Cp4.1LG16g03770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g03770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	F-box protein SNE-like
Location	Cp4.1LG16: 5449004 .. 5449474 (+)
RNA-Seq Expression	Cp4.1LG16g03770
Synteny	Cp4.1LG16g03770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGGCGGAAGTTCTTGATCAACGACAATCTCGACATTCTTATCGAAATCCTCAAGCGGCTGGACGGACCATCGCTCGGCGTCGCGACCTGCGTCTGTCGGCTCTGGTGCACCATCGCTCGAAGTGAATCGGTGTGGGAACAGGTCTGCTTCCGGCACGTAACATCGCCGCTTCCGGCGTCTGTGAAATCGGTGGTGGTCGCCTTGGGAGGGTACAAGCGGCTGTACATGGTGAGCATACGGCCGGTGCTGAGTCGACTCGGCTACTCAGACCTAATGAGGCGAGTTTGGACTCAGAACGAAGTTCAACTTTCACTGTCTCTGTTCTGCGTGGATTACTACGAGCGGCTCACCGGAAATGGAAGACTCGGCGGCGGCGGCGGCGGCGATGCGTCCGCATTGTCACTCATGTTCCTCTGCAACACCGTCAACGTCTGA

mRNA sequence

ATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGGCGGAAGTTCTTGATCAACGACAATCTCGACATTCTTATCGAAATCCTCAAGCGGCTGGACGGACCATCGCTCGGCGTCGCGACCTGCGTCTGTCGGCTCTGGTGCACCATCGCTCGAAGTGAATCGGTGTGGGAACAGGTCTGCTTCCGGCACGTAACATCGCCGCTTCCGGCGTCTGTGAAATCGGTGGTGGTCGCCTTGGGAGGGTACAAGCGGCTGTACATGGTGAGCATACGGCCGGTGCTGAGTCGACTCGGCTACTCAGACCTAATGAGGCGAGTTTGGACTCAGAACGAAGTTCAACTTTCACTGTCTCTGTTCTGCGTGGATTACTACGAGCGGCTCACCGGAAATGGAAGACTCGGCGGCGGCGGCGGCGGCGATGCGTCCGCATTGTCACTCATGTTCCTCTGCAACACCGTCAACGTCTGA

Coding sequence (CDS)

ATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGGCGGAAGTTCTTGATCAACGACAATCTCGACATTCTTATCGAAATCCTCAAGCGGCTGGACGGACCATCGCTCGGCGTCGCGACCTGCGTCTGTCGGCTCTGGTGCACCATCGCTCGAAGTGAATCGGTGTGGGAACAGGTCTGCTTCCGGCACGTAACATCGCCGCTTCCGGCGTCTGTGAAATCGGTGGTGGTCGCCTTGGGAGGGTACAAGCGGCTGTACATGGTGAGCATACGGCCGGTGCTGAGTCGACTCGGCTACTCAGACCTAATGAGGCGAGTTTGGACTCAGAACGAAGTTCAACTTTCACTGTCTCTGTTCTGCGTGGATTACTACGAGCGGCTCACCGGAAATGGAAGACTCGGCGGCGGCGGCGGCGGCGATGCGTCCGCATTGTCACTCATGTTCCTCTGCAACACCGTCAACGTCTGA

Protein sequence

MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV

Homology

[Close]

BLAST of Cp4.1LG16g03770 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-33
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 6   IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQ 65
           + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE+
Sbjct: 10  VEKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEE 69

Query: 66  VCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSL 125
           +CFR V+     S++SVV ALGGY+ LY + IRPVL+R     L + +WT++++QLSLSL
Sbjct: 70  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR-----LPKLLWTRDQLQLSLSL 129

Query: 126 FCVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 157
           +CV YYERL       G   GDA   SL+FL   VNV
Sbjct: 130 YCVHYYERL-----YVGAWLGDAPPSSLIFLRKPVNV 156

[Close]

BLAST of Cp4.1LG16g03770 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 40/113 (35.40%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 21  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPASVKSV 80
           NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+       ++SV
Sbjct: 34  NLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSV 93

Query: 81  VVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLFCVDYYERLT 130
           V+ALGG++RL+ + + P LS+       R  + ++E++L+LSL  + YYE+++
Sbjct: 94  VLALGGFRRLHSLYLWP-LSKPN----PRARFGKDELKLTLSLLSIRYYEKMS 141

[Close]

BLAST of Cp4.1LG16g03770 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-10
Identity = 43/131 (32.82%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 23  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSP--LPASVKSVVVAL 82
           D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       +++VV++L
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSL 138

Query: 83  GGYKRLYMVSIRPVLSR-LGYSDLMRRVWT-----QNEVQLSLSLFCVDYYERL------ 140
           GG++RL+ V IRP+  R  G      R        +++VQLSLSLF + +++ +      
Sbjct: 139 GGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRDQVQLSLSLFSIGFFQNMPCPKKD 198

[Close]

BLAST of Cp4.1LG16g03770 vs. NCBI nr
Match: XP_023512130.1 (F-box protein SNE-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315 bits (808), Expect = 1.61e-108
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120
           CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120

Query: 121 CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 156
           CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 156

[Close]

BLAST of Cp4.1LG16g03770 vs. NCBI nr
Match: KAG6570941.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308 bits (789), Expect = 1.32e-105
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120
           CFRHV SPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF
Sbjct: 61  CFRHVISPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120

Query: 121 CVDYYERLTGNGRLGGGGGG-DASALSLMFLCNTVNV 156
           CVDYYERLTGNGRLGGGGGG DASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGNGRLGGGGGGGDASALSLMFLCNTVNV 157

[Close]

BLAST of Cp4.1LG16g03770 vs. NCBI nr
Match: XP_022943904.1 (F-box protein SNE-like [Cucurbita moschata] >KAG7010780.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306 bits (784), Expect = 6.87e-105
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120
           CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120

Query: 121 CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 156
           CVDYYERLTGNGRLGGGG  DASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGNGRLGGGG--DASALSLMFLCNTVNV 154

[Close]

BLAST of Cp4.1LG16g03770 vs. NCBI nr
Match: XP_022985800.1 (F-box protein SNE-like [Cucurbita maxima])

HSP 1 Score: 304 bits (779), Expect = 3.84e-104
Identity = 153/156 (98.08%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120
           CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120

Query: 121 CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 156
           CVDYYERLTGNGRLGGG   DASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGNGRLGGG---DASALSLMFLCNTVNV 153

[Close]

BLAST of Cp4.1LG16g03770 vs. NCBI nr
Match: XP_038902594.1 (F-box protein SNE [Benincasa hispida])

HSP 1 Score: 293 bits (750), Expect = 9.83e-100
Identity = 146/156 (93.59%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120
           CFRHVTSPLP+SVKSVV ALGGYKRLYMVSIRPVLSRLGYSDL+RRVWTQ+EVQLSLSLF
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 156
           CVDYYERLTG+GR+GG    DASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGG----DASALSLMFLCNTVNV 152

[Close]

BLAST of Cp4.1LG16g03770 vs. ExPASy TrEMBL
Match: A0A6J1FVJ9 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111448489 PE=4 SV=1)

HSP 1 Score: 306 bits (784), Expect = 3.33e-105
Identity = 153/156 (98.08%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120
           CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120

Query: 121 CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 156
           CVDYYERLTGNGRLGGGG  DASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGNGRLGGGG--DASALSLMFLCNTVNV 154

[Close]

BLAST of Cp4.1LG16g03770 vs. ExPASy TrEMBL
Match: A0A6J1JCA9 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111483741 PE=4 SV=1)

HSP 1 Score: 304 bits (779), Expect = 1.86e-104
Identity = 153/156 (98.08%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120
           CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120

Query: 121 CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 156
           CVDYYERLTGNGRLGGG   DASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGNGRLGGG---DASALSLMFLCNTVNV 153

[Close]

BLAST of Cp4.1LG16g03770 vs. ExPASy TrEMBL
Match: A0A0A0KAT5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G111930 PE=4 SV=1)

HSP 1 Score: 288 bits (737), Expect = 4.57e-98
Identity = 143/156 (91.67%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120
           CFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGYSDL+RRVWTQ+EVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 156
           CVDYYERLTG+GR+GG    +ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGG----EASALSLMFLCNTVNV 152

[Close]

BLAST of Cp4.1LG16g03770 vs. ExPASy TrEMBL
Match: A0A5A7V4V6 (F-box protein SNE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001340 PE=4 SV=1)

HSP 1 Score: 285 bits (730), Expect = 5.34e-97
Identity = 142/156 (91.03%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120
           CFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGYSDL+RRVWTQ+EVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 156
           CVDYYERLTG+GR+GG    DASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGG----DASALSLMFLCNTVNV 152

[Close]

BLAST of Cp4.1LG16g03770 vs. ExPASy TrEMBL
Match: A0A1S4E4K7 (F-box protein SNE OS=Cucumis melo OX=3656 GN=LOC103502114 PE=4 SV=1)

HSP 1 Score: 283 bits (725), Expect = 3.09e-96
Identity = 141/156 (90.38%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120
           CFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGYSDL+RRVWTQ+EVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 156
           CVDYYERLTG+GR+GG    DASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGG----DASALSLMFLCNTVNV 152

[Close]

BLAST of Cp4.1LG16g03770 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-34
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 6   IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQ 65
           + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE+
Sbjct: 10  VEKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEE 69

Query: 66  VCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSL 125
           +CFR V+     S++SVV ALGGY+ LY + IRPVL+R     L + +WT++++QLSLSL
Sbjct: 70  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR-----LPKLLWTRDQLQLSLSL 129

Query: 126 FCVDYYERLTGNGRLGGGGGGDASALSLMFLCNTVNV 157
           +CV YYERL       G   GDA   SL+FL   VNV
Sbjct: 130 YCVHYYERL-----YVGAWLGDAPPSSLIFLRKPVNV 156

[Close]

BLAST of Cp4.1LG16g03770 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-13
Identity = 40/113 (35.40%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 21  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPASVKSV 80
           NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+       ++SV
Sbjct: 34  NLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSV 93

Query: 81  VVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLFCVDYYERLT 130
           V+ALGG++RL+ + + P LS+       R  + ++E++L+LSL  + YYE+++
Sbjct: 94  VLALGGFRRLHSLYLWP-LSKPN----PRARFGKDELKLTLSLLSIRYYEKMS 141

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g03770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUB6	2.3e-33	49.68	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]
Q9STX3	1.1e-11	35.40	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	4.8e-10	32.82	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]

BLAST of Cp4.1LG16g03770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512130.1	1.61e-108	100.00	F-box protein SNE-like [Cucurbita pepo subsp. pepo]	[more]
KAG6570941.1	1.32e-105	98.09	F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022943904.1	6.87e-105	98.08	F-box protein SNE-like [Cucurbita moschata] >KAG7010780.1 F-box protein SNE, par...	[more]
XP_022985800.1	3.84e-104	98.08	F-box protein SNE-like [Cucurbita maxima]	[more]
XP_038902594.1	9.83e-100	93.59	F-box protein SNE [Benincasa hispida]	[more]

BLAST of Cp4.1LG16g03770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVJ9	3.33e-105	98.08	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111448489 PE=4 SV=1	[more]
A0A6J1JCA9	1.86e-104	98.08	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111483741 PE=4 SV=1	[more]
A0A0A0KAT5	4.57e-98	91.67	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G111930 PE=4 ...	[more]
A0A5A7V4V6	5.34e-97	91.03	F-box protein SNE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00...	[more]
A0A1S4E4K7	3.09e-96	90.38	F-box protein SNE OS=Cucumis melo OX=3656 GN=LOC103502114 PE=4 SV=1	[more]

BLAST of Cp4.1LG16g03770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48170.1	1.7e-34	49.68	F-box family protein	[more]
AT4G24210.1	8.1e-13	35.40	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 22..60 e-value: 0.0073 score: 25.5
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 23..63 e-value: 1.2E-8 score: 34.7
None	No IPR available	GENE3D	1.20.1280.50		coord: 8..111 e-value: 1.8E-9 score: 39.4
IPR044184	F-box protein SNE	PANTHER	PTHR47750	F-BOX PROTEIN SNE	coord: 3..156
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 23..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g03770.1	Cp4.1LG16g03770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding