Cp4.1LG16g02840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g02840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG16: 4917020 .. 4917307 (+)
RNA-Seq ExpressionCp4.1LG16g02840
SyntenyCp4.1LG16g02840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTATTGCTATGGCTGTAAACCTCGCCCTTCCGGTCCACTCCCCGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCAGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTTGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGTCCGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCATGGCGCATGGTAA

mRNA sequence

ATGACTTATTGCTATGGCTGTAAACCTCGCCCTTCCGGTCCACTCCCCGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCAGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTTGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGTCCGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCATGGCGCATGGTAA

Coding sequence (CDS)

ATGACTTATTGCTATGGCTGTAAACCTCGCCCTTCCGGTCCACTCCCCGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCAGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTTGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGTCCGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCATGGCGCATGGTAA

Protein sequence

MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILLVLVRCLSSVDSSSRYYACPCNRGWKMQCRCGHGAW
Homology
BLAST of Cp4.1LG16g02840 vs. NCBI nr
Match: KAG6571042.1 (hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (507), Expect = 1.42e-64
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL
Sbjct: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGHGAW 95
          VLVRCLS+VDSSSRYYACPCNRGWKMQCRCG GAW
Sbjct: 61 VLVRCLSTVDSSSRYYACPCNRGWKMQCRCGRGAW 95

BLAST of Cp4.1LG16g02840 vs. NCBI nr
Match: KAA0045689.1 (hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ99593.1 hypothetical protein E5676_scaffold123G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (484), Expect = 4.73e-61
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPRPSGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGHG-AW 95
          VLVRCLSS+DSS RYYACPCNRGWKM CRCGHG AW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

BLAST of Cp4.1LG16g02840 vs. NCBI nr
Match: KGN61893.1 (hypothetical protein Csa_006600 [Cucumis sativus])

HSP 1 Score: 184 bits (468), Expect = 1.31e-58
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPRPSGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGHG-AW 95
          VLVRCL+S+DSS RYYACPC+RGWKM CRCG G AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

BLAST of Cp4.1LG16g02840 vs. NCBI nr
Match: KAG6605007.1 (hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165 bits (418), Expect = 7.57e-51
Identity = 80/95 (84.21%), Postives = 85/95 (89.47%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYG KP PSGPLPGP+L+LL VVFILIGLSSLF SEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGYKPHPSGPLPGPILVLLTVVFILIGLSSLFSSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGHGAW 95
          VLVR LSSVDSSSR+  C C+RGWKM CRC HGAW
Sbjct: 61 VLVRFLSSVDSSSRH--CACDRGWKMHCRCRHGAW 93

BLAST of Cp4.1LG16g02840 vs. NCBI nr
Match: PKI78722.1 (hypothetical protein CRG98_000947 [Punica granatum])

HSP 1 Score: 76.3 bits (186), Expect = 1.20e-15
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 0

Query: 3  YCYGCK-PRPS-GPLPGPVLLLLAVVFILIGLSSLFPSEPI-DFSEFQINWPLLAVPIIL 62
          YCY CK P PS GP+P  VLL L +  I I LS L   + + +  E  INW LLAVPI++
Sbjct: 5  YCYKCKHPPPSPGPMPHTVLLFLLITAIFIALSKLLAFDSLFEAPEININWGLLAVPIVI 64

Query: 63 LVLVRCLSSVDSSSRYYA-CPCNRGWKMQCRC 90
          L +V  LSS+D   ++Y   PC R WK  C C
Sbjct: 65 LAIVHYLSSLDKPRKFYGPVPCGRCWKPFCYC 96

BLAST of Cp4.1LG16g02840 vs. ExPASy TrEMBL
Match: A0A5D3BJW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001670 PE=4 SV=1)

HSP 1 Score: 191 bits (484), Expect = 2.29e-61
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPRPSGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGHG-AW 95
          VLVRCLSS+DSS RYYACPCNRGWKM CRCGHG AW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

BLAST of Cp4.1LG16g02840 vs. ExPASy TrEMBL
Match: A0A0A0LJB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 184 bits (468), Expect = 6.33e-59
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPRPSGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGHG-AW 95
          VLVRCL+S+DSS RYYACPC+RGWKM CRCG G AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

BLAST of Cp4.1LG16g02840 vs. ExPASy TrEMBL
Match: A0A2I0LDH6 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000947 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.82e-16
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 0

Query: 3  YCYGCK-PRPS-GPLPGPVLLLLAVVFILIGLSSLFPSEPI-DFSEFQINWPLLAVPIIL 62
          YCY CK P PS GP+P  VLL L +  I I LS L   + + +  E  INW LLAVPI++
Sbjct: 5  YCYKCKHPPPSPGPMPHTVLLFLLITAIFIALSKLLAFDSLFEAPEININWGLLAVPIVI 64

Query: 63 LVLVRCLSSVDSSSRYYA-CPCNRGWKMQCRC 90
          L +V  LSS+D   ++Y   PC R WK  C C
Sbjct: 65 LAIVHYLSSLDKPRKFYGPVPCGRCWKPFCYC 96

BLAST of Cp4.1LG16g02840 vs. ExPASy TrEMBL
Match: A0A1R3JDI7 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.29e-12
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 0

Query: 3  YCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPI-DFSEFQINWPLLAVPIILLV 62
          YC  C  RPS P+P  VLL LA+  +L+ LSSL   E + + +E  + W +L   + LLV
Sbjct: 10 YCGRCHRRPSSPMPYSVLLFLALALMLLALSSLIKFEIVLESAEDSMTWLVLLAVLALLV 69

Query: 63 LVRCLSSVDSSSRYYACPCNR--GWK 85
          +VRCLSS DS  + + C C R   WK
Sbjct: 70 VVRCLSSTDSCRQPHYCGCGRCIKWK 95

BLAST of Cp4.1LG16g02840 vs. ExPASy TrEMBL
Match: A0A6J1C2N0 (uncharacterized protein LOC111007895 OS=Momordica charantia OX=3673 GN=LOC111007895 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.11e-11
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 14 PLPGPVLLLLAVVFILIGLSSLFPSEP-IDFSEFQINWPLLAVPIILLVLVRCLSSVDSS 72
          PLP PVLLLL VVF+ +G S  F  E  ++ +E QINW L A P++L+VLVRCLSSVD S
Sbjct: 20 PLPYPVLLLLGVVFVFLGASWWFSYESAVEAAEEQINWLLFATPVLLIVLVRCLSSVDPS 79

BLAST of Cp4.1LG16g02840 vs. TAIR 10
Match: AT2G21185.1 (unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-08
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 0

Query: 4  CYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSE-PIDFSEFQINWPLL-AVPIILLV 63
          C  C+   S   P PV++++ V  +L+ LSS+   E  +   E  ++W LL AVP+ LL 
Sbjct: 8  CGRCRVSTS---PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLF 67

Query: 64 LVRCLSSVDSSSR-YYACPCNRGWKMQC 89
           VRCLS +++S R  Y CPC R W+  C
Sbjct: 68 AVRCLSCLETSKRSTYYCPCGR-WRCVC 91

BLAST of Cp4.1LG16g02840 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 9.9e-06
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 14 PLPGPVLLLLAVVFILIGLSSLFPS--EPIDFSEFQINWPLLAVPIILLVLVRCLSSVDS 72
          PLP PVLL+LAV  + + LSS + S  E  + +E QIN+ LL +P+ L+VLVR LSS+++
Sbjct: 18 PLPYPVLLILAVASVFL-LSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSMEN 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571042.11.42e-6497.89hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0045689.14.73e-6192.71hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ995... [more]
KGN61893.11.31e-5889.58hypothetical protein Csa_006600 [Cucumis sativus][more]
KAG6605007.17.57e-5184.21hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sorori... [more]
PKI78722.11.20e-1547.83hypothetical protein CRG98_000947 [Punica granatum][more]
Match NameE-valueIdentityDescription
A0A5D3BJW12.29e-6192.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LJB66.33e-5989.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1[more]
A0A2I0LDH65.82e-1647.83Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000947 PE=4 SV=1[more]
A0A1R3JDI77.29e-1244.19Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1[more]
A0A6J1C2N02.11e-1160.00uncharacterized protein LOC111007895 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
Match NameE-valueIdentityDescription
AT2G21185.14.8e-0839.77unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacter... [more]
AT2G21180.19.9e-0650.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306:SF32SUBFAMILY NOT NAMEDcoord: 1..93
NoneNo IPR availablePANTHERPTHR33306EXPRESSED PROTEIN-RELATED-RELATEDcoord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g02840.1Cp4.1LG16g02840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane