Cp4.1LG16g04320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g04320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG16: 5710413 .. 5710871 (-)
RNA-Seq ExpressionCp4.1LG16g04320
SyntenyCp4.1LG16g04320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATAGCTGTTTTAAAAGCAATAAAGTTATGGCGCAAGATGAATCTTGTTTGGCTTTGTCTAATTCGCCTCCTGTGGAAGCTAAGAAAGTAGAGGAGAAACCGGTGGCCGGATCGGCTATGGCGAAGCCGAAGACGGCAGAGGAGAGAAGCGGTGCGGCTGGAGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGACGAAAACTCCGGTGGAAGTGGCGGAGATGGAGACAGAGCCGGAGTATTGAGGATTAAAGTGGTGATGTCTCAGAGAGAGTTGAAGCAGATATTGAAGGAAAAAGAGAACAGTTCACGTTCGTTGGAGGAATTGATTGCTGAATTTAAGGTGAAAGGCAGAACGACGGTTTCAGATGCGAGAATCGATGAAGTTGAGGATGAAAATGGAAGCAGGAGGCCGGCTTTGGAATGTATTCCTGAAGGTCTCCACTAA

mRNA sequence

ATGGGGAATAGCTGTTTTAAAAGCAATAAAGTTATGGCGCAAGATGAATCTTGTTTGGCTTTGTCTAATTCGCCTCCTGTGGAAGCTAAGAAAGTAGAGGAGAAACCGGTGGCCGGATCGGCTATGGCGAAGCCGAAGACGGCAGAGGAGAGAAGCGGTGCGGCTGGAGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGACGAAAACTCCGGTGGAAGTGGCGGAGATGGAGACAGAGCCGGAGTATTGAGGATTAAAGTGGTGATGTCTCAGAGAGAGTTGAAGCAGATATTGAAGGAAAAAGAGAACAGTTCACGTTCGTTGGAGGAATTGATTGCTGAATTTAAGGTGAAAGGCAGAACGACGGTTTCAGATGCGAGAATCGATGAAGTTGAGGATGAAAATGGAAGCAGGAGGCCGGCTTTGGAATGTATTCCTGAAGGTCTCCACTAA

Coding sequence (CDS)

ATGGGGAATAGCTGTTTTAAAAGCAATAAAGTTATGGCGCAAGATGAATCTTGTTTGGCTTTGTCTAATTCGCCTCCTGTGGAAGCTAAGAAAGTAGAGGAGAAACCGGTGGCCGGATCGGCTATGGCGAAGCCGAAGACGGCAGAGGAGAGAAGCGGTGCGGCTGGAGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGACGAAAACTCCGGTGGAAGTGGCGGAGATGGAGACAGAGCCGGAGTATTGAGGATTAAAGTGGTGATGTCTCAGAGAGAGTTGAAGCAGATATTGAAGGAAAAAGAGAACAGTTCACGTTCGTTGGAGGAATTGATTGCTGAATTTAAGGTGAAAGGCAGAACGACGGTTTCAGATGCGAGAATCGATGAAGTTGAGGATGAAAATGGAAGCAGGAGGCCGGCTTTGGAATGTATTCCTGAAGGTCTCCACTAA

Protein sequence

MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAGGKKVVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKVKGRTTVSDARIDEVEDENGSRRPALECIPEGLH
Homology
BLAST of Cp4.1LG16g04320 vs. NCBI nr
Match: KAG6570883.1 (hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278 bits (711), Expect = 7.39e-94
Identity = 148/152 (97.37%), Postives = 148/152 (97.37%), Query Frame = 0

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAGGKKV 60
           MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAA GKKV
Sbjct: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAAGKKV 60

Query: 61  VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKVK 120
           VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKE ENSSRSLEELIAEFKVK
Sbjct: 61  VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKENENSSRSLEELIAEFKVK 120

Query: 121 GRTTVSDARIDEVEDENGSRRPALECIPEGLH 152
           GRTTVSDA  DEVEDENGSRRPALECIPEGLH
Sbjct: 121 GRTTVSDAITDEVEDENGSRRPALECIPEGLH 152

BLAST of Cp4.1LG16g04320 vs. NCBI nr
Match: XP_038902397.1 (uncharacterized protein LOC120089037 [Benincasa hispida])

HSP 1 Score: 181 bits (458), Expect = 2.32e-55
Identity = 106/150 (70.67%), Postives = 119/150 (79.33%), Query Frame = 0

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAGGKKV 60
           MGN+CFKSNKVMAQDE    L   PP+EAKKVEEKP  GSAMAKPKTAE R+G A  KKV
Sbjct: 1   MGNNCFKSNKVMAQDEPEDLL---PPIEAKKVEEKPRPGSAMAKPKTAEARTGGAS-KKV 60

Query: 61  VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKVK 120
           VRFKLQEE+E + G G      GVLRIKVVMSQ+ELKQ+LK++EN+S +LEELI E KVK
Sbjct: 61  VRFKLQEEEEKNSGDG------GVLRIKVVMSQKELKQMLKDRENNSCTLEELITELKVK 120

Query: 121 GRTTVSDARIDEVEDENGSRRPALECIPEG 150
           GRTT+SD RID VEDENG  +P LE IPEG
Sbjct: 121 GRTTISDGRIDAVEDENGRWKPDLEGIPEG 140

BLAST of Cp4.1LG16g04320 vs. NCBI nr
Match: XP_022140639.1 (uncharacterized protein LOC111011249 [Momordica charantia])

HSP 1 Score: 153 bits (386), Expect = 6.07e-44
Identity = 97/153 (63.40%), Postives = 115/153 (75.16%), Query Frame = 0

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAK-KVEEKPVAGSAMAKPKTAEERSGAAGGKK 60
           MGN C ++N+VMAQDE+C    NS   E   KVE+KP AGSA+A+PKT E R  AA  KK
Sbjct: 43  MGN-CLRNNRVMAQDEACSPSPNSSLTETNYKVEDKPAAGSALARPKTEEARI-AARRKK 102

Query: 61  VVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKV 120
           VVRF+ Q EDE SGG G      GVLRIKVV+SQ+ELKQILK++E++S +LEEL+AE K+
Sbjct: 103 VVRFQ-QREDEISGGGG------GVLRIKVVVSQKELKQILKDRESNSSTLEELLAELKM 162

Query: 121 KGRTTVSDARIDEVEDENGSRRPALECIPEGLH 152
           KGRT +SDAR D  EDENGS RPALE IPE LH
Sbjct: 163 KGRT-ISDARADNEEDENGSWRPALESIPEDLH 185

BLAST of Cp4.1LG16g04320 vs. NCBI nr
Match: KGN63254.1 (hypothetical protein Csa_022493 [Cucumis sativus])

HSP 1 Score: 149 bits (376), Expect = 6.28e-43
Identity = 91/153 (59.48%), Postives = 107/153 (69.93%), Query Frame = 0

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVAGSAMAKPKTAEERSGAAGG 60
           MGN CFKSNKVMAQD+S     + PP   +E KKV+++P+ GSAMAKPK     +G A G
Sbjct: 1   MGNICFKSNKVMAQDDS---YDDFPPHHLIEPKKVQQQPLPGSAMAKPKNG---TGGAAG 60

Query: 61  KKVVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEF 120
           KKVVRF LQEE+++  G        GVLRIKVV+SQ+ELKQILK +EN+S SLEELI E 
Sbjct: 61  KKVVRFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEEL 120

Query: 121 KVKGRTTVSDARIDEVEDENGSRRPALECIPEG 150
           KVKGR T   A      DE GS +PALECIPEG
Sbjct: 121 KVKGRATTVSA------DETGSWKPALECIPEG 141

BLAST of Cp4.1LG16g04320 vs. NCBI nr
Match: TYK24218.1 (hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (370), Expect = 5.27e-42
Identity = 94/155 (60.65%), Postives = 111/155 (71.61%), Query Frame = 0

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVA-GSAMAKPKTAEERSGAAG 60
           MGN CF++NKVMAQD+S     N PP   +EA+KVEE+P+  GSAMAKPK     +G A 
Sbjct: 1   MGNICFRTNKVMAQDDS---YDNLPPDQFIEAEKVEEQPLRPGSAMAKPKNG---TGGAA 60

Query: 61  GKKVVRFKLQEEDENSGG-SGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIA 120
           GKKVVRF LQEE+E+    + GD   AGVLRIKVV+SQ+ELK+ILK +EN+S SLEELI 
Sbjct: 61  GKKVVRFNLQEEEEDQEDRNSGDDSGAGVLRIKVVISQKELKEILKNRENNSCSLEELIE 120

Query: 121 EFKVKGRTTVSDARIDEVEDENGSRRPALECIPEG 150
           E KVKGR T        V DE GS +PALECIPEG
Sbjct: 121 ELKVKGRATT-------VSDEIGSWKPALECIPEG 142

BLAST of Cp4.1LG16g04320 vs. ExPASy TrEMBL
Match: A0A6J1CG85 (uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011249 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 2.94e-44
Identity = 97/153 (63.40%), Postives = 115/153 (75.16%), Query Frame = 0

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAK-KVEEKPVAGSAMAKPKTAEERSGAAGGKK 60
           MGN C ++N+VMAQDE+C    NS   E   KVE+KP AGSA+A+PKT E R  AA  KK
Sbjct: 43  MGN-CLRNNRVMAQDEACSPSPNSSLTETNYKVEDKPAAGSALARPKTEEARI-AARRKK 102

Query: 61  VVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKV 120
           VVRF+ Q EDE SGG G      GVLRIKVV+SQ+ELKQILK++E++S +LEEL+AE K+
Sbjct: 103 VVRFQ-QREDEISGGGG------GVLRIKVVVSQKELKQILKDRESNSSTLEELLAELKM 162

Query: 121 KGRTTVSDARIDEVEDENGSRRPALECIPEGLH 152
           KGRT +SDAR D  EDENGS RPALE IPE LH
Sbjct: 163 KGRT-ISDARADNEEDENGSWRPALESIPEDLH 185

BLAST of Cp4.1LG16g04320 vs. ExPASy TrEMBL
Match: A0A0A0LQE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 3.04e-43
Identity = 91/153 (59.48%), Postives = 107/153 (69.93%), Query Frame = 0

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVAGSAMAKPKTAEERSGAAGG 60
           MGN CFKSNKVMAQD+S     + PP   +E KKV+++P+ GSAMAKPK     +G A G
Sbjct: 1   MGNICFKSNKVMAQDDS---YDDFPPHHLIEPKKVQQQPLPGSAMAKPKNG---TGGAAG 60

Query: 61  KKVVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEF 120
           KKVVRF LQEE+++  G        GVLRIKVV+SQ+ELKQILK +EN+S SLEELI E 
Sbjct: 61  KKVVRFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEEL 120

Query: 121 KVKGRTTVSDARIDEVEDENGSRRPALECIPEG 150
           KVKGR T   A      DE GS +PALECIPEG
Sbjct: 121 KVKGRATTVSA------DETGSWKPALECIPEG 141

BLAST of Cp4.1LG16g04320 vs. ExPASy TrEMBL
Match: A0A5D3DKZ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00200 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 2.55e-42
Identity = 94/155 (60.65%), Postives = 111/155 (71.61%), Query Frame = 0

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVA-GSAMAKPKTAEERSGAAG 60
           MGN CF++NKVMAQD+S     N PP   +EA+KVEE+P+  GSAMAKPK     +G A 
Sbjct: 1   MGNICFRTNKVMAQDDS---YDNLPPDQFIEAEKVEEQPLRPGSAMAKPKNG---TGGAA 60

Query: 61  GKKVVRFKLQEEDENSGG-SGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIA 120
           GKKVVRF LQEE+E+    + GD   AGVLRIKVV+SQ+ELK+ILK +EN+S SLEELI 
Sbjct: 61  GKKVVRFNLQEEEEDQEDRNSGDDSGAGVLRIKVVISQKELKEILKNRENNSCSLEELIE 120

Query: 121 EFKVKGRTTVSDARIDEVEDENGSRRPALECIPEG 150
           E KVKGR T        V DE GS +PALECIPEG
Sbjct: 121 ELKVKGRATT-------VSDEIGSWKPALECIPEG 142

BLAST of Cp4.1LG16g04320 vs. ExPASy TrEMBL
Match: A0A7N2MA05 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.95e-16
Identity = 66/151 (43.71%), Postives = 86/151 (56.95%), Query Frame = 0

Query: 1   MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEE-KPVAGSAMAKPKTAEERSGAAGGKK 60
           MGN C  SNK +AQ+E         P EA+ VE+ KP   S +   K  +   G    KK
Sbjct: 1   MGN-CL-SNKSLAQEEEV-------PKEAEVVEQTKPSTASKLEPVKLVD--GGHKKKKK 60

Query: 61  VVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSS-RSLEELIAEFK 120
           VVRFKL+E+D N G S     R+GV+RI+VV++Q+ELKQIL  KE     S+E+L+    
Sbjct: 61  VVRFKLEEDDTNVGTSSEGDSRSGVVRIRVVVTQKELKQILDCKEGLKYSSVEQLVNALN 120

Query: 121 VKGRTTVSDARIDEVEDENGSRRPALECIPE 149
           ++GR        DE E  N + RPALE IPE
Sbjct: 121 LRGRKISEVRTSDEDEGINSNWRPALESIPE 140

BLAST of Cp4.1LG16g04320 vs. ExPASy TrEMBL
Match: A0A540LQ93 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_025785 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.62e-15
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 0

Query: 1   MGNSCFKSNKVMAQD-ESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAGGKK 60
           MGN    +NK+ +QD E   A   + P+EA+K        +AM  P   ++       KK
Sbjct: 1   MGNCLRNNNKIASQDYEKHEAAKEAEPLEARK--------TAMPLPSNLKQE------KK 60

Query: 61  VVRFKLQEEDENSGG--SGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRS-LEELIAE 120
            VRF LQE+ +NSG    GGD    G +RI++V++Q ELKQ+L  K++S+ S LEEL+  
Sbjct: 61  SVRFNLQEDHQNSGKRVDGGDSKTGGAVRIRLVVTQEELKQLLNYKKDSNHSSLEELLNA 120

Query: 121 FKVKGRTTVSDARIDEVEDENGSR----RPALECIPEGLH 152
            K +G T VS+      +DE+ S     RP LE IPE  H
Sbjct: 121 VKSRG-TRVSEINGTSSDDESISSGSCWRPTLESIPEDQH 145

BLAST of Cp4.1LG16g04320 vs. TAIR 10
Match: AT3G21680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 9.3e-06
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 63  FKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKVKGR 122
           F+ +EE E S       + + V+RIKVV++++EL+QIL  K N   S+++L+   K  GR
Sbjct: 35  FRGEEESERS-----TEEESKVVRIKVVVTKKELRQILGHK-NGINSIQQLVHVLKDSGR 94

Query: 123 TTVSDARIDEVEDENGSR--RPALECIPE 150
             +S A  +E E E G    RP LE IPE
Sbjct: 95  -NISMASYEEDEKEEGDENWRPTLESIPE 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6570883.17.39e-9497.37hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038902397.12.32e-5570.67uncharacterized protein LOC120089037 [Benincasa hispida][more]
XP_022140639.16.07e-4463.40uncharacterized protein LOC111011249 [Momordica charantia][more]
KGN63254.16.28e-4359.48hypothetical protein Csa_022493 [Cucumis sativus][more]
TYK24218.15.27e-4260.65hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A6J1CG852.94e-4463.40uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A0A0LQE93.04e-4359.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1[more]
A0A5D3DKZ82.55e-4260.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7N2MA051.95e-1643.71Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A540LQ934.62e-1539.38Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_025785 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G21680.19.3e-0640.45unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 93..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..81
NoneNo IPR availablePANTHERPTHR33148:SF55OS01G0219300 PROTEINcoord: 1..149
NoneNo IPR availablePANTHERPTHR33148PLASTID MOVEMENT IMPAIRED PROTEIN-RELATEDcoord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g04320.1Cp4.1LG16g04320.1mRNA