Cp4.1LG16g05020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g05020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionCyclin-dependent kinases regulatory subunit
LocationCp4.1LG16: 6045725 .. 6051806 (+)
RNA-Seq ExpressionCp4.1LG16g05020
SyntenyCp4.1LG16g05020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGCGCCATTTTCGTGGGGTTGAGGAGAGCCCTAGCTCAGTTTGAGTTTGCTGTTCAGACATCGTTTCAGTTGGGCGATCGGAACCATTGAATGAATTAGCTTCATCTTCATAGTATTGTAATTGTCTCTGGAAGGTGAAGATTAAGCACTGACGGATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTCACGAGTATAGGTATTATCGTATTCTTACTCTCTCTCAGTTTCCAACTTTTTAGTTTCTTGCTGCCTTGGATGATTGTTGGAAGTGTTTAATTCTTTGTCTTCAATGGCTAACTGGTGATTGAAAAATTGATGCAGGCATGTGGTGCTCCCACCCGACGTGGCAAAGTTGCTGCCTAAGAATCGCCTGCTCTCTGAAGTAAGCAATTTGGTCTAAGTAATTTTGAATTTATGCATTTTAAGAATCGCCTCCTATCCTCGGATTGTTTCGGAAGAAAATTAATTTCAATAGTTGGATTCTTAAAACAGATTTAGGTATCGCTACTCTCTATTTTGTATGTCGACAATGAAAAATAAATGTATTACATTGAGACTCTGTAAGAAATTGTTATTATGCTGTGGATGGTTTTTCCTCTTCTTTCTAGTCTTAGTTTTCATATGATCTTGATATTCTCTCTTTGATTTGGCTGATGGTTGTATGAAAGTTGAAACGGTGTTTATGAATGTTTCGCATTGAGAATCAGGGGTTCATGAATGTTTCGCATTAGACTAGACCCCTCCTAGCTTGCCAATTGTGCATTCCCTCTATGCAATTAATGAGCAATAGGCGTCATGGTTGGGCACAGGCACAGGCACAGGCATATCATTATACCATCAATGTCTTTTAATATTCTTGAACTTGTAATCACTAAACTAAGCAAAGTTGTGCTTCCCAAATCTGTTTTGAGTACTCATTTAATGAAAGCGTATTGTTATACTCTTAGCCCTTTAATCCTTTGTGCAGAATGAGTGGCGTGCACTTGGAGTTCAGCAGAGTCGTGGATGGGTGCACTATGCTATTCATCGTCCCGAGCCACATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAAAACGTGCTTGCTGCTAAATGACATTATCAATAAAATGAGAGTCGATATTCAGTCATATAAATGGTTCTAAAATGAAAAACCGTCCTCAATTTCCTGGTTTCTGTGGTCAATCCTCCTGCTTAAAAAAAACTGCTGGAGTTTCTATGTTTACCTTGAACTCTGTATATACACGCTTCTGTATCTTTGCTGCACTCTGCAATTTTATGGATTTAGAACCTAAGTGAGGTATGATGAATCTTGATCCTCAACTTTCTGTGCAGAGGTGAATTATTTATACGTTTCATCTTTTGAGTAACTTCTCAATTTAATGGTTTTTAGAACGAAAGATGGGTTGTTTTATGAGGTTACATTATTTCTTCGTTTTTGCAAAATCCAGGCTTGAGAATTTGTACCACTTCAGCGAACTGCTTGCATATCAGAACTTGTGGAGGATCAGACCCCATGAGTTCTTTTGCAGCTATCATTTGGAAGGTGAAAAGGTGTAAATTTCGATTTGAATGAATCTCAACTGGCTGAATGTTGAAAAGGTTAGATCTCTCCCAATTCTTGATTTAGTATGCTTTCTCAATTTACTTGCTGCATCTTTGTTGGTTCTTTTCCTCGTCTTCATCTCAAAGAGGATATTCAATGCATTGAAAAATGTTAGAGCCATTCATTGGTCATAATGGAAATACAATTATACAATACAATACAAACCCATACTTCTAAGCCTACCATTGGGTGCATAATCGAAATACATCATACAGGGAAAAACACGGACAAGAAGACTATGGCACATAACGCTGTTTCAAATTGGAAAAGAAACTGTAAGAGAATCCTTCAGTTAGTAATGTAAACATCTTCAGAAGTCTGTAAGTCTAAGTTGCTTCTGTAATAACGCAGCCCTTCTTGCCTTAAGCTCTGCCTCTTCAATATGCAACAAAACCCATTTTTCATTCATATCCCTCAAACTCTTCTCCTCCATTCCCCTCAGCCCTTCTCTCCACACCCCATTTCCCGGAAACCGCCGAGAAAATTCACCCAAAAGAACGGGAAAGTCGTTCAGATCAACCCCCTTTGTGCTTGAGACTGACCTTTGTTTGATTCTCCGTGGAATTGCCCTTAAAATCGCCTGTGGTTTTGTTCTGGACGTGGGGGGTTTTCCCCAGATGCTTCGGCCGATCTCGAGAATTCGACGGTGGTGGGGAGTTTTGATTAAGGACTTAGTCCTTGCGAGTTTGTGGTACTGGAGTTTGAGCCTGTGGAGCTTATCGGCGATGTGGGAGTAGGTGAATTTTGGGCGGAGAGCGGTCTCGATGCGGTCCAAGGCCGGAGAGTCGAGAGTGGGCTGCGAATTGCTGGTGGGGTTTGCGGATCTGGCGATTTGGAGGTAGCAATTCAGGAGATTGAGCTCATCTTCTTCGGAGAAATGGGTTAGGGTTTCGGGAGAGGCGTTGGACGGTGGGAAACGGTGAGGCGTTGACATGGGGGGATGGCCTGTGGGAACTGGGATGAGATTGGAGTTTTTGTGGGCCTTCGTTTTGTTTGTTTGGGCAGTTCTGGTGAGAGCGTTGGAGAGGTAAAGGCTTCGGCCTCAAATTTGATCAGGGCGGGGGGGTCATTTTTAATTGGAGAAGGGAAAGAAACTTTCCCGCCCCATTCCCATCCATAAAGGGATCCGACGATGGGTAAGAGCCTGCATTATCATGTGAAGGTAAACTTTTGAACAATCATTTTTGAAATTATGATTGATGCCATTTTAATTTATTCTTAAGAAGATAAGATAATGGTTCATTTTTTGAAGCTGGAGAATTAAGTTTTTATTTCATTTTGGTTCAACTATAAAAAATACTTCATTTCAGGATTCGAACGATCGGTCTCGATTTTAGGAACCTAGGTACACTTTTATAGGGTATATTTCTTCAAAATTTTGGTTGGATTCATGAAATTTGAACATTTTCCTCAACATTTCCGGTGTTTCAAATGGCCAAACTAGAGTTTGTAAATTAGGGTTTCAATTTTAAGCACGTACTTTTGGCTCTTTTTCCTCGAAATTTGAGTTGAAATACTCGAATATTGACATTCCCCACAACAATGTGGAACAATATCGATCGAGACTCAGTTTTTTATTTCGTGCTATGATTGACTGAATTTGTGTTTCCAAATTAGGGTTTCAGTTTTAAGAACTTATATACACTTTTATATGCTATAATCTTTGAAATTTAGAAAATATTTTTAGTATCCTAACATGAATATGAATTGAGCATCCTAAAAAATATAAGTAGAGAAACGAGATACAACACACATATATAATTTTTTAAAAATTTAGGATAAATACACGTATGGGAGATCTTATAAATTAGAATTTTCAATTTTTTTTTTTTTTCTTTTCTCATTTGAGTGAGTCTAGAGTTTTAAAATAAAATAAAATTATTATGAAATAAGTCTTAAATTATTAACTATTTTTCGTAGTGAAAAAAAATGACATTTTTATTTTGAGAATGAAGTAATTTGGGGATTTCATTTCCACGCCCTGAGATGGTTCAAGGCTGAACCCGCAGATCAACAAATTCCTCATCAGGTCCCTCGCTTGCCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCAATTCCAAATCCATCGGTACGCTCAGCTTCTTCTCTTTTTCAGCTAGGGTTTTGTTCTTACTGTACTTTTTTGCTCAAGAATCTTGCCGACGCCGATGGAGAGTCATTTCCTTCTTTTCGTAATCCAAATCCGTTTTAGAATGCGTTTCTGCAGATTTGTTCAACTATCTTATATTTCTCATGTTTCGCGCTTCCTAAGATGGTGTTTTTCTTTCAATTAGTTTCTATGAACATTTTTTTTTACTGATTCTAATGGTTTTTTGGTCCCATGCGTAGACTTTGCACCTTCTAAGTTTATGAATTTCATTGTCAATTGTGGACGGAGTGGGAAAATATTAGTAATTTGCGTTTGCATTTCGTGCTAATTAAGGGAATAAAGTGCTGCGTGGTTCTCAAACATTTGTTCTTTTGTGTCTGTATCTGTGTATGTGTACATGGAGATGGAGGCTGAAGTTTCTCAGTTTAAGAGATTAGCTGCAAAAGTGTTATGATTTGCTCGTACTTGTGGACTTTTGTCACTTTCGTAATTACAGAAGTTTTCATTTCACATTTCGTGTTATGTAGATAACTACGGAATCTGGTCATTGTGATATTGTCCTTGTTTTGTTGTTCAATATAGCTGTTTTCGTAAGGTTCTCAAAGTCAGTCAGAGTATCTGATATATTTGTTTCCATCATGTTAGATGAACACAACTCTCCATGATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTCCCCAAAAGGCCTCATAGCAATGGAGAGAGTATTATTTGATTATAAACCCATGATCATTCCTTAAATTAGCCGATGTGGGACCTTCATCATCCAACACATCAAACATATTGTTGGCGAAAAATTTGGAAGATGTTCTTATCAATTGAGCATTGTTCACTGTATAGAGTTGGTATAGCATATCTACCATGTTGTTGAGCCTTGATTTGATTTGATTTCTGTTGAGCATTTCCTTCCATTCGTCAATTCAAGGTGGTTGGTGCTTTCTTGTAAGACAACTTTGTAGCTTAAGTTTACAGAATATCAATTGCTGTCGGCCTCTAAAATGTTCCTCTTCTTTTCCTTGCTGTCTTGGTTCTTGTGTTTTGTTCTCTCCTTTTCCTTTTGGCTGATGATGTGCACGTAAAGCCTTCTTGTTGCACTTTTTAGAACCAAAAGATCCGTCATTTACTAAAACTAAAAAAAGGAAGCAATCTGTCATATGTGCCAACTAGTTTCTGCCCTGCTCACTTCCAAACGGCAGACACATATTCCTATTAGAATTACTTGAAATTTTACCATATTGGATTTCTTTTTGGTATAATTTTCACTGATTTTATAGATGTTTGTATTCAGATCAGCTGTAGAAAACCCGATGACACGACGGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTAAGTACATGAACTCATGGCTGGTACTGACAATTTTATGCATTTGAACGAATGAATTTGCACGAGTTAATGTGAATAGGATTGATCATCCAGGTCTTCCAAAAAACCAGTTATAGATCCGGCAAGGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCTGACCATCAAACTTACACCAAGAAGTGATTTATCTTGAATGTTCCTGATGTGCCCTGTAAGTTGAATGTGTTAGTTCATTTTAAAGTAGAAGAAGACCACGTTAATTCTTTTTTCCCTCTTATGGAGAAACCAGCAGTTCACTTGACATAGGAATGAAGGATTAAAATATTGAGGTCCATATAGATAACAGAATTTCAATTTTACGAATTTGTCGGTATAAATATCATATCGACGAATATTTCTGTACATTATATTATAAATTTTGTTATTTTTTACTTATAAACTAAGAGATTCAGCTTTACAGGTCCAATCACGGCTTTCTGACGGATGCCTACTATATTGTGATGTTATGTGGTGGCACTCATGGTTGGGAATGCATAATGTGAGGTCGTGGGCGCCCATATACTACTTCAAACGGTCTTTCTTTCGTTGCCGAATGATAAACATTACATAAATGAGAAAAGGATAGGGAGAGATTTGAATACATGTTTGAGTCTTATAGTTACAACTTTGACAATAATTTTATAACAAACATTACACAAGGTAATGCTTCGGAAATCGGTCTCCATTTCGATACAAGTACGATGGTGCACAATACGCCCCTGTGACAATATCCATGTTTTGTTGAAGGTTGGTTTGTATGGGAAAAGTCAATCCGAAAACCCGAAAGCATGGGTTTATATTTGTTTAAATCATTTTTA

mRNA sequence

AATGCGCCATTTTCGTGGGGTTGAGGAGAGCCCTAGCTCAGTTTGAGTTTGCTGTTCAGACATCGTTTCAGTTGGGCGATCGGAACCATTGAATGAATTAGCTTCATCTTCATAGTATTGTAATTGTCTCTGGAAGGTGAAGATTAAGCACTGACGGATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTCACGAGTATAGGCATGTGGTGCTCCCACCCGACGTGGCAAAGTTGCTGCCTAAGAATCGCCTGCTCTCTGAAAATGAGTGGCGTGCACTTGGAGTTCAGCAGAGTCGTGGATGGGTGCACTATGCTATTCATCGTCCCGAGCCACATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAAAACGTGCTTGCTGCTAAATGACATTATCAATAAAATGAGAGTCGATATTCAGTCATATAAATGGTTCTAAAATGAAAAACCGTCCTCAATTTCCTGGTTTCTGTGGTCAATCCTCCTGCTTAAAAAAAACTGCTGGAGTTTCTATGTTTACCTTGAACTCTGTATATACACGCTTCTGTATCTTTGCTGCACTCTGCAATTTTATGGATTTAGAACCTAAGTGAGGTATGATGAATCTTGATCCTCAACTTTCTGTGCAGAGGCTTGAGAATTTGTACCACTTCAGCGAACTGCTTGCATATCAGAACTTGTGGAGGATCAGACCCCATGAGTTCTTTTGCAGCTATCATTTGGAAGGTGAAAAGGTGTAAATTTCGATTTGAATGAATCTCAACTGGCTGAATGTTGAAAAGGGAAAAACACGGACAAGAAGACTATGGCACATAACGCTGTTTCAAATTGGAAAAGAAACTGTAAGAGAATCCTTCAGTTAGTAATGTAAACATCTTCAGAAGTCTGTAAGTCTAAGTTGCTTCTGTAATAACGCAGCCCTTCTTGCCTTAAGCTCTGCCTCTTCAATATGCAACAAAACCCATTTTTCATTCATATCCCTCAAACTCTTCTCCTCCATTCCCCTCAGCCCTTCTCTCCACACCCCATTTCCCGGAAACCGCCGAGAAAATTCACCCAAAAGAACGGGAAAGTCGTTCAGATCAACCCCCTTTGTGCTTGAGACTGACCTTTGTTTGATTCTCCGTGGAATTGCCCTTAAAATCGCCTGTGGTTTTGTTCTGGACGTGGGGGGTTTTCCCCAGATGCTTCGGCCGATCTCGAGAATTCGACGGTGGTGGGGAGTTTTGATTAAGGACTTAGTCCTTGCGAGTTTGTGGTACTGGAGTTTGAGCCTGTGGAGCTTATCGGCGATGTGGGAGTAGGTGAATTTTGGGCGGAGAGCGGTCTCGATGCGGTCCAAGGCCGGAGAGTCGAGAGTGGGCTGCGAATTGCTGGTGGGGTTTGCGGATCTGGCGATTTGGAGGTAGCAATTCAGGAGATTGAGCTCATCTTCTTCGGAGAAATGGGTTAGGGTTTCGGGAGAGGCGTTGGACGGTGGGAAACGGTGAGGCGTTGACATGGGGGGATGGCCTGTGGGAACTGGGATGAGATTGGAGTTTTTGTGGGCCTTCGTTTTGTTTGTTTGGGCAGTTCTGGTGAGAGCGTTGGAGAGGTAAAGGCTTCGGCCTCAAATTTGATCAGGGCGGGGGGGTCATTTTTAATTGGAGAAGGGAAAGAAACTTTCCCGCCCCATTCCCATCCATAAAGGGATCCGACGATGGGTAAGAGCCTGCATTATCATGTGAAGTAATTTGGGGATTTCATTTCCACGCCCTGAGATGGTTCAAGGCTGAACCCGCAGATCAACAAATTCCTCATCAGGTCCCTCGCTTGCCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCAATTCCAAATCCATCGATCAGCTGTAGAAAACCCGATGACACGACGGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAACCAGTTATAGATCCGGCAAGGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCTGACCATCAAACTTACACCAAGAAGTGATTTATCTTGAATGTTCCTGATGTGCCCTGTCCAATCACGGCTTTCTGACGGATGCCTACTATATTGTGATGTTATGTGGTGGCACTCATGGTTGGGAATGCATAATGTGAGGTCGTGGGCGCCCATATACTACTTCAAACGGTCTTTCTTTCGTTGCCGAATGATAAACATTACATAAATGAGAAAAGGATAGGGAGAGATTTGAATACATGTTTGAGTCTTATAGTTACAACTTTGACAATAATTTTATAACAAACATTACACAAGGTAATGCTTCGGAAATCGGTCTCCATTTCGATACAAGTACGATGGTGCACAATACGCCCCTGTGACAATATCCATGTTTTGTTGAAGGTTGGTTTGTATGGGAAAAGTCAATCCGAAAACCCGAAAGCATGGGTTTATATTTGTTTAAATCATTTTTA

Coding sequence (CDS)

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTCACGAGTATAGGCATGTGGTGCTCCCACCCGACGTGGCAAAGTTGCTGCCTAAGAATCGCCTGCTCTCTGAAAATGAGTGGCGTGCACTTGGAGTTCAGCAGAGTCGTGGATGGGTGCACTATGCTATTCATCGTCCCGAGCCACATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAAAACGTGCTTGCTGCTAAATGA

Protein sequence

MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK
Homology
[Close]
BLAST of Cp4.1LG16g05020 vs. ExPASy Swiss-Prot
Match: O23249 (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-40
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD  EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQ 83
          EPHIMLFRRPLNYQQQQEN AQ
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQ 82

[Close]
BLAST of Cp4.1LG16g05020 vs. ExPASy Swiss-Prot
Match: A2XCH8 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-39
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]
BLAST of Cp4.1LG16g05020 vs. ExPASy Swiss-Prot
Match: Q6PS57 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-39
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]
BLAST of Cp4.1LG16g05020 vs. ExPASy Swiss-Prot
Match: Q9SJJ5 (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.9e-37
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD  EYRHVVLPP+VAKLLPKNR+LSE+EWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLNYQQ+ +
Sbjct: 61 EPHIMLFRRPLNYQQEHQ 78

[Close]
BLAST of Cp4.1LG16g05020 vs. ExPASy Swiss-Prot
Match: P55933 (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-28
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 4  IQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD  EYRHV+LPPDVAK +PKNRLLSE EWR LGVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]
BLAST of Cp4.1LG16g05020 vs. NCBI nr
Match: XP_022944260.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_023513375.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187 bits (476), Expect = 4.93e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]
BLAST of Cp4.1LG16g05020 vs. NCBI nr
Match: XP_022986411.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima])

HSP 1 Score: 186 bits (473), Expect = 1.41e-59
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
          EPHIMLFRRPLNYQQQQENLAQQN+LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNMLAAK 89

[Close]
BLAST of Cp4.1LG16g05020 vs. NCBI nr
Match: XP_038902899.1 (cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida])

HSP 1 Score: 183 bits (464), Expect = 3.34e-58
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDI+EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]
BLAST of Cp4.1LG16g05020 vs. NCBI nr
Match: XP_022957804.1 (cyclin-dependent kinases regulatory subunit 1 [Cucurbita moschata] >XP_022996399.1 cyclin-dependent kinases regulatory subunit 1 [Cucurbita maxima] >XP_023534106.1 cyclin-dependent kinases regulatory subunit 1 isoform X3 [Cucurbita pepo subsp. pepo] >KAG6606027.1 Cyclin-dependent kinases regulatory subunit 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035974.1 Cyclin-dependent kinases regulatory subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182 bits (463), Expect = 4.75e-58
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPDVAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]
BLAST of Cp4.1LG16g05020 vs. NCBI nr
Match: KAG7010670.1 (Cyclin-dependent kinases regulatory subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179 bits (455), Expect = 1.34e-56
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQN 84
          EPHIMLFRRPLNYQQQQENLAQQN
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQN 84

[Close]
BLAST of Cp4.1LG16g05020 vs. ExPASy TrEMBL
Match: A0A6J1FYK0 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC111448764 PE=3 SV=1)

HSP 1 Score: 187 bits (476), Expect = 2.39e-60
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]
BLAST of Cp4.1LG16g05020 vs. ExPASy TrEMBL
Match: A0A6J1JB14 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111484154 PE=3 SV=1)

HSP 1 Score: 186 bits (473), Expect = 6.84e-60
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
          EPHIMLFRRPLNYQQQQENLAQQN+LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNMLAAK 89

[Close]
BLAST of Cp4.1LG16g05020 vs. ExPASy TrEMBL
Match: A0A6J1K8L9 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111491633 PE=3 SV=1)

HSP 1 Score: 182 bits (463), Expect = 2.30e-58
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPDVAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]
BLAST of Cp4.1LG16g05020 vs. ExPASy TrEMBL
Match: A0A6J1H322 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC111459235 PE=3 SV=1)

HSP 1 Score: 182 bits (463), Expect = 2.30e-58
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPDVAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]
BLAST of Cp4.1LG16g05020 vs. ExPASy TrEMBL
Match: A0A5D3DKQ6 (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1754G00180 PE=3 SV=1)

HSP 1 Score: 177 bits (450), Expect = 2.22e-56
Identity = 83/89 (93.26%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDI+EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
          EPHIMLFRRPLNYQQQQEN  QQN LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89

[Close]
BLAST of Cp4.1LG16g05020 vs. TAIR 10
Match: AT2G27960.1 (cyclin-dependent kinase-subunit 1 )

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-41
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD  EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQ 83
          EPHIMLFRRPLNYQQQQEN AQ
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQ 82

[Close]
BLAST of Cp4.1LG16g05020 vs. TAIR 10
Match: AT2G27970.1 (CDK-subunit 2 )

HSP 1 Score: 153.7 bits (387), Expect = 7.0e-38
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD  EYRHVVLPP+VAKLLPKNR+LSE+EWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLNYQQ+ +
Sbjct: 61 EPHIMLFRRPLNYQQEHQ 78

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g05020 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O232491.9e-4092.68Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN... [more]
A2XCH83.6e-3991.36Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3... [more]
Q6PS573.6e-3991.36Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX... [more]
Q9SJJ59.9e-3787.18Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN... [more]
P559331.3e-2883.33Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX... [more]
BLAST of Cp4.1LG16g05020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022944260.14.93e-60100.00cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_0235... [more]
XP_022986411.11.41e-5998.88cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima][more]
XP_038902899.13.34e-5896.63cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida][more]
XP_022957804.14.75e-5896.63cyclin-dependent kinases regulatory subunit 1 [Cucurbita moschata] >XP_022996399... [more]
KAG7010670.11.34e-56100.00Cyclin-dependent kinases regulatory subunit 2 [Cucurbita argyrosperma subsp. arg... [more]
BLAST of Cp4.1LG16g05020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FYK02.39e-60100.00Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1JB146.84e-6098.88Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1K8L92.30e-5896.63Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1H3222.30e-5896.63Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A5D3DKQ62.22e-5693.26Cyclin-dependent kinases regulatory subunit OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of Cp4.1LG16g05020 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27960.11.4e-4192.68cyclin-dependent kinase-subunit 1 [more]
AT2G27970.17.0e-3887.18CDK-subunit 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000789Cyclin-dependent kinase, regulatory subunitPRINTSPR00296CYCLINKINASEcoord: 18..32
score: 62.05
coord: 3..17
score: 62.56
coord: 40..54
score: 79.49
coord: 55..69
score: 76.41
IPR000789Cyclin-dependent kinase, regulatory subunitSMARTSM01084CKS_2coord: 3..72
e-value: 2.8E-45
score: 166.4
IPR000789Cyclin-dependent kinase, regulatory subunitPFAMPF01111CKScoord: 4..70
e-value: 1.2E-34
score: 118.3
IPR036858Cyclin-dependent kinase, regulatory subunit superfamilyGENE3D3.30.170.10coord: 1..83
e-value: 5.6E-39
score: 134.4
IPR036858Cyclin-dependent kinase, regulatory subunit superfamilySUPERFAMILY55637Cell cycle regulatory proteinscoord: 1..83
NoneNo IPR availablePANTHERPTHR23415:SF29CYCLIN-DEPENDENT KINASES REGULATORY SUBUNITcoord: 1..86
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g05020.1Cp4.1LG16g05020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division
biological_process GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process GO:0007346 regulation of mitotic cell cycle
cellular_component GO:0000307 cyclin-dependent protein kinase holoenzyme complex
cellular_component GO:0019005 SCF ubiquitin ligase complex
molecular_function GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity
molecular_function GO:0042393 histone binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0019901 protein kinase binding
molecular_function GO:0043130 ubiquitin binding
molecular_function GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity