Cp4.1LG16g03150 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g03150
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DUF1279 domain-containing protein
Location	Cp4.1LG16: 5072915 .. 5073352 (+)
RNA-Seq Expression	Cp4.1LG16g03150
Synteny	Cp4.1LG16g03150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCAGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

mRNA sequence

ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCAGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

Coding sequence (CDS)

ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTGTCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCAGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

Protein sequence

MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLCNKALLPIRIPITIGLTPPIARMLARRGIMRSG

Homology

[Close]

BLAST of Cp4.1LG16g03150 vs. NCBI nr
Match: XP_023513086.1 (uncharacterized protein LOC111777632 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271 bits (692), Expect = 3.46e-91
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLCNKALLPI 120
           KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLCNKALLPI
Sbjct: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLCNKALLPI 120

Query: 121 RIPITIGLTPPIARMLARRGIMRSG 145
           RIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 RIPITIGLTPPIARMLARRGIMRSG 145

[Close]

BLAST of Cp4.1LG16g03150 vs. NCBI nr
Match: XP_022943842.1 (uncharacterized protein LOC111448454 [Cucurbita moschata] >KAG6571014.1 hypothetical protein SDJN03_29929, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010845.1 hypothetical protein SDJN02_27641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269 bits (688), Expect = 1.41e-90
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLCNKALLPI 120
           KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTG ALALAVLCNKALLPI
Sbjct: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIGLTPPIARMLARRGIMRSG 145
           RIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 RIPITIGLTPPIARMLARRGIMRSG 145

[Close]

BLAST of Cp4.1LG16g03150 vs. NCBI nr
Match: XP_022986110.1 (uncharacterized protein LOC111483951 [Cucurbita maxima])

HSP 1 Score: 259 bits (661), Expect = 2.34e-86
Identity = 142/152 (93.42%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLC 120
           KDQSQTSP       DDGLVIEESPAS+ QSTVAQEPRTRNRTAELAASTG ALALAVLC
Sbjct: 61  KDQSQTSPGETASSVDDGLVIEESPASETQSTVAQEPRTRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIRIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG16g03150 vs. NCBI nr
Match: XP_022971121.1 (uncharacterized protein LOC111469888 [Cucurbita maxima])

HSP 1 Score: 241 bits (614), Expect = 3.41e-79
Identity = 132/152 (86.84%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTG ALALAVLC
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIRIPITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG16g03150 vs. NCBI nr
Match: XP_022947464.1 (uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothetical protein SDJN02_11032, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240 bits (612), Expect = 6.88e-79
Identity = 131/152 (86.18%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTG ALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIR+PITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG16g03150 vs. ExPASy TrEMBL
Match: A0A6J1FU56 (uncharacterized protein LOC111448454 OS=Cucurbita moschata OX=3662 GN=LOC111448454 PE=4 SV=1)

HSP 1 Score: 269 bits (688), Expect = 6.82e-91
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLCNKALLPI 120
           KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTG ALALAVLCNKALLPI
Sbjct: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIGLTPPIARMLARRGIMRSG 145
           RIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 RIPITIGLTPPIARMLARRGIMRSG 145

[Close]

BLAST of Cp4.1LG16g03150 vs. ExPASy TrEMBL
Match: A0A6J1JD52 (uncharacterized protein LOC111483951 OS=Cucurbita maxima OX=3661 GN=LOC111483951 PE=4 SV=1)

HSP 1 Score: 259 bits (661), Expect = 1.13e-86
Identity = 142/152 (93.42%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLC 120
           KDQSQTSP       DDGLVIEESPAS+ QSTVAQEPRTRNRTAELAASTG ALALAVLC
Sbjct: 61  KDQSQTSPGETASSVDDGLVIEESPASETQSTVAQEPRTRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIRIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG16g03150 vs. ExPASy TrEMBL
Match: A0A6J1I2F7 (uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888 PE=4 SV=1)

HSP 1 Score: 241 bits (614), Expect = 1.65e-79
Identity = 132/152 (86.84%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTG ALALAVLC
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIRIPITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG16g03150 vs. ExPASy TrEMBL
Match: A0A6J1G6W3 (uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC111451320 PE=4 SV=1)

HSP 1 Score: 240 bits (612), Expect = 3.33e-79
Identity = 131/152 (86.18%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTG ALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIR+PITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG16g03150 vs. ExPASy TrEMBL
Match: A0A6J1CXM4 (uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015379 PE=4 SV=1)

HSP 1 Score: 238 bits (606), Expect = 2.73e-78
Identity = 130/152 (85.53%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLC 120
           KDQ QT P       DDG VIEE P S+ QST  QEPR RNRTAELAASTG ALALAVLC
Sbjct: 61  KDQPQTIPSESTSSADDGFVIEERPVSENQSTAVQEPRRRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIRIPITI LTPPI+R+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPISRLLARRGIMRSG 152

[Close]

BLAST of Cp4.1LG16g03150 vs. TAIR 10
Match: AT2G20940.1 (Protein of unknown function (DUF1279) )

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-32
Identity = 78/137 (56.93%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 9   RFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDQSQTSP 68
           R +E++KKYGKVA+GVHFSVS  SI+G Y+AIKNNVDVESLL+K  +  FSSK+    S 
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQIPWFSSKENPNPSL 63

Query: 69  DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLCNKALLPIRIPITIGL 128
           D  L  + S  SD            N+T +LA S G ALALAVLCNKAL PIR+PIT+ L
Sbjct: 64  DLKLEEQGSVTSD------------NKTKQLAKSAGGALALAVLCNKALFPIRVPITMAL 123

Query: 129 TPPIARMLARRGIMRSG 146
           TPPIAR L +R I+++G
Sbjct: 124 TPPIARFLRQRKILKTG 128

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g03150 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g03150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513086.1	3.46e-91	100.00	uncharacterized protein LOC111777632 [Cucurbita pepo subsp. pepo]	[more]
XP_022943842.1	1.41e-90	99.31	uncharacterized protein LOC111448454 [Cucurbita moschata] >KAG6571014.1 hypothet...	[more]
XP_022986110.1	2.34e-86	93.42	uncharacterized protein LOC111483951 [Cucurbita maxima]	[more]
XP_022971121.1	3.41e-79	86.84	uncharacterized protein LOC111469888 [Cucurbita maxima]	[more]
XP_022947464.1	6.88e-79	86.18	uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothet...	[more]

BLAST of Cp4.1LG16g03150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FU56	6.82e-91	99.31	uncharacterized protein LOC111448454 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1JD52	1.13e-86	93.42	uncharacterized protein LOC111483951 OS=Cucurbita maxima OX=3661 GN=LOC111483951...	[more]
A0A6J1I2F7	1.65e-79	86.84	uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888...	[more]
A0A6J1G6W3	3.33e-79	86.18	uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A6J1CXM4	2.73e-78	85.53	uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Cp4.1LG16g03150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20940.1	1.1e-32	56.93	Protein of unknown function (DUF1279)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009688	Protein FAM210A/B-like domain	PFAM	PF06916	DUF1279	coord: 9..130 e-value: 1.4E-25 score: 89.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..93
None	No IPR available	PANTHER	PTHR21377:SF0	PROTEIN FAM210B, MITOCHONDRIAL	coord: 8..143
None	No IPR available	PANTHER	PTHR21377	UNCHARACTERIZED	coord: 8..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g03150.1	Cp4.1LG16g03150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion