Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATAGCTGTTTTAAAAGCAATAAAGTTATGGCGCAAGATGAATCTTGTTTGGCTTTGTCTAATTCGCCTCCTGTGGAAGCTAAGAAAGTAGAGGAGAAACCGGTGGCCGGATCGGCTATGGCGAAGCCGAAGACGGCAGAGGAGAGAAGCGGTGCGGCTGGAGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGACGAAAACTCCGGTGGAAGTGGCGGAGATGGAGACAGAGCCGGAGTATTGAGGATTAAAGTGGTGATGTCTCAGAGAGAGTTGAAGCAGATATTGAAGGAAAAAGAGAACAGTTCACGTTCGTTGGAGGAATTGATTGCTGAATTTAAGGTGAAAGGCAGAACGACGGTTTCAGATGCGAGAATCGATGAAGTTGAGGATGAAAATGGAAGCAGGAGGCCGGCTTTGGAATGTATTCCTGAAGGTCTCCACTAA
mRNA sequence
ATGGGGAATAGCTGTTTTAAAAGCAATAAAGTTATGGCGCAAGATGAATCTTGTTTGGCTTTGTCTAATTCGCCTCCTGTGGAAGCTAAGAAAGTAGAGGAGAAACCGGTGGCCGGATCGGCTATGGCGAAGCCGAAGACGGCAGAGGAGAGAAGCGGTGCGGCTGGAGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGACGAAAACTCCGGTGGAAGTGGCGGAGATGGAGACAGAGCCGGAGTATTGAGGATTAAAGTGGTGATGTCTCAGAGAGAGTTGAAGCAGATATTGAAGGAAAAAGAGAACAGTTCACGTTCGTTGGAGGAATTGATTGCTGAATTTAAGGTGAAAGGCAGAACGACGGTTTCAGATGCGAGAATCGATGAAGTTGAGGATGAAAATGGAAGCAGGAGGCCGGCTTTGGAATGTATTCCTGAAGGTCTCCACTAA
Coding sequence (CDS)
ATGGGGAATAGCTGTTTTAAAAGCAATAAAGTTATGGCGCAAGATGAATCTTGTTTGGCTTTGTCTAATTCGCCTCCTGTGGAAGCTAAGAAAGTAGAGGAGAAACCGGTGGCCGGATCGGCTATGGCGAAGCCGAAGACGGCAGAGGAGAGAAGCGGTGCGGCTGGAGGTAAGAAGGTAGTGAGGTTTAAGCTACAAGAAGAAGACGAAAACTCCGGTGGAAGTGGCGGAGATGGAGACAGAGCCGGAGTATTGAGGATTAAAGTGGTGATGTCTCAGAGAGAGTTGAAGCAGATATTGAAGGAAAAAGAGAACAGTTCACGTTCGTTGGAGGAATTGATTGCTGAATTTAAGGTGAAAGGCAGAACGACGGTTTCAGATGCGAGAATCGATGAAGTTGAGGATGAAAATGGAAGCAGGAGGCCGGCTTTGGAATGTATTCCTGAAGGTCTCCACTAA
Protein sequence
MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAGGKKVVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKVKGRTTVSDARIDEVEDENGSRRPALECIPEGLH
Homology
BLAST of Cp4.1LG16g04320 vs. NCBI nr
Match:
KAG6570883.1 (hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 278 bits (711), Expect = 7.39e-94
Identity = 148/152 (97.37%), Postives = 148/152 (97.37%), Query Frame = 0
Query: 1 MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAGGKKV 60
MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAA GKKV
Sbjct: 1 MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAAGKKV 60
Query: 61 VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKVK 120
VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKE ENSSRSLEELIAEFKVK
Sbjct: 61 VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKENENSSRSLEELIAEFKVK 120
Query: 121 GRTTVSDARIDEVEDENGSRRPALECIPEGLH 152
GRTTVSDA DEVEDENGSRRPALECIPEGLH
Sbjct: 121 GRTTVSDAITDEVEDENGSRRPALECIPEGLH 152
BLAST of Cp4.1LG16g04320 vs. NCBI nr
Match:
XP_038902397.1 (uncharacterized protein LOC120089037 [Benincasa hispida])
HSP 1 Score: 181 bits (458), Expect = 2.32e-55
Identity = 106/150 (70.67%), Postives = 119/150 (79.33%), Query Frame = 0
Query: 1 MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAGGKKV 60
MGN+CFKSNKVMAQDE L PP+EAKKVEEKP GSAMAKPKTAE R+G A KKV
Sbjct: 1 MGNNCFKSNKVMAQDEPEDLL---PPIEAKKVEEKPRPGSAMAKPKTAEARTGGAS-KKV 60
Query: 61 VRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKVK 120
VRFKLQEE+E + G G GVLRIKVVMSQ+ELKQ+LK++EN+S +LEELI E KVK
Sbjct: 61 VRFKLQEEEEKNSGDG------GVLRIKVVMSQKELKQMLKDRENNSCTLEELITELKVK 120
Query: 121 GRTTVSDARIDEVEDENGSRRPALECIPEG 150
GRTT+SD RID VEDENG +P LE IPEG
Sbjct: 121 GRTTISDGRIDAVEDENGRWKPDLEGIPEG 140
BLAST of Cp4.1LG16g04320 vs. NCBI nr
Match:
XP_022140639.1 (uncharacterized protein LOC111011249 [Momordica charantia])
HSP 1 Score: 153 bits (386), Expect = 6.07e-44
Identity = 97/153 (63.40%), Postives = 115/153 (75.16%), Query Frame = 0
Query: 1 MGNSCFKSNKVMAQDESCLALSNSPPVEAK-KVEEKPVAGSAMAKPKTAEERSGAAGGKK 60
MGN C ++N+VMAQDE+C NS E KVE+KP AGSA+A+PKT E R AA KK
Sbjct: 43 MGN-CLRNNRVMAQDEACSPSPNSSLTETNYKVEDKPAAGSALARPKTEEARI-AARRKK 102
Query: 61 VVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKV 120
VVRF+ Q EDE SGG G GVLRIKVV+SQ+ELKQILK++E++S +LEEL+AE K+
Sbjct: 103 VVRFQ-QREDEISGGGG------GVLRIKVVVSQKELKQILKDRESNSSTLEELLAELKM 162
Query: 121 KGRTTVSDARIDEVEDENGSRRPALECIPEGLH 152
KGRT +SDAR D EDENGS RPALE IPE LH
Sbjct: 163 KGRT-ISDARADNEEDENGSWRPALESIPEDLH 185
BLAST of Cp4.1LG16g04320 vs. NCBI nr
Match:
KGN63254.1 (hypothetical protein Csa_022493 [Cucumis sativus])
HSP 1 Score: 149 bits (376), Expect = 6.28e-43
Identity = 91/153 (59.48%), Postives = 107/153 (69.93%), Query Frame = 0
Query: 1 MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVAGSAMAKPKTAEERSGAAGG 60
MGN CFKSNKVMAQD+S + PP +E KKV+++P+ GSAMAKPK +G A G
Sbjct: 1 MGNICFKSNKVMAQDDS---YDDFPPHHLIEPKKVQQQPLPGSAMAKPKNG---TGGAAG 60
Query: 61 KKVVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEF 120
KKVVRF LQEE+++ G GVLRIKVV+SQ+ELKQILK +EN+S SLEELI E
Sbjct: 61 KKVVRFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEEL 120
Query: 121 KVKGRTTVSDARIDEVEDENGSRRPALECIPEG 150
KVKGR T A DE GS +PALECIPEG
Sbjct: 121 KVKGRATTVSA------DETGSWKPALECIPEG 141
BLAST of Cp4.1LG16g04320 vs. NCBI nr
Match:
TYK24218.1 (hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa])
HSP 1 Score: 147 bits (370), Expect = 5.27e-42
Identity = 94/155 (60.65%), Postives = 111/155 (71.61%), Query Frame = 0
Query: 1 MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVA-GSAMAKPKTAEERSGAAG 60
MGN CF++NKVMAQD+S N PP +EA+KVEE+P+ GSAMAKPK +G A
Sbjct: 1 MGNICFRTNKVMAQDDS---YDNLPPDQFIEAEKVEEQPLRPGSAMAKPKNG---TGGAA 60
Query: 61 GKKVVRFKLQEEDENSGG-SGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIA 120
GKKVVRF LQEE+E+ + GD AGVLRIKVV+SQ+ELK+ILK +EN+S SLEELI
Sbjct: 61 GKKVVRFNLQEEEEDQEDRNSGDDSGAGVLRIKVVISQKELKEILKNRENNSCSLEELIE 120
Query: 121 EFKVKGRTTVSDARIDEVEDENGSRRPALECIPEG 150
E KVKGR T V DE GS +PALECIPEG
Sbjct: 121 ELKVKGRATT-------VSDEIGSWKPALECIPEG 142
BLAST of Cp4.1LG16g04320 vs. ExPASy TrEMBL
Match:
A0A6J1CG85 (uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011249 PE=4 SV=1)
HSP 1 Score: 153 bits (386), Expect = 2.94e-44
Identity = 97/153 (63.40%), Postives = 115/153 (75.16%), Query Frame = 0
Query: 1 MGNSCFKSNKVMAQDESCLALSNSPPVEAK-KVEEKPVAGSAMAKPKTAEERSGAAGGKK 60
MGN C ++N+VMAQDE+C NS E KVE+KP AGSA+A+PKT E R AA KK
Sbjct: 43 MGN-CLRNNRVMAQDEACSPSPNSSLTETNYKVEDKPAAGSALARPKTEEARI-AARRKK 102
Query: 61 VVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKV 120
VVRF+ Q EDE SGG G GVLRIKVV+SQ+ELKQILK++E++S +LEEL+AE K+
Sbjct: 103 VVRFQ-QREDEISGGGG------GVLRIKVVVSQKELKQILKDRESNSSTLEELLAELKM 162
Query: 121 KGRTTVSDARIDEVEDENGSRRPALECIPEGLH 152
KGRT +SDAR D EDENGS RPALE IPE LH
Sbjct: 163 KGRT-ISDARADNEEDENGSWRPALESIPEDLH 185
BLAST of Cp4.1LG16g04320 vs. ExPASy TrEMBL
Match:
A0A0A0LQE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1)
HSP 1 Score: 149 bits (376), Expect = 3.04e-43
Identity = 91/153 (59.48%), Postives = 107/153 (69.93%), Query Frame = 0
Query: 1 MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVAGSAMAKPKTAEERSGAAGG 60
MGN CFKSNKVMAQD+S + PP +E KKV+++P+ GSAMAKPK +G A G
Sbjct: 1 MGNICFKSNKVMAQDDS---YDDFPPHHLIEPKKVQQQPLPGSAMAKPKNG---TGGAAG 60
Query: 61 KKVVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEF 120
KKVVRF LQEE+++ G GVLRIKVV+SQ+ELKQILK +EN+S SLEELI E
Sbjct: 61 KKVVRFNLQEEEKDEEGRNSGDSGPGVLRIKVVISQKELKQILKSRENNSCSLEELIEEL 120
Query: 121 KVKGRTTVSDARIDEVEDENGSRRPALECIPEG 150
KVKGR T A DE GS +PALECIPEG
Sbjct: 121 KVKGRATTVSA------DETGSWKPALECIPEG 141
BLAST of Cp4.1LG16g04320 vs. ExPASy TrEMBL
Match:
A0A5D3DKZ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00200 PE=4 SV=1)
HSP 1 Score: 147 bits (370), Expect = 2.55e-42
Identity = 94/155 (60.65%), Postives = 111/155 (71.61%), Query Frame = 0
Query: 1 MGNSCFKSNKVMAQDESCLALSNSPP---VEAKKVEEKPVA-GSAMAKPKTAEERSGAAG 60
MGN CF++NKVMAQD+S N PP +EA+KVEE+P+ GSAMAKPK +G A
Sbjct: 1 MGNICFRTNKVMAQDDS---YDNLPPDQFIEAEKVEEQPLRPGSAMAKPKNG---TGGAA 60
Query: 61 GKKVVRFKLQEEDENSGG-SGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIA 120
GKKVVRF LQEE+E+ + GD AGVLRIKVV+SQ+ELK+ILK +EN+S SLEELI
Sbjct: 61 GKKVVRFNLQEEEEDQEDRNSGDDSGAGVLRIKVVISQKELKEILKNRENNSCSLEELIE 120
Query: 121 EFKVKGRTTVSDARIDEVEDENGSRRPALECIPEG 150
E KVKGR T V DE GS +PALECIPEG
Sbjct: 121 ELKVKGRATT-------VSDEIGSWKPALECIPEG 142
BLAST of Cp4.1LG16g04320 vs. ExPASy TrEMBL
Match:
A0A7N2MA05 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 1.95e-16
Identity = 66/151 (43.71%), Postives = 86/151 (56.95%), Query Frame = 0
Query: 1 MGNSCFKSNKVMAQDESCLALSNSPPVEAKKVEE-KPVAGSAMAKPKTAEERSGAAGGKK 60
MGN C SNK +AQ+E P EA+ VE+ KP S + K + G KK
Sbjct: 1 MGN-CL-SNKSLAQEEEV-------PKEAEVVEQTKPSTASKLEPVKLVD--GGHKKKKK 60
Query: 61 VVRFKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSS-RSLEELIAEFK 120
VVRFKL+E+D N G S R+GV+RI+VV++Q+ELKQIL KE S+E+L+
Sbjct: 61 VVRFKLEEDDTNVGTSSEGDSRSGVVRIRVVVTQKELKQILDCKEGLKYSSVEQLVNALN 120
Query: 121 VKGRTTVSDARIDEVEDENGSRRPALECIPE 149
++GR DE E N + RPALE IPE
Sbjct: 121 LRGRKISEVRTSDEDEGINSNWRPALESIPE 140
BLAST of Cp4.1LG16g04320 vs. ExPASy TrEMBL
Match:
A0A540LQ93 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_025785 PE=4 SV=1)
HSP 1 Score: 77.4 bits (189), Expect = 4.62e-15
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 0
Query: 1 MGNSCFKSNKVMAQD-ESCLALSNSPPVEAKKVEEKPVAGSAMAKPKTAEERSGAAGGKK 60
MGN +NK+ +QD E A + P+EA+K +AM P ++ KK
Sbjct: 1 MGNCLRNNNKIASQDYEKHEAAKEAEPLEARK--------TAMPLPSNLKQE------KK 60
Query: 61 VVRFKLQEEDENSGG--SGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRS-LEELIAE 120
VRF LQE+ +NSG GGD G +RI++V++Q ELKQ+L K++S+ S LEEL+
Sbjct: 61 SVRFNLQEDHQNSGKRVDGGDSKTGGAVRIRLVVTQEELKQLLNYKKDSNHSSLEELLNA 120
Query: 121 FKVKGRTTVSDARIDEVEDENGSR----RPALECIPEGLH 152
K +G T VS+ +DE+ S RP LE IPE H
Sbjct: 121 VKSRG-TRVSEINGTSSDDESISSGSCWRPTLESIPEDQH 145
BLAST of Cp4.1LG16g04320 vs. TAIR 10
Match:
AT3G21680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 47.8 bits (112), Expect = 9.3e-06
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 0
Query: 63 FKLQEEDENSGGSGGDGDRAGVLRIKVVMSQRELKQILKEKENSSRSLEELIAEFKVKGR 122
F+ +EE E S + + V+RIKVV++++EL+QIL K N S+++L+ K GR
Sbjct: 35 FRGEEESERS-----TEEESKVVRIKVVVTKKELRQILGHK-NGINSIQQLVHVLKDSGR 94
Query: 123 TTVSDARIDEVEDENGSR--RPALECIPE 150
+S A +E E E G RP LE IPE
Sbjct: 95 -NISMASYEEDEKEEGDENWRPTLESIPE 116
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6570883.1 | 7.39e-94 | 97.37 | hypothetical protein SDJN03_29798, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_038902397.1 | 2.32e-55 | 70.67 | uncharacterized protein LOC120089037 [Benincasa hispida] | [more] |
XP_022140639.1 | 6.07e-44 | 63.40 | uncharacterized protein LOC111011249 [Momordica charantia] | [more] |
KGN63254.1 | 6.28e-43 | 59.48 | hypothetical protein Csa_022493 [Cucumis sativus] | [more] |
TYK24218.1 | 5.27e-42 | 60.65 | hypothetical protein E5676_scaffold27G00200 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1CG85 | 2.94e-44 | 63.40 | uncharacterized protein LOC111011249 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
A0A0A0LQE9 | 3.04e-43 | 59.48 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418890 PE=4 SV=1 | [more] |
A0A5D3DKZ8 | 2.55e-42 | 60.65 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A7N2MA05 | 1.95e-16 | 43.71 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
A0A540LQ93 | 4.62e-15 | 39.38 | Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_025785 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G21680.1 | 9.3e-06 | 40.45 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... | [more] |