Cp4.1LG16g03860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g03860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	nuclear transcription factor Y subunit B-3-like
Location	Cp4.1LG16: 5421766 .. 5422371 (-)
RNA-Seq Expression	Cp4.1LG16g03860
Synteny	Cp4.1LG16g03860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAATCGGATAACGAATCGGGAGGGCACAACAGCAACGCGAACAGCGAGTTGTCTGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACGGTACAAGAGTGCGTGTCGGAGTTTATAAGCTTCATAACAGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAAAAGTACAGAGAATTGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTAGTGGTGGTGGTGGTGGGCCCAGCGGCAGTGGTGCTAGTGGTGGAGTCAACTCTAGTACTGGTGGTGGTGGTGTTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGCAGTGGTGGTGGATATCATCACATGGGAATCGGCGGAGGGAAGGAAGGAAATAGTGGTTCCGGGTAG

mRNA sequence

ATGGCGGAATCGGATAACGAATCGGGAGGGCACAACAGCAACGCGAACAGCGAGTTGTCTGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACGGTACAAGAGTGCGTGTCGGAGTTTATAAGCTTCATAACAGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAAAAGTACAGAGAATTGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTAGTGGTGGTGGTGGTGGGCCCAGCGGCAGTGGTGCTAGTGGTGGAGTCAACTCTAGTACTGGTGGTGGTGGTGTTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGCAGTGGTGGTGGATATCATCACATGGGAATCGGCGGAGGGAAGGAAGGAAATAGTGGTTCCGGGTAG

Coding sequence (CDS)

ATGGCGGAATCGGATAACGAATCGGGAGGGCACAACAGCAACGCGAACAGCGAGTTGTCTGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACGGTACAAGAGTGCGTGTCGGAGTTTATAAGCTTCATAACAGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAAAAGTACAGAGAATTGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTAGTGGTGGTGGTGGTGGGCCCAGCGGCAGTGGTGCTAGTGGTGGAGTCAACTCTAGTACTGGTGGTGGTGGTGTTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGCAGTGGTGGTGGATATCATCACATGGGAATCGGCGGAGGGAAGGAAGGAAATAGTGGTTCCGGGTAG

Protein sequence

MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTMGRQGEKDGSGGGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYGSGGGYHHMGIGGGKEGNSGSG

Homology

[Close]

BLAST of Cp4.1LG16g03860 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.4e-54
Identity = 123/151 (81.46%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 MGRQGEKDGSGGGGGPSGSGASGGVNSSTGG 151
            GRQG+K+G GGGGG +GSG SGG     GG
Sbjct: 121 AGRQGDKEGGGGGGG-AGSG-SGGAPMYGGG 147

[Close]

BLAST of Cp4.1LG16g03860 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-45
Identity = 133/215 (61.86%), Postives = 144/215 (66.98%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           M +SDNESGG  SNA    SA+EQDRFLPIANVSRIMK+ALPANAKISKDAKETVQECVS
Sbjct: 1   MPDSDNESGG-PSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+Y++PLK YL K+RELEGEK+ +
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKA-I 120

Query: 121 GRQGEKDGSGGGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMG-------- 180
           G  G   G     G SGSG SG  +        GG G  G GG  G +MMMG        
Sbjct: 121 GAAGSGGGGAASSGGSGSG-SGSHHHQDASRNNGGYGMYGGGG--GMIMMMGQPMYGSPP 180

Query: 181 --------------HHQGGVYGSGGGYHHMGIGGG 194
                         HH   V G  G Y H G GGG
Sbjct: 181 ASSAGYAQPPPPHHHHHQMVMGGKGAYGHGGGGGG 210

[Close]

BLAST of Cp4.1LG16g03860 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.2e-43
Identity = 123/202 (60.89%), Postives = 141/202 (69.80%), Query Frame = 0


Query: 1   MAESDNESG----GHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M +SD +SG    G+N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGRQGEKDGSGGGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQG 180
           ++ +GR      +GG  G     A G      GGG  GGGG    G  Y       H Q 
Sbjct: 121 RTGLGR----PQTGGEVGEHQRDAVG-----DGGGFYGGGG----GMQYHQHHQFLHQQN 180

Query: 181 GVYGSGGGYHHMGIGGGKEGNS 199
            +YG+ GG    G GG   G +
Sbjct: 181 HMYGATGGGSDSG-GGAASGRT 188

[Close]

BLAST of Cp4.1LG16g03860 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.5e-43
Identity = 127/221 (57.47%), Postives = 145/221 (65.61%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSA-KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           M +SDN+SGG ++ A  ELS+ +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YV+PLK YL K+RE+EGE++ 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERAA 120

Query: 121 MGRQGEKDGSGGGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMM-------- 180
                    S  G G S +  +      T     G  G+   G   GGMMMM        
Sbjct: 121 --------ASTTGAGTSAASTTPPQQQHTANAAGGYAGYAAPGAGPGGMMMMMGQPMYGS 180

Query: 181 ----------GHHQGGVYGSGG-GYHHMGIGGGKEGNSGSG 202
                      HH   + G GG G+H  G GGG   +SG G
Sbjct: 181 PPPPPQQQQQQHHHMAMGGRGGFGHHPGGGGGGSSSSSGHG 213

[Close]

BLAST of Cp4.1LG16g03860 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.9e-37
Identity = 112/194 (57.73%), Postives = 131/194 (67.53%), Query Frame = 0


Query: 11  HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEA 70
           +      +  AKEQDRFLPIANVSRIMK++LPANAKISK++KETVQECVSEFISF+TGEA
Sbjct: 46  YGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEA 105

Query: 71  SDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTMGRQGEKDGSG 130
           SDKCQREKRKTINGDDLLWAMTTLGFE YV PLK+YL +YRE EGEK+        D  G
Sbjct: 106 SDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKA--------DVLG 165

Query: 131 GGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYGSGGGYHHMGI 190
           G GG + +    G     GGGG  G   +G   + GG  +   H G     GGG   + +
Sbjct: 166 GAGGAAAARHGEGGCCGGGGGGADGVVIDGHYPLAGG--LSHSHHGHQQQDGGGDVGLMM 225

Query: 191 GGGKEG---NSGSG 202
           GGG  G   N+G+G
Sbjct: 226 GGGDAGVGYNAGAG 229

[Close]

BLAST of Cp4.1LG16g03860 vs. NCBI nr
Match: XP_023513391.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364 bits (934), Expect = 2.99e-126
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120

Query: 121 GRQGEKDGSGGGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYG 180
           GRQGEKDGSGGGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYG
Sbjct: 121 GRQGEKDGSGGGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYG 180

Query: 181 SGGGYHHMGIGGGKEGNSGSG 201
           SGGGYHHMGIGGGKEGNSGSG
Sbjct: 181 SGGGYHHMGIGGGKEGNSGSG 201

[Close]

BLAST of Cp4.1LG16g03860 vs. NCBI nr
Match: XP_022943898.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6570947.1 Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350 bits (898), Expect = 9.19e-121
Identity = 198/201 (98.51%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120

Query: 121 GRQGEKDGSGGGGGPSGSGASGGVNSSTGGGG-VGGGGFNGVGGMYGGMMMMGHHQGGVY 180
           GRQGEKDGSGGGG PSGSGASGGVNSSTGGGG VGGGGFNGVGGMYGGMMMMGHHQGGVY
Sbjct: 121 GRQGEKDGSGGGG-PSGSGASGGVNSSTGGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVY 180

Query: 181 GSGGGYHHMGIGGGKEGNSGS 200
           GS GGYHHMGIGGGKEGNSGS
Sbjct: 181 GSSGGYHHMGIGGGKEGNSGS 200

[Close]

BLAST of Cp4.1LG16g03860 vs. NCBI nr
Match: XP_022985725.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita maxima])

HSP 1 Score: 344 bits (883), Expect = 1.91e-118
Identity = 196/203 (96.55%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120

Query: 121 GRQGEKDGSGGGGGPSGSGASGG---VNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGG 180
            RQGEKDGSGGGG P GSGASGG   VNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGG
Sbjct: 121 VRQGEKDGSGGGG-PGGSGASGGGGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGG 180

Query: 181 VYGSGGGYHHMGIGGGKEGNSGS 200
           VYGS GGYHHMGIGGGKEGNSGS
Sbjct: 181 VYGSSGGYHHMGIGGGKEGNSGS 202

[Close]

BLAST of Cp4.1LG16g03860 vs. NCBI nr
Match: XP_023532503.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319 bits (818), Expect = 1.75e-108
Identity = 185/205 (90.24%), Postives = 191/205 (93.17%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYRE+EGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GR-QGEKDGSGGGGGPSGSGAS---GGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQG 180
           G  +GEKDG GGGGGP GSGA+   GGVN  TGGG V GGGFNGVGGMYGGMMMMGHHQG
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGG-VSGGGFNGVGGMYGGMMMMGHHQG 180

Query: 181 GVYGSGGGYHHMGIGGGKEGNSGSG 201
           GVYGSGG +HHMGIGGGK GN GSG
Sbjct: 181 GVYGSGG-FHHMGIGGGKGGNGGSG 203

[Close]

BLAST of Cp4.1LG16g03860 vs. NCBI nr
Match: XP_022947534.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6604918.1 Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315 bits (807), Expect = 9.22e-107
Identity = 184/208 (88.46%), Postives = 190/208 (91.35%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYRE+EGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GR-QGEKDGSGGGGGPSGSGAS------GGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGH 180
           G  +GEKDG GGGGGP GSGA+      GGVN  TGGG V GGGFNGVGGMYGGMMMMGH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGG-VSGGGFNGVGGMYGGMMMMGH 180

Query: 181 HQGGVYGSGGGYHHMGIGGGKEGNSGSG 201
           HQGGVYGSGG +H MGIGGGK GN GSG
Sbjct: 181 HQGGVYGSGG-FHQMGIGGGKGGNGGSG 206

[Close]

BLAST of Cp4.1LG16g03860 vs. ExPASy TrEMBL
Match: A0A6J1FXH2 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN=LOC111448486 PE=3 SV=1)

HSP 1 Score: 350 bits (898), Expect = 4.45e-121
Identity = 198/201 (98.51%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120

Query: 121 GRQGEKDGSGGGGGPSGSGASGGVNSSTGGGG-VGGGGFNGVGGMYGGMMMMGHHQGGVY 180
           GRQGEKDGSGGGG PSGSGASGGVNSSTGGGG VGGGGFNGVGGMYGGMMMMGHHQGGVY
Sbjct: 121 GRQGEKDGSGGGG-PSGSGASGGVNSSTGGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVY 180

Query: 181 GSGGGYHHMGIGGGKEGNSGS 200
           GS GGYHHMGIGGGKEGNSGS
Sbjct: 181 GSSGGYHHMGIGGGKEGNSGS 200

[Close]

BLAST of Cp4.1LG16g03860 vs. ExPASy TrEMBL
Match: A0A6J1JC44 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111483695 PE=3 SV=1)

HSP 1 Score: 344 bits (883), Expect = 9.23e-119
Identity = 196/203 (96.55%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120

Query: 121 GRQGEKDGSGGGGGPSGSGASGG---VNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGG 180
            RQGEKDGSGGGG P GSGASGG   VNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGG
Sbjct: 121 VRQGEKDGSGGGG-PGGSGASGGGGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGG 180

Query: 181 VYGSGGGYHHMGIGGGKEGNSGS 200
           VYGS GGYHHMGIGGGKEGNSGS
Sbjct: 181 VYGSSGGYHHMGIGGGKEGNSGS 202

[Close]

BLAST of Cp4.1LG16g03860 vs. ExPASy TrEMBL
Match: A0A6J1G731 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN=LOC111451370 PE=3 SV=1)

HSP 1 Score: 315 bits (807), Expect = 4.46e-107
Identity = 184/208 (88.46%), Postives = 190/208 (91.35%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYRE+EGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GR-QGEKDGSGGGGGPSGSGAS------GGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGH 180
           G  +GEKDG GGGGGP GSGA+      GGVN  TGGG V GGGFNGVGGMYGGMMMMGH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGG-VSGGGFNGVGGMYGGMMMMGH 180

Query: 181 HQGGVYGSGGGYHHMGIGGGKEGNSGSG 201
           HQGGVYGSGG +H MGIGGGK GN GSG
Sbjct: 181 HQGGVYGSGG-FHQMGIGGGKGGNGGSG 206

[Close]

BLAST of Cp4.1LG16g03860 vs. ExPASy TrEMBL
Match: A0A6J1I2E0 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111469875 PE=3 SV=1)

HSP 1 Score: 315 bits (806), Expect = 6.34e-107
Identity = 184/208 (88.46%), Postives = 190/208 (91.35%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYRE+EGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GR-QGEKDGSGGGGGPSGSGAS------GGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGH 180
           G  +GEKDG GGGGGP GSGA+      GGVN  TGGG V GGGFNGVGGMYGGMMMM H
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGG-VSGGGFNGVGGMYGGMMMMVH 180

Query: 181 HQGGVYGSGGGYHHMGIGGGKEGNSGSG 201
           HQGGVYGSGG +HHMGIGGGK GN GSG
Sbjct: 181 HQGGVYGSGG-FHHMGIGGGKGGNGGSG 206

[Close]

BLAST of Cp4.1LG16g03860 vs. ExPASy TrEMBL
Match: A0A1S3CMC5 (nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC103502105 PE=3 SV=1)

HSP 1 Score: 309 bits (791), Expect = 8.63e-105
Identity = 179/201 (89.05%), Postives = 185/201 (92.04%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRE+EGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGSGGGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYG 180
           GRQGEKDG  GGGGP GSG  GGVNSS    G  GGG+NGVGGMYGG+MMMGHHQGGVYG
Sbjct: 121 GRQGEKDG--GGGGPGGSG--GGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYG 180

Query: 181 SGGGYHHMGIGGGKEGNSGSG 201
            G G+HHMGIGGGK G+  SG
Sbjct: 181 -GAGFHHMGIGGGKGGSGASG 196

[Close]

BLAST of Cp4.1LG16g03860 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-55
Identity = 123/151 (81.46%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MA+SDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 MGRQGEKDGSGGGGGPSGSGASGGVNSSTGG 151
            GRQG+K+G GGGGG +GSG SGG     GG
Sbjct: 121 AGRQGDKEGGGGGGG-AGSG-SGGAPMYGGG 147

[Close]

BLAST of Cp4.1LG16g03860 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 176.0 bits (445), Expect = 3.0e-44
Identity = 123/202 (60.89%), Postives = 141/202 (69.80%), Query Frame = 0


Query: 1   MAESDNESG----GHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M +SD +SG    G+N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGRQGEKDGSGGGGGPSGSGASGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQG 180
           ++ +GR      +GG  G     A G      GGG  GGGG    G  Y       H Q 
Sbjct: 121 RTGLGR----PQTGGEVGEHQRDAVG-----DGGGFYGGGG----GMQYHQHHQFLHQQN 180

Query: 181 GVYGSGGGYHHMGIGGGKEGNS 199
            +YG+ GG    G GG   G +
Sbjct: 181 HMYGATGGGSDSG-GGAASGRT 188

[Close]

BLAST of Cp4.1LG16g03860 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-42
Identity = 88/126 (69.84%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           +AE++  S    +N N+  + KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVS
Sbjct: 15  VAETNPGSPSSKTNNNNN-NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 74

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTM 120
           EFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK YL KYR+ EGEK   
Sbjct: 75  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNS 134

Query: 121 GRQGEK 127
            +Q ++
Sbjct: 135 PKQQQQ 139

[Close]

BLAST of Cp4.1LG16g03860 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-42
Identity = 88/138 (63.77%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MAESDNESGGHNSNANS------ELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKET 60
           MAES    GG  S+ +        L+ +EQDRFLPIAN+SRIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELE 120
           +QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLK YL +YRE+E
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GEKSTMGRQGEKDGSGGG 133
           G+    G+ GE      G
Sbjct: 121 GDTKGSGKGGESSAKRDG 138

[Close]

BLAST of Cp4.1LG16g03860 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-42
Identity = 89/134 (66.42%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 4   SDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 63
           +D  S        S  S +EQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVSEFI
Sbjct: 2   ADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFI 61

Query: 64  SFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTMGRQ 123
           SFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK YL +YRELEG+    G+ 
Sbjct: 62  SFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKS 121

Query: 124 GEKDGSGGGGGPSG 138
           G+      GGG SG
Sbjct: 122 GDGSNRDAGGGVSG 135

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g03860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23310	2.4e-54	81.46	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	1.5e-45	61.86	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9FGJ3	4.2e-43	60.89	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q75IZ7	5.5e-43	57.47	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q0J7P4	5.9e-37	57.73	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of Cp4.1LG16g03860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513391.1	2.99e-126	100.00	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022943898.1	9.19e-121	98.51	nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6570947...	[more]
XP_022985725.1	1.91e-118	96.55	nuclear transcription factor Y subunit B-3-like [Cucurbita maxima]	[more]
XP_023532503.1	1.75e-108	90.24	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947534.1	9.22e-107	88.46	nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6604918...	[more]

BLAST of Cp4.1LG16g03860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXH2	4.45e-121	98.51	nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JC44	9.23e-119	96.55	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G731	4.46e-107	88.46	nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I2E0	6.34e-107	88.46	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3CMC5	8.63e-105	89.05	nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC1035021...	[more]

BLAST of Cp4.1LG16g03860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14540.1	1.7e-55	81.46	nuclear factor Y, subunit B3	[more]
AT5G47640.1	3.0e-44	60.89	nuclear factor Y, subunit B2	[more]
AT2G13570.1	2.1e-42	69.84	nuclear factor Y, subunit B7	[more]
AT3G53340.1	2.1e-42	63.77	nuclear factor Y, subunit B10	[more]
AT2G38880.2	2.8e-42	66.42	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 55..73 score: 50.24 coord: 93..111 score: 44.86 coord: 74..92 score: 38.52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11064:SF128	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3	coord: 1..180
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 27..91 e-value: 1.9E-27 score: 95.3
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 14..132 e-value: 1.1E-47 score: 163.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..128
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..180
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 58..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g03860.1	Cp4.1LG16g03860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding