Cp4.1LG16g01260 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAGTTACTTGTTCAATTGGTCCACGAAATTTCTACGATCGGTTGAATGGGTGATCCATAGAGCGAAGTTCATGCGGGAGAGGATGAGATGAGAACGCCCTGGTGGCGGCCTCCTAGATTCCATGGAAACTCATAAAACTTACCTAAATATTTTGGATATTTTTGGAGGTCAGAATCTTGAAATCATGGCGGTATGATGTCAACATCCTTTCTGTCTCTTTCTCTTTCTCCTTCTGTGGAATCTTCCACCTGCTTTTTTATGCTTCTCTTCTGCCATGCCATACGACACCGCAGACTTCTTCTTCCAAATTCATATGCGCAGAGGAGAGGGGAGGAGAAGAATGGATTCGGCTGCTGTTTGGGCGGTAGGGATGGACTTCGACCCGGAGATTGATCGTTTGCCGATTGACCTACTCGCTCATATTTTTGCCATGATCACGTCCTTCACCGATTTGGCTCAGTAATTCATGTTAATTTTTTGGTTTTCTTTATGAATCTCTTTTCTTCAATTGCTTTTGTTCTTGTTCCTAATTTTGGGGGTTTCTGCGGAAAATTTTCCGGAAAAACGCAGGGCGTGCGCCGTTTGTCGGAAATGGAAGGAAGGAGTTAAACTCTCTCTTGGTAGGAAGGAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGATGACTCCACTGCTCGCCTTATTCGCCATGCCTACAGTCTTCGAGACCTCGACATGTAATCCCTCTCTCTCTCTCTCTAGAATGATCAAAAGAGTTTTTCAAAATCGCAGGATAATCAATTCAATCGGCTTTCTGTTTCCATTGTCTGTTTATCATTAATCAGGCAATTTGATTATGAACCACATAAACAGAGGTTTCTCTTGAGATTGGAGTCTTCGAAAATGAAATGCTGGAGAAAGTTCTCTAAAATTGTTTTATAAAGCTTTGTTAGATTCTCGATGGTTATGGATTATGGCTATGGCTGCCTTCGTTGTTGTAGTGTCTAGTCGAGCAAAGTGCTAGCCCCCATGATTCTGTTGTAATTTGTGCTTTTTCAGCTCAAGAAGCCGTTGGGGTTGCCAAATAACAGACCATGGATTGCACCAAATCTCTCTTGCAAGCTGCATTCCCAACCTCACGTCCATTTCGCTATGGGGCATGGCAGGGATCACCGACAAGGGGGTTGTGCAGCTGGTATCATATTATCTTATCTTTACTCCAAACATGCCTGCATAAATAGCCCTTCAAATTGGCCTCAATCTGTGAATCAGAGTATGAGTTTAGGTGGAAATTGAGTAGGGTATTTGTTGTTTCTATCTTCATTGATCTTTGCACCAATATGTTTTCAGTATTTCTTACTTATTTTGGATCTTCTAGTGTCTATCTTCGAAAAGTAAACAACAATTTAAGGAAATCATCCTGTCCTGAAGTTATTTCATGTTCTTCAGAGGAATTTAGGAGGCAGTTTTAGACAACATTTTGTATTCTCTGCTTCCAGAACCTTTTTGAAGGTCGAGGTTATTCTTAGGAATCATGGATCTCACAATAATATGATATTGTCCACTTTGAACATAAGCTCTTATAGCTTTACCTTGTGTTTCCCCCAAAAGGTTTCATATCAATGGAGATGTATTCCTCACTTATAGATGCCATGATCATTCCCTAAATTAGCCAATGTAGGACTCCCTCTCAACCATCCTCAACCATTATTACCGTGCTGATTGCTTGTGTCTATAGGCTACCTCTCTTATCCGCTTCTCTACAAGATTGACTTTCTTCTTCCTTCAAATTGGACCAAGTCTTTAGGTTGTTTAGGTAGGTTGGGCTAGGTTGTTAAGGTTGATCTTTTGGAGTGATCTTCAATCAGGGTCCTCGCATCCACTTTCCACGTTCTGATGTCGTACATGGTTCATTAACATTTGTGCATTCGGTTGTGTTCCCAGATTTCCAGAGCCAACTCCTTGCAAAACCTGAATGTCGGTGGCACCTTTGTCACAGATGTCTCTATACTTGCAATTGCGGATAACTGTCCAAATTTGAAGGTGAACATTCTAAGAAACTCCTCTTCCATTGCAGTGCCTTTCTCGAGGTTTATGAACCATATAACACCATTCATGACATGCACAATCTTTAATCACTGCATTTCTTCCTTCCTTTCTGCAGAGCATTGTCCTGTGGAGCTGTCGCCATGTAACAGAGAGTGGACTTCTTATTCTTGTAAGTAAATGTCGAAAACTCGAGTCGATAAATGTCTGGGGAATGAGGGTACCTGTAGACTGCTTCATTGGTTTGGTGGCCATAAGTCCATCACTTCAAATAAAATCAAGAAGTCTGCTTCTAAATTCTATGTGGCCAGTCGTATGAAATATATGATCTCTAATATTGTATCCTGTAAAGCTTCCATTTTAAGCATGTCTTCATCCTTGTGTTTTTCCTTATTCTTCCACCCCCAATAAGCTGCCTATGGTTCTTCCAGTTCATCTAAAACTGAACTCTTTTCTCCTCAAGTAAATATAATAAGGGTATGTAAAAACTATGCTGTCTTATTTTGGGGCTAAATGTATTTGTATCCCTATGGTCCCATAAATACATTTCTTTGGTTCCTCAATCTTAAGATTTGCCCATAATTTCTTTAGATCCAACTAATTCTT AGAAGTTACTTGTTCAATTGGTCCACGAAATTTCTACGATCGGTTGAATGGGTGATCCATAGAGCGAAGTTCATGCGGGAGAGGATGAGATGAGAACGCCCTGGTGGCGGCCTCCTAGATTCCATGGAAACTCATAAAACTTACCTAAATATTTTGGATATTTTTGGAGGTCAGAATCTTGAAATCATGGCGACTTCTTCTTCCAAATTCATATGCGCAGAGGAGAGGGGAGGAGAAGAATGGATTCGGCTGCTGTTTGGGCGGTAGGGATGGACTTCGACCCGGAGATTGATCGTTTGCCGATTGACCTACTCGCTCATATTTTTGCCATGATCACGTCCTTCACCGATTTGGCTCAGGCGTGCGCCGTTTGTCGGAAATGGAAGGAAGGAGTTAAACTCTCTCTTGGTAGGAAGGAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGATGACTCCACTGCTCGCCTTATTCGCCATGCCTACAGTCTTCGAGACCTCGACATGCAATTTGATTATGAACCACATAAACAGAGCTCAAGAAGCCGTTGGGGTTGCCAAATAACAGACCATGGATTGCACCAAATCTCTCTTGCAAGCTGCATTCCCAACCTCACGTCCATTTCGCTATGGGGCATGGCAGGGATCACCGACAAGGGGGTTGTGCAGCTGATTTCCAGAGCCAACTCCTTGCAAAACCTGAATGTCGGTGGCACCTTTGTCACAGATGTCTCTATACTTGCAATTGCGGATAACTGTCCAAATTTGAAGAGCATTGTCCTGTGGAGCTGTCGCCATGTAACAGAGAGTGGACTTCTTATTCTTGTAAGTAAATGTCGAAAACTCGAGTCGATAAATGTCTGGGGAATGAGGGTACCTGTAGACTGCTTCATTGGTTTGGTGGCCATAAGTCCATCACTTCAAATAAAATCAAGAAGTCTGCTTCTAAATTCTATGTGGCCAGTCGTATGAAATATATGATCTCTAATATTGTATCCTGTAAAGCTTCCATTTTAAGCATGTCTTCATCCTTGTGTTTTTCCTTATTCTTCCACCCCCAATAAGCTGCCTATGGTTCTTCCAGTTCATCTAAAACTGAACTCTTTTCTCCTCAAGTAAATATAATAAGGGTATGTAAAAACTATGCTGTCTTATTTTGGGGCTAAATGTATTTGTATCCCTATGGTCCCATAAATACATTTCTTTGGTTCCTCAATCTTAAGATTTGCCCATAATTTCTTTAGATCCAACTAATTCTT ATGCGCAGAGGAGAGGGGAGGAGAAGAATGGATTCGGCTGCTGTTTGGGCGGTAGGGATGGACTTCGACCCGGAGATTGATCGTTTGCCGATTGACCTACTCGCTCATATTTTTGCCATGATCACGTCCTTCACCGATTTGGCTCAGGCGTGCGCCGTTTGTCGGAAATGGAAGGAAGGAGTTAAACTCTCTCTTGGTAGGAAGGAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGATGACTCCACTGCTCGCCTTATTCGCCATGCCTACAGTCTTCGAGACCTCGACATGCAATTTGATTATGAACCACATAAACAGAGCTCAAGAAGCCGTTGGGGTTGCCAAATAACAGACCATGGATTGCACCAAATCTCTCTTGCAAGCTGCATTCCCAACCTCACGTCCATTTCGCTATGGGGCATGGCAGGGATCACCGACAAGGGGGTTGTGCAGCTGATTTCCAGAGCCAACTCCTTGCAAAACCTGAATGTCGGTGGCACCTTTGTCACAGATGTCTCTATACTTGCAATTGCGGATAACTGTCCAAATTTGAAGAGCATTGTCCTGTGGAGCTGTCGCCATGTAACAGAGAGTGGACTTCTTATTCTTGTAAGTAAATGTCGAAAACTCGAGTCGATAAATGTCTGGGGAATGAGGGTACCTGTAGACTGCTTCATTGGTTTGGTGGCCATAAGTCCATCACTTCAAATAAAATCAAGAAGTCTGCTTCTAAATTCTATGTGGCCAGTCGTATGA MRRGEGRRRMDSAAVWAVGMDFDPEIDRLPIDLLAHIFAMITSFTDLAQACAVCRKWKEGVKLSLGRKESLSFAGWKMDDDSTARLIRHAYSLRDLDMQFDYEPHKQSSRSRWGCQITDHGLHQISLASCIPNLTSISLWGMAGITDKGVVQLISRANSLQNLNVGGTFVTDVSILAIADNCPNLKSIVLWSCRHVTESGLLILVSKCRKLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLLNSMWPVV Homology
BLAST of Cp4.1LG16g01260 vs. ExPASy Swiss-Prot
Match: Q9FH99 (F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 3.4e-82 Identity = 146/231 (63.20%), Postives = 183/231 (79.22%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. ExPASy Swiss-Prot
Match: Q9SKK0 (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 3.7e-12 Identity = 39/112 (34.82%), Postives = 66/112 (58.93%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. ExPASy Swiss-Prot
Match: O49286 (F-box protein SKP2B OS=Arabidopsis thaliana OX=3702 GN=SKP2B PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.8e-11 Identity = 57/216 (26.39%), Postives = 100/216 (46.30%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. ExPASy Swiss-Prot
Match: Q9LPL4 (F-box protein SKP2A OS=Arabidopsis thaliana OX=3702 GN=SKP2A PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09 Identity = 51/217 (23.50%), Postives = 101/217 (46.54%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. ExPASy Swiss-Prot
Match: Q8LB33 (F-box protein At3g58530 OS=Arabidopsis thaliana OX=3702 GN=At3g58530 PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08 Identity = 33/107 (30.84%), Postives = 64/107 (59.81%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. NCBI nr
Match: XP_023512670.1 (F-box protein At5g67140-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 483 bits (1242), Expect = 1.15e-171 Identity = 241/252 (95.63%), Postives = 242/252 (96.03%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. NCBI nr
Match: XP_023512668.1 (F-box protein At5g67140-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512669.1 F-box protein At5g67140-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 483 bits (1242), Expect = 1.85e-171 Identity = 241/252 (95.63%), Postives = 242/252 (96.03%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. NCBI nr
Match: XP_022927967.1 (F-box protein At5g67140-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 474 bits (1219), Expect = 3.69e-168 Identity = 236/252 (93.65%), Postives = 240/252 (95.24%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. NCBI nr
Match: XP_022927966.1 (F-box protein At5g67140-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 474 bits (1219), Expect = 5.92e-168 Identity = 236/252 (93.65%), Postives = 240/252 (95.24%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. NCBI nr
Match: KAG7015628.1 (F-box protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 467 bits (1201), Expect = 3.28e-165 Identity = 233/252 (92.46%), Postives = 238/252 (94.44%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. ExPASy TrEMBL
Match: A0A6J1EIM3 (F-box protein At5g67140-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434817 PE=4 SV=1) HSP 1 Score: 474 bits (1219), Expect = 1.78e-168 Identity = 236/252 (93.65%), Postives = 240/252 (95.24%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. ExPASy TrEMBL
Match: A0A6J1EIZ0 (F-box protein At5g67140-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434817 PE=4 SV=1) HSP 1 Score: 474 bits (1219), Expect = 2.87e-168 Identity = 236/252 (93.65%), Postives = 240/252 (95.24%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. ExPASy TrEMBL
Match: A0A6J1J645 (F-box protein At5g67140-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483796 PE=4 SV=1) HSP 1 Score: 462 bits (1189), Expect = 6.68e-164 Identity = 231/252 (91.67%), Postives = 236/252 (93.65%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. ExPASy TrEMBL
Match: A0A6J1J9G2 (F-box protein At5g67140-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483796 PE=4 SV=1) HSP 1 Score: 462 bits (1189), Expect = 1.07e-163 Identity = 231/252 (91.67%), Postives = 236/252 (93.65%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. ExPASy TrEMBL
Match: A0A1S4E1P2 (F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1) HSP 1 Score: 423 bits (1088), Expect = 1.15e-148 Identity = 209/243 (86.01%), Postives = 224/243 (92.18%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. TAIR 10
Match: AT5G67140.1 (F-box/RNI-like superfamily protein ) HSP 1 Score: 306.2 bits (783), Expect = 2.4e-83 Identity = 146/231 (63.20%), Postives = 183/231 (79.22%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. TAIR 10
Match: AT2G25490.1 (EIN3-binding F box protein 1 ) HSP 1 Score: 73.6 bits (179), Expect = 2.6e-13 Identity = 39/112 (34.82%), Postives = 66/112 (58.93%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. TAIR 10
Match: AT1G77000.1 (RNI-like superfamily protein ) HSP 1 Score: 71.2 bits (173), Expect = 1.3e-12 Identity = 57/216 (26.39%), Postives = 100/216 (46.30%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. TAIR 10
Match: AT1G77000.2 (RNI-like superfamily protein ) HSP 1 Score: 71.2 bits (173), Expect = 1.3e-12 Identity = 57/216 (26.39%), Postives = 100/216 (46.30%), Query Frame = 0
BLAST of Cp4.1LG16g01260 vs. TAIR 10
Match: AT1G21410.1 (F-box/RNI-like superfamily protein ) HSP 1 Score: 64.3 bits (155), Expect = 1.6e-10 Identity = 51/217 (23.50%), Postives = 101/217 (46.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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