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAM 148
           REIQTAVRLVLPGELAKHAVSEGTKA+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAV 144

BLAST of Cp4.1LG16g05950 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 232.3 bits (591), Expect = 6.6e-60
Identity = 133/147 (90.48%), Postives = 139/147 (94.56%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPK +KKPAEKKPA EK    K +VAEKAPAEKKPKAGKKLPKEGG +AAG+KKKKRSK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGG-SAAGEKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAM 148
           REIQTAVRLVLPGELAKHAVSEGTKA+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAV 142

BLAST of Cp4.1LG16g05950 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 228.4 bits (581), Expect = 9.5e-59
Identity = 131/147 (89.12%), Postives = 137/147 (93.20%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPK +KKPAEKKPA EK    K +VAEKAPAEKKPKAGKKLPKEGG +AAG+KKKKRSK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGG-SAAGEKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAM 148
           REIQTAVRLVLPGELAKH VSEGTKA+
Sbjct: 121 REIQTAVRLVLPGELAKHDVSEGTKAV 142

BLAST of Cp4.1LG16g05950 vs. NCBI nr
Match: XP_023512034.1 (histone H2B.11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262 bits (670), Expect = 1.41e-83
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146
           REIQTAVRLVLPGELAKHAVSEGTKA
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146

BLAST of Cp4.1LG16g05950 vs. NCBI nr
Match: XP_022943869.1 (histone H2B.11-like [Cucurbita moschata])

HSP 1 Score: 262 bits (670), Expect = 1.41e-83
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146
           REIQTAVRLVLPGELAKHAVSEGTKA
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146

BLAST of Cp4.1LG16g05950 vs. NCBI nr
Match: KAG6570724.1 (Histone H2B.6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259 bits (661), Expect = 1.70e-83
Identity = 173/266 (65.04%), Postives = 178/266 (66.92%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAMLMICKFYFYVLVMEVILFICLFSSKENYLADLR 180
           REIQTAVRLVLP                                        ENYLADLR
Sbjct: 121 REIQTAVRLVLP----------------------------------------ENYLADLR 180

Query: 181 SGIVDLLPFDLADTRLNHIIGNLFLAVKNQCSPVEFGALGFVLPGLRLILGLFVALFSTD 240
           S IVDLLPFDLAD             V  Q    EFG        ++   G   A     
Sbjct: 181 SEIVDLLPFDLADRP-----------VICQARD-EFGYT------IQESAGAGAATAGCH 205

Query: 241 LSSVSMLFGTKKTWQADMNETEKNLP 266
           L +  +L   K+TWQ D NET KNLP
Sbjct: 241 LKTCWIL---KETWQRDTNETGKNLP 205

BLAST of Cp4.1LG16g05950 vs. NCBI nr
Match: XP_022986974.1 (histone H2B.11-like [Cucurbita maxima])

HSP 1 Score: 261 bits (667), Expect = 4.01e-83
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAA+GDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAASGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146
           REIQTAVRLVLPGELAKHAVSEGTKA
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146

BLAST of Cp4.1LG16g05950 vs. NCBI nr
Match: KAG7010568.1 (Histone H2B.6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262 bits (670), Expect = 4.67e-83
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146
           REIQTAVRLVLPGELAKHAVSEGTKA
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146

BLAST of Cp4.1LG16g05950 vs. ExPASy TrEMBL
Match: A0A6J1FVH6 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111448469 PE=3 SV=1)

HSP 1 Score: 262 bits (670), Expect = 6.83e-84
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146
           REIQTAVRLVLPGELAKHAVSEGTKA
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146

BLAST of Cp4.1LG16g05950 vs. ExPASy TrEMBL
Match: A0A6J1JHJ9 (Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111484551 PE=3 SV=1)

HSP 1 Score: 261 bits (667), Expect = 1.94e-83
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAA+GDKKKKRSK
Sbjct: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAASGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146
           REIQTAVRLVLPGELAKHAVSEGTKA
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146

BLAST of Cp4.1LG16g05950 vs. ExPASy TrEMBL
Match: A0A0A0KHC9 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1)

HSP 1 Score: 253 bits (645), Expect = 3.22e-82
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKADKKPAEKKPA+EKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAA GDKKKKR+K
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAA-GDKKKKRTK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146
           REIQTAVRLVLPGELAKHAVSEGTKA
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKA 145

BLAST of Cp4.1LG16g05950 vs. ExPASy TrEMBL
Match: A0A2G5CM59 (Histone H2B OS=Aquilegia coerulea OX=218851 GN=AQUCO_04500159v1 PE=3 SV=1)

HSP 1 Score: 252 bits (643), Expect = 6.71e-82
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEKKPAAEKP EEKK VAEK PAEKKPKAGKKLPKEGGAAA+GDKKKKRSK
Sbjct: 1   MAPKAEKKPAEKKPAAEKPTEEKKVVAEKGPAEKKPKAGKKLPKEGGAAASGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITS
Sbjct: 61  KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146
           REIQTAVRLVLPGELAKHAVSEGTKA
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146

BLAST of Cp4.1LG16g05950 vs. ExPASy TrEMBL
Match: A0A6J1G728 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111451349 PE=3 SV=1)

HSP 1 Score: 251 bits (641), Expect = 1.31e-81
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEK+PAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAA  DKKKKRSK
Sbjct: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAV-DKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKA 146
           REIQTAVRLVLPGELAKHAVSEGTKA
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKA 145

BLAST of Cp4.1LG16g05950 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-61
Identity = 134/147 (91.16%), Postives = 138/147 (93.88%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEKKPA+EKP EE KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  K
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAM 148
           REIQTAVRLVLPGELAKHAVSEGTKA+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAV 144

BLAST of Cp4.1LG16g05950 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 232.6 bits (592), Expect = 3.6e-61
Identity = 134/147 (91.16%), Postives = 137/147 (93.20%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAP+A+KKPAEKKPAAEKP EE KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  K
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAM 148
           REIQTAVRLVLPGELAKHAVSEGTKA+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAV 144

BLAST of Cp4.1LG16g05950 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 224.9 bits (572), Expect = 7.4e-59
Identity = 130/147 (88.44%), Postives = 137/147 (93.20%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAP+A+KKPAEKK AAE+P EE K+ AEKAPAEKKPKAGKKLP +     AGDKKKKRSK
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKA-AEKAPAEKKPKAGKKLPPK----EAGDKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAM 148
           REIQTAVRLVLPGELAKHAVSEGTKA+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAV 142

BLAST of Cp4.1LG16g05950 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-58
Identity = 129/147 (87.76%), Postives = 132/147 (89.80%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA+KKPAEKKP       E+KS AEKAPAEKKPKAGKKLPKE G  A GDKKKK  K
Sbjct: 1   MAPKAEKKPAEKKPV------EEKSKAEKAPAEKKPKAGKKLPKEAG--AGGDKKKKMKK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITS
Sbjct: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAM 148
           REIQTAVRLVLPGELAKHAVSEGTKA+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAV 139

BLAST of Cp4.1LG16g05950 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-57
Identity = 129/147 (87.76%), Postives = 134/147 (91.16%), Query Frame = 0

Query: 1   MAPKADKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAAGDKKKKRSK 60
           MAPKA KKPAEKKPA + PAEE+K VAEKAPAEKKPKAGKKLPKE       +KKKKR K
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEK-VAEKAPAEKKPKAGKKLPKE-AVTGGVEKKKKRVK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           KS ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITS
Sbjct: 61  KSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAM 148
           REIQTAVRLVLPGELAKHAVSEGTKA+
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAV 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O225825.9e-6191.84Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3[more]
P402832.9e-6091.16Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5[more]
O236295.0e-6091.16Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3[more]
Q1S9I96.6e-6090.48Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3[more]
Q1SWQ19.5e-5989.12Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3[more]
Match NameE-valueIdentityDescription
XP_023512034.11.41e-83100.00histone H2B.11 [Cucurbita pepo subsp. pepo][more]
XP_022943869.11.41e-83100.00histone H2B.11-like [Cucurbita moschata][more]
KAG6570724.11.70e-8365.04Histone H2B.6, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022986974.14.01e-8399.32histone H2B.11-like [Cucurbita maxima][more]
KAG7010568.14.67e-83100.00Histone H2B.6, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
A0A6J1FVH66.83e-84100.00Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111448469 PE=3 SV=1[more]
A0A6J1JHJ91.94e-8399.32Histone H2B OS=Cucurbita maxima OX=3661 GN=LOC111484551 PE=3 SV=1[more]
A0A0A0KHC93.22e-8297.26Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1[more]
A0A2G5CM596.71e-8295.21Histone H2B OS=Aquilegia coerulea OX=218851 GN=AQUCO_04500159v1 PE=3 SV=1[more]
A0A6J1G7281.31e-8197.26Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111451349 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G59910.12.1e-6191.16Histone superfamily protein [more]
AT3G45980.13.6e-6191.16Histone superfamily protein [more]
AT1G07790.17.4e-5988.44Histone superfamily protein [more]
AT3G46030.13.7e-5887.76Histone superfamily protein [more]
AT2G28720.11.1e-5787.76Histone superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 258..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availablePANTHERPTHR23428:SF282HISTONE H2Bcoord: 10..147
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 66..84
score: 80.55
coord: 85..105
score: 75.74
coord: 107..124
score: 76.51
coord: 124..137
score: 92.45
coord: 137..150
score: 70.07
IPR000558Histone H2BSMARTSM00427h2b3coord: 56..152
e-value: 1.7E-66
score: 236.9
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 10..147
IPR000558Histone H2BPROSITEPS00357HISTONE_H2Bcoord: 121..143
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 25..152
e-value: 1.8E-56
score: 191.5
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 39..148
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 10..129
e-value: 4.4E-22
score: 78.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g05950.1Cp4.1LG16g05950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity