Cp4.1LG16g01840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g01840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific)
Location	Cp4.1LG16: 4016822 .. 4019953 (+)
RNA-Seq Expression	Cp4.1LG16g01840
Synteny	Cp4.1LG16g01840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGTCAAGGTTGAACTCCAGAAGGTGTAGTCTTGGACTGCTCTAGGAATTGCTTGATTTATTTTCATTATCTTCAACTATGTTTATAATTTTGGTTTAGCGTTCTGTCAGGGTATAAGCAGAATATTTATTAGGACCGTAGACGAATTTTGGGTCTTAAAACAATATCGCTAAGATAGTATTGACGACCTTATTTGAAGTTCTGTGGATTTCAACTTTACTTTATTTTTCATTTTGTGTTACGTGAATCAGACGCTTATGTATTTTTGTACAGATTGGAATTCTTGGGCTTCAGCTAATATGGCATTTCCTGCATTTGATTCTTAGCTCATTTTACTTTGTGGTTGGTATTGCCACAACACTTGAAAGTTATTTGATATCATGTGGACTCCTACGCAAGTACAATCATCTTAGTATAGAGATGGTTAAATATCTTGCCATTGTGGTGGATAGTGATGAAGCTTATAATACTTTAAAAATTATTGAACTTCTGCAATGGTTAGCATCGTTGGGCATTAGAAGCATTTGCTTGTATGATGTTGAAGGTAATGATTTTGGGTCCACCCAAGAATTCTGAGCCCTCATTTGAATGTCTTTCCAAATTTGTTGAATTTTATGCTTACTTGACTGTATTTTATGCTCAAGGGGTGCTTAAGCAATCCAAGGAAATCATTTTGAAGAAAGTAAACAATGCGACGGTGTTCCAGGTACGTGCAAATGTAACGAAGATAGAATTAAACCTAATGGTTCAGTAAGTGATGAAGTCTTTTGCATTCAACCAAGTGTTCATGGCGTCCAAATACTTCGAGGCCTTCTCTGGAATATTAATAATCTAGGGAGTTTCCTAGTCTTGATTGTTGCATGGCTAACGATACTTCGAGGCTTTCTAGGGTCCTTTGTGGAATAGCATACTTTTGATTCCATGTGTACTTCTCTTTGATGATACTAAAGATCGCATGTTGGGCGTTTTTTTTTTCATTGGAGTTGCATATTGGTCTTTGCATGAGGTGGTTATTTCTTCAATAGTACGACGCATAACTGCTACTTTTTGTTTTCTATTACACGTTTGACCAAGGAAAATCATAGTAGTCTGCAATTTGAATTTAGGAGGTGAATGCTAATAATAAGATGTGCATTGTTCATCTAACTTGGTCATTGCATTCAGTAAACTGATGTACCTCTCCAATTAAACTGTAGGACATTACTCTGGAGTTCATATCAATCTCTGATGGAAAGGAAGCCGTTGCCAAAGCAGCTAATTTTCTTCTTGAAAATAAGTTGAGAAAAATGAACATGAGCGAAGATCACAGGCGGCGCTTTTCTGAATCTCAGATGACTGAGGCTTTAAAAGCAGTTGGTTTGTATTCTTGGTTATGCTTGATAAGGTTCAGAGTACTACTTTACTCGAATGTTAATTAATCTTACGGGTACTCGTGAATCTGTTATTAGGTTGTGGAGGACCTGATCCCGACCTTATGTTAGTATATGGACCTATACGATGTCACTTAGGGTTTCCTGCATGGAGAATTCCCTACACAGAGATTCTGTGAGTCTTTTTGTTCTTTTTTTTTTATAAGCAATGGCGCTTTTCACTGAAACGATGGAAGTAGCTAAAAAATTACTACCGAGAAGGTGAAGGACACATGGTGGATAATTACACAGGTTCTATTAAAGAACAGCAACTCGATCATCTAAACTTATGAACACCCAAGCATCCTCCATATCCTTGCCTTAAGAGATCAAAATCTCTTCTTTCTCTCTATCAACAGCTTCTAGAGGAGCAGGGACTGATGCACCCACAACCTCCTTGTGCTGTTCTTTAGGGAATGTCCACAAAGGAGTTTATTACAATAGCCATCATGCTTCCTAAGACTTCAATAAAGACTAACCATGTATGTGCTTCAAAGCCATGTGGATTTAGTAAAAGCTTTTCAATATTCTCAGCTTTGAACTCCTTTTGCAACAGAATATCAGGTTGCAAGTCCCTCAGACAACTCTTAATTCCACCTATTTTCCTTGTCGTCCTTAGCTTGCATGTCGACATCCATATGTATGGGAATTTGTTGTAGTTCCTCTATAACATAATTTTTCAGTTCCCTCTGACTTCTTAAGCTCAATCTGTTTATCTTCGCCTCCTTTTTTTTCCTTTTCGTTTTCTTTTTTTCCCCCTCGTGTGTGTGTTTGGCCTTTTTCTGTCTAAAAACCATGATATCAAGCACCACACAAAAGTACCAGTTGGTTTGAAGTGTCTGAAACTCTTTCCCATTCTATTCCATTGTTAGCATCCACACCTTGTTTTGTTTGTTCATTGCTACTGTGAGATCCCACGTCGGTTGGGGAGGAGAACAAAACATTTTTTATAAGGGTGTTGAAACCTCTCCTAGACGCGTTTTAAAAACCTTGAGGGGATGCCCAAAAGGGAAAGCCCAAAAAAGATAATATCTGCCAGCGATGGGCTTGGGCCGTTACTGATACCATATGTTTATGTTTTTTTTTTTTTTTTATGAGAATTCACATTTGTTTTCCTCCCTAGTTGCTTGACACTTCACTAGGGAAACATCATCTTAAGGCTATTATATAATTGTTCTGCTTAAGATCCATATATATTGGAAATGATTCCTCCACAATTGGACCTCTTTCTTTGTTACCCCATTACATGCTAGTTCCCTATACCACCCTGGGCTGCAAGAAGTAGAATATGACCCATCCGTTGTATGCTCATTCAGTGCTTCAGACTCTTTCATTCCCCCAGTAACAGAATAAATGTCCTTAAGTCATGGTGTTTATTATATCGAACATTTTTACGGTTGTATGCATGATAACGTATTAAAGACAAACATTGGTTTTTTTTTTTTTTGGTGATCTAAGAAAGCTTATTTGATGATGTGTGACTGTAGAATCTTTACTTATGGAATAAATCAATTTATGCATCTTAACCAACGCAAATTTTATGTATGTAATAAGTTTTCCCTCTGCTTATTCCATTCATTTTTGCAACGAAGAGAACTGTATGATCTTTGATTTATGTTGTAATGCAGACACATGGGACCATTGAAATCCATGAAGTATGGTTCCCTGGTGAAAGCCATTTACAAATTTACCATGGTGCGGCAAAACTATGGTGAGTGA

mRNA sequence

ATGACCGTCAAGGTTGAACTCCAGAAGATTGGAATTCTTGGGCTTCAGCTAATATGGCATTTCCTGCATTTGATTCTTAGCTCATTTTACTTTGTGGTTGGTATTGCCACAACACTTGAAAGTTATTTGATATCATGTGGACTCCTACGCAAGTACAATCATCTTAGTATAGAGATGGTTAAATATCTTGCCATTGTGGTGGATAGTGATGAAGCTTATAATACTTTAAAAATTATTGAACTTCTGCAATGGTTAGCATCGTTGGGCATTAGAAGCATTTGCTTGTATGATGTTGAAGGGGTGCTTAAGCAATCCAAGGAAATCATTTTGAAGAAAGTAAACAATGCGACGGTGTTCCAGGACATTACTCTGGAGTTCATATCAATCTCTGATGGAAAGGAAGCCGTTGCCAAAGCAGCTAATTTTCTTCTTGAAAATAAGTTGAGAAAAATGAACATGAGCGAAGATCACAGGCGGCGCTTTTCTGAATCTCAGATGACTGAGGCTTTAAAAGCAGTTGGTTGTGGAGGACCTGATCCCGACCTTATGTTAGTATATGGACCTATACGATGTCACTTAGGGTTTCCTGCATGGAGAATTCCCTACACAGAGATTCTACACATGGGACCATTGAAATCCATGAAGTATGGTTCCCTGGTGAAAGCCATTTACAAATTTACCATGGTGCGGCAAAACTATGGTGAGTGA

Coding sequence (CDS)

ATGACCGTCAAGGTTGAACTCCAGAAGATTGGAATTCTTGGGCTTCAGCTAATATGGCATTTCCTGCATTTGATTCTTAGCTCATTTTACTTTGTGGTTGGTATTGCCACAACACTTGAAAGTTATTTGATATCATGTGGACTCCTACGCAAGTACAATCATCTTAGTATAGAGATGGTTAAATATCTTGCCATTGTGGTGGATAGTGATGAAGCTTATAATACTTTAAAAATTATTGAACTTCTGCAATGGTTAGCATCGTTGGGCATTAGAAGCATTTGCTTGTATGATGTTGAAGGGGTGCTTAAGCAATCCAAGGAAATCATTTTGAAGAAAGTAAACAATGCGACGGTGTTCCAGGACATTACTCTGGAGTTCATATCAATCTCTGATGGAAAGGAAGCCGTTGCCAAAGCAGCTAATTTTCTTCTTGAAAATAAGTTGAGAAAAATGAACATGAGCGAAGATCACAGGCGGCGCTTTTCTGAATCTCAGATGACTGAGGCTTTAAAAGCAGTTGGTTGTGGAGGACCTGATCCCGACCTTATGTTAGTATATGGACCTATACGATGTCACTTAGGGTTTCCTGCATGGAGAATTCCCTACACAGAGATTCTACACATGGGACCATTGAAATCCATGAAGTATGGTTCCCTGGTGAAAGCCATTTACAAATTTACCATGGTGCGGCAAAACTATGGTGAGTGA

Protein sequence

MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMVKYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQDITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDPDLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGE

Homology

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BLAST of Cp4.1LG16g01840 vs. ExPASy Swiss-Prot
Match: Q96E22 (Dehydrodolichyl diphosphate synthase complex subunit NUS1 OS=Homo sapiens OX=9606 GN=NUS1 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-08
Identity = 41/196 (20.92%), Postives = 83/196 (42.35%), Query Frame = 0


Query: 65  IVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKV----------- 124
           ++ + ++  +   I  L+ W  ++GI  I +YD +G+ K++   ++ ++           
Sbjct: 104 VITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQQQELLGLD 163

Query: 125 --------------NNATVFQDITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRR 184
                         ++  +   + ++ +S  DGK  + +AA    +   +K     D   
Sbjct: 164 CSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIVRAAQDFCQLVAQKQKRPTD--- 223

Query: 185 RFSESQMTEALKAVGCGGPDPDLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSL 236
                 +   L + GC  PDPDL+L +GP+   LGF  W I  TEI+ +    ++ Y   
Sbjct: 224 -LDVDTLASLLSSNGC--PDPDLVLKFGPVDSTLGFLPWHIRLTEIVSLPSHLNISYEDF 283

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BLAST of Cp4.1LG16g01840 vs. ExPASy Swiss-Prot
Match: Q9Y7K8 (Dehydrodolichyl diphosphate synthase complex subunit nus1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nus1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.7e-08
Identity = 44/203 (21.67%), Postives = 85/203 (41.87%), Query Frame = 0


Query: 61  KYLAIVVDSDEAYNTLKII----ELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNA 120
           K++A++++  E      +I    EL  W     IR + +Y+ +G LKQS E + K + + 
Sbjct: 61  KHIAVIIECVEDGGIEGLIHDACELSAWCVCSNIRELTIYERKGFLKQSPEAVEKAIYSH 120

Query: 121 TVFQ-------------------------DITLEFISISDGKEAVAKAANFLLENKLRKM 180
             F                          D+ +  I+  DG++A+      L +   +K+
Sbjct: 121 LPFYLGGDKCTVHVTNPCSPDEKNQNDCVDLKVHLIAKEDGRDAIIDLTRGLADLCTKKV 180

Query: 181 NMSEDHRRRFSESQMTEALKAVGCGGPDPDLMLVYGPIRCHLGFPAWRIPYTEILHMGPL 235
             S        + ++ E++       P+PDL++++ P+    GFP W++   EI H   L
Sbjct: 181 ISSTQVTLELIDKELKESVI------PEPDLLIIFAPLLKLQGFPPWQLRLCEIFHDPIL 240

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BLAST of Cp4.1LG16g01840 vs. ExPASy Swiss-Prot
Match: Q99LJ8 (Dehydrodolichyl diphosphate synthase complex subunit Nus1 OS=Mus musculus OX=10090 GN=Nus1 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 42/183 (22.95%), Postives = 78/183 (42.62%), Query Frame = 0


Query: 78  IIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKV---------------------NNA 137
           I  L+ W  ++GI  I +YD +G+ K++   ++ ++                     +N 
Sbjct: 121 IASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQQQELLGQDCSKYSAEFANSND 180

Query: 138 TVFQDI----TLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKA 197
              QD+     ++ +S  DGK  + +AA    +   ++     D       S ++     
Sbjct: 181 KDDQDLNCPSAVKVLSPEDGKADIVRAAQDFCQLVAQQQRKPTDLDVDLLGSLLSSH--- 240

Query: 198 VGCGGPDPDLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQN 236
              G PDPDL+L +GP+   LGF  W+I  TEI+ +    ++ Y     A+ ++    Q 
Sbjct: 241 ---GFPDPDLVLKFGPVDSTLGFLPWQIRLTEIVSLPSHLNISYEDFFSALRQYAACEQR 297

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BLAST of Cp4.1LG16g01840 vs. NCBI nr
Match: XP_023513355.1 (dehydrodolichyl diphosphate synthase complex subunit nus1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 460 bits (1184), Expect = 3.11e-163
Identity = 234/235 (99.57%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60
           MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV
Sbjct: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60

Query: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120
           KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ
Sbjct: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120

Query: 121 DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP 180
           DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP
Sbjct: 121 DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP 180

Query: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGE 235
           DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYG+
Sbjct: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGK 235

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BLAST of Cp4.1LG16g01840 vs. NCBI nr
Match: XP_022943677.1 (dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 455 bits (1170), Expect = 4.24e-161
Identity = 231/235 (98.30%), Postives = 233/235 (99.15%), Query Frame = 0


Query: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60
           MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV
Sbjct: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60

Query: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120
           KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNA+VFQ
Sbjct: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNASVFQ 120

Query: 121 DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP 180
           DITLEFISISDGKEAVAKAANFLLENK RK NMSEDHRRRFSESQMTEALKAVGCGGPDP
Sbjct: 121 DITLEFISISDGKEAVAKAANFLLENKFRKTNMSEDHRRRFSESQMTEALKAVGCGGPDP 180

Query: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGE 235
           DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYG+
Sbjct: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGK 235

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BLAST of Cp4.1LG16g01840 vs. NCBI nr
Match: KAG6571185.1 (Anaphase-promoting complex subunit 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 454 bits (1167), Expect = 4.15e-159
Identity = 230/235 (97.87%), Postives = 233/235 (99.15%), Query Frame = 0


Query: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60
           MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV
Sbjct: 99  MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 158

Query: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120
           KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNA+VFQ
Sbjct: 159 KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNASVFQ 218

Query: 121 DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP 180
           DITLEFISISDGKEAVA+AANFLLENK RK NMSEDHRRRFSESQMTEALKAVGCGGPDP
Sbjct: 219 DITLEFISISDGKEAVARAANFLLENKFRKTNMSEDHRRRFSESQMTEALKAVGCGGPDP 278

Query: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGE 235
           DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYG+
Sbjct: 279 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGK 333

[Close]

BLAST of Cp4.1LG16g01840 vs. NCBI nr
Match: XP_022986600.1 (dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 449 bits (1155), Expect = 8.20e-159
Identity = 228/235 (97.02%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60
           MTVKVELQKIGILGLQL+WHFLHLILSSFYFVVGIATTLESYLISCGLLRKYN LSIE+V
Sbjct: 1   MTVKVELQKIGILGLQLMWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNRLSIEIV 60

Query: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120
           KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNA+VFQ
Sbjct: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNASVFQ 120

Query: 121 DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP 180
           DITLEFISISDGKEAVAKAANFLLENK RK NMSEDHRRRFSESQMTEALKAVGCGGPDP
Sbjct: 121 DITLEFISISDGKEAVAKAANFLLENKFRKTNMSEDHRRRFSESQMTEALKAVGCGGPDP 180

Query: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGE 235
           DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYG+
Sbjct: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGK 235

[Close]

BLAST of Cp4.1LG16g01840 vs. NCBI nr
Match: XP_022943676.1 (dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 397 bits (1019), Expect = 6.49e-138
Identity = 203/206 (98.54%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60
           MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV
Sbjct: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60

Query: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120
           KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNA+VFQ
Sbjct: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNASVFQ 120

Query: 121 DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP 180
           DITLEFISISDGKEAVAKAANFLLENK RK NMSEDHRRRFSESQMTEALKAVGCGGPDP
Sbjct: 121 DITLEFISISDGKEAVAKAANFLLENKFRKTNMSEDHRRRFSESQMTEALKAVGCGGPDP 180

Query: 181 DLMLVYGPIRCHLGFPAWRIPYTEIL 206
           DLMLVYGPIRCHLGFPAWRIPYTEIL
Sbjct: 181 DLMLVYGPIRCHLGFPAWRIPYTEIL 206

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BLAST of Cp4.1LG16g01840 vs. ExPASy TrEMBL
Match: A0A6J1FTP6 (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific) OS=Cucurbita moschata OX=3662 GN=LOC111448357 PE=3 SV=1)

HSP 1 Score: 455 bits (1170), Expect = 2.05e-161
Identity = 231/235 (98.30%), Postives = 233/235 (99.15%), Query Frame = 0


Query: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60
           MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV
Sbjct: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60

Query: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120
           KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNA+VFQ
Sbjct: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNASVFQ 120

Query: 121 DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP 180
           DITLEFISISDGKEAVAKAANFLLENK RK NMSEDHRRRFSESQMTEALKAVGCGGPDP
Sbjct: 121 DITLEFISISDGKEAVAKAANFLLENKFRKTNMSEDHRRRFSESQMTEALKAVGCGGPDP 180

Query: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGE 235
           DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYG+
Sbjct: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGK 235

[Close]

BLAST of Cp4.1LG16g01840 vs. ExPASy TrEMBL
Match: A0A6J1JEH3 (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific) OS=Cucurbita maxima OX=3661 GN=LOC111484292 PE=3 SV=1)

HSP 1 Score: 449 bits (1155), Expect = 3.97e-159
Identity = 228/235 (97.02%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60
           MTVKVELQKIGILGLQL+WHFLHLILSSFYFVVGIATTLESYLISCGLLRKYN LSIE+V
Sbjct: 1   MTVKVELQKIGILGLQLMWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNRLSIEIV 60

Query: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120
           KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNA+VFQ
Sbjct: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNASVFQ 120

Query: 121 DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP 180
           DITLEFISISDGKEAVAKAANFLLENK RK NMSEDHRRRFSESQMTEALKAVGCGGPDP
Sbjct: 121 DITLEFISISDGKEAVAKAANFLLENKFRKTNMSEDHRRRFSESQMTEALKAVGCGGPDP 180

Query: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGE 235
           DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYG+
Sbjct: 181 DLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYGK 235

[Close]

BLAST of Cp4.1LG16g01840 vs. ExPASy TrEMBL
Match: A0A6J1FSC8 (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific) OS=Cucurbita moschata OX=3662 GN=LOC111448357 PE=3 SV=1)

HSP 1 Score: 397 bits (1019), Expect = 3.14e-138
Identity = 203/206 (98.54%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60
           MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV
Sbjct: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60

Query: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120
           KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNA+VFQ
Sbjct: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNASVFQ 120

Query: 121 DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP 180
           DITLEFISISDGKEAVAKAANFLLENK RK NMSEDHRRRFSESQMTEALKAVGCGGPDP
Sbjct: 121 DITLEFISISDGKEAVAKAANFLLENKFRKTNMSEDHRRRFSESQMTEALKAVGCGGPDP 180

Query: 181 DLMLVYGPIRCHLGFPAWRIPYTEIL 206
           DLMLVYGPIRCHLGFPAWRIPYTEIL
Sbjct: 181 DLMLVYGPIRCHLGFPAWRIPYTEIL 206

[Close]

BLAST of Cp4.1LG16g01840 vs. ExPASy TrEMBL
Match: A0A6J1JGH2 (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific) OS=Cucurbita maxima OX=3661 GN=LOC111484292 PE=3 SV=1)

HSP 1 Score: 391 bits (1004), Expect = 4.72e-136
Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60
           MTVKVELQKIGILGLQL+WHFLHLILSSFYFVVGIATTLESYLISCGLLRKYN LSIE+V
Sbjct: 1   MTVKVELQKIGILGLQLMWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNRLSIEIV 60

Query: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120
           KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNA+VFQ
Sbjct: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNASVFQ 120

Query: 121 DITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEALKAVGCGGPDP 180
           DITLEFISISDGKEAVAKAANFLLENK RK NMSEDHRRRFSESQMTEALKAVGCGGPDP
Sbjct: 121 DITLEFISISDGKEAVAKAANFLLENKFRKTNMSEDHRRRFSESQMTEALKAVGCGGPDP 180

Query: 181 DLMLVYGPIRCHLGFPAWRIPYTEIL 206
           DLMLVYGPIRCHLGFPAWRIPYTEIL
Sbjct: 181 DLMLVYGPIRCHLGFPAWRIPYTEIL 206

[Close]

BLAST of Cp4.1LG16g01840 vs. ExPASy TrEMBL
Match: A0A6J1L7W1 (Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate specific) OS=Cucurbita maxima OX=3661 GN=LOC111499983 PE=3 SV=1)

HSP 1 Score: 386 bits (992), Expect = 6.46e-134
Identity = 200/246 (81.30%), Postives = 214/246 (86.99%), Query Frame = 0


Query: 1   MTVKVELQKIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMV 60
           MT+KVELQKIGILGLQLIW FLH I+SSFYFVV IATTLESYLISCG LRKYNHL I  V
Sbjct: 1   MTIKVELQKIGILGLQLIWIFLHFIVSSFYFVVSIATTLESYLISCGFLRKYNHLDINRV 60

Query: 61  KYLAIVVDSDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQ 120
           +YLAIVV+SDEAYNTLKIIELLQWL S+GIRS+CLYD EGVLKQSKEIILKKV NA+VFQ
Sbjct: 61  QYLAIVVESDEAYNTLKIIELLQWLESMGIRSVCLYDAEGVLKQSKEIILKKVKNASVFQ 120

Query: 121 D-----------ITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRRFSESQMTEA 180
           +            TLEFIS SDGKEAVA+AA+FLL++K RK NMS D  + FSESQMTEA
Sbjct: 121 ETNEPLQLNCKGFTLEFISASDGKEAVARAASFLLKDKWRKTNMSGDSNQCFSESQMTEA 180

Query: 181 LKAVGCGGPDPDLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMV 235
           LKAVGCGGPDPDL+LVYGP RCHLGFPAWRI YTEILHMGPLKS KYGSLVKAIYKFTMV
Sbjct: 181 LKAVGCGGPDPDLILVYGPSRCHLGFPAWRIRYTEILHMGPLKSKKYGSLVKAIYKFTMV 240

[Close]

BLAST of Cp4.1LG16g01840 vs. TAIR 10
Match: AT1G11755.1 (Undecaprenyl pyrophosphate synthetase family protein )

HSP 1 Score: 226.5 bits (576), Expect = 2.3e-59
Identity = 116/238 (48.74%), Postives = 165/238 (69.33%), Query Frame = 0


Query: 9   KIGILGLQLIWHFLHLILSSFYFVVGIATTLESYLISCGLLRKYNHLSIEMVKYLAIVVD 68
           +IG LGL L+W F+H+++S +Y V GI   +ESY I+ GL +KY  + +E ++ LA+VVD
Sbjct: 16  QIGDLGLNLLWRFIHIVVSLWYIVSGIFEAIESYAITLGLNKKYGSIDLEKLRCLAVVVD 75

Query: 69  SDEAYNTLKIIELLQWLASLGIRSICLYDVEGVLKQSKEIILKKVNNATVFQD------- 128
            + A +   ++ELLQWL ++G++ + L+D +G+LK+SK++IL+ V  + + ++       
Sbjct: 76  IEAAQDVANVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETVPGSMLLEEIEKDVAP 135

Query: 129 ----ITLEFISISDGKEAVAKAANFLLENKLRKMNMSEDHRRR-FSESQMTEALKAVGCG 188
               I LEFIS SD KEAV KAAN LL+  L+  +  +D     F+ES + +AL+ VG  
Sbjct: 136 DGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPEDDKGEDFFTESHLNDALRVVGEN 195

Query: 189 GPDPDLMLVYGPIRCHLGFPAWRIPYTEILHMGPLKSMKYGSLVKAIYKFTMVRQNYG 235
              PDL+LVYGPIR HLGFPAWR+ YTEI+HMG LK M+YGSL+KAI+KFT V QNYG
Sbjct: 196 VHVPDLLLVYGPIRSHLGFPAWRLRYTEIVHMGTLKYMRYGSLLKAIHKFTGVHQNYG 253

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g01840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96E22	1.8e-08	20.92	Dehydrodolichyl diphosphate synthase complex subunit NUS1 OS=Homo sapiens OX=960...	[more]
Q9Y7K8	6.7e-08	21.67	Dehydrodolichyl diphosphate synthase complex subunit nus1 OS=Schizosaccharomyces...	[more]
Q99LJ8	1.7e-06	22.95	Dehydrodolichyl diphosphate synthase complex subunit Nus1 OS=Mus musculus OX=100...	[more]

BLAST of Cp4.1LG16g01840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513355.1	3.11e-163	99.57	dehydrodolichyl diphosphate synthase complex subunit nus1-like [Cucurbita pepo s...	[more]
XP_022943677.1	4.24e-161	98.30	dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X2 [Cucur...	[more]
KAG6571185.1	4.15e-159	97.87	Anaphase-promoting complex subunit 13, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022986600.1	8.20e-159	97.02	dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X2 [Cucur...	[more]
XP_022943676.1	6.49e-138	98.54	dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X1 [Cucur...	[more]

BLAST of Cp4.1LG16g01840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTP6	2.05e-161	98.30	Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate spe...	[more]
A0A6J1JEH3	3.97e-159	97.02	Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate spe...	[more]
A0A6J1FSC8	3.14e-138	98.54	Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate spe...	[more]
A0A6J1JGH2	4.72e-136	97.09	Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate spe...	[more]
A0A6J1L7W1	6.46e-134	81.30	Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyldiphosphate spe...	[more]

BLAST of Cp4.1LG16g01840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11755.1	2.3e-59	48.74	Undecaprenyl pyrophosphate synthetase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036424	Decaprenyl diphosphate synthase-like superfamily	GENE3D	3.40.1180.10		coord: 59..235 e-value: 4.6E-9 score: 37.8
IPR036424	Decaprenyl diphosphate synthase-like superfamily	SUPERFAMILY	64005	Undecaprenyl diphosphate synthase	coord: 61..227
IPR038887	Dehydrodolichyl diphosphate synthase complex subunit Nus1	PANTHER	PTHR21528	UNCHARACTERIZED	coord: 8..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g01840.1	Cp4.1LG16g01840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019408	dolichol biosynthetic process
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0009645	response to low light intensity stimulus
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:1904423	dehydrodolichyl diphosphate synthase complex
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0045547	dehydrodolichyl diphosphate synthase activity
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups