Cp4.1LG16g01030 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g01030
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG16: 1855254 .. 1856567 (-)
RNA-Seq Expression	Cp4.1LG16g01030
Synteny	Cp4.1LG16g01030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACTGAGCGAAAGAAAATCCGAGAAAAGGTCAAATGAGGAAGGGACCTGAAATGCATAATAAACAATGGCGACGAGCGTCCTGTAATTCACTCACTCGGACTTTCGGAGAACTGAAGCGCACGGGCGCAGGAACCGACTTCAATCCGCACACAGCACTGTGGATTTGACTGATTGCTTCGATGATTGATTGATTGATTGATTCATTCTTTCATTCGGGTTCGAAAGAGTGGATTTGTTCGAGCTAAAGTTCAAGCAAGAGTTGAGTTCTTCCTTTTATCTGTAATCTTCATTTCTTGTTTGTTTATTCGAAGAAATCATCGAGACACCATCATCCATCTGTGAATCATTACGGGACAGATACAGAATTGGGATTTAAGTTATAGGTCATCTTTCTTCTGCCCCCACTGGGTTAGGGTTTTCTTTTCCGTTTTTCTTTTGGGTTTCACTCTATATTTATACATCCATCTTACTCTCACTGCCTCTGAGTTGTTTAAATGTCCAAAAGTGGGAGGTGGCACGCCTACGACCCAATTCTGCTGCTGAATTTAACGCCGGTTTGAGACGCAGGGCCATTCTGGTTCGGATCATTCCTCTATTAGTTGTTTGGAGCTAAATTTGAGCTAGAAGTAGAAGATGGAAAATGGTTTCGAGGGGAGATCATTGGCTGAAAAATTCTCGGAGTTGGGCGTCAGTGCTGCTCCAGCAGAGCAATCTAACTCCCTCTCATCCAACAATCACGGTAACAACAACGATAGCAACTTGTTTCAGGTTTTGAAAGCTGTTGAAGCAGCCGAGGCTACCATCAAGCAACAGGTGCAACGAATTGTCCTTCCTCCCTCTCATTTCCTTTCTCCCAGCATCTCAACTTCATTATTACTTCCTCACGTTTTCTTTCTAAAACCCATTTCACGTTTTCAATTTTCAACATAATGTACCGTTAATTGAGTATTATTTCCTTCATTAAGAATGTTGTAGGAATGTAGAGAGACGTGCTGCAGGACCCGAACCTTTTTACTTCATCGAAAATCTGTTCACCCTTTCTGTGCAATTATCCATACCAGAAAATTCACCTGCTTGTTCCTGATCCTAGTTTGCATTTTTAATGACCCATTACCGTTTTACATATCACGCCACGAACATTTGACTAAATTATACTATAAATATTGTGGCTACAGCTCAGCCTCCATAGTTTAATGTTATATGCTGATATGAGTGTATTTAAATACTATTAGGTGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAATGTGTAAGTACTATAAGCTGA

mRNA sequence

TACTGAGCGAAAGAAAATCCGAGAAAAGGTCAAATGAGGAAGGGACCTGAAATGCATAATAAACAATGGCGACGAGCGTCCTGTAATTCACTCACTCGGACTTTCGGAGAACTGAAGCGCACGGGCGCAGGAACCGACTTCAATCCGCACACAGCACTGTGGATTTGACTGATTGCTTCGATGATTGATTGATTGATTGATTCATTCTTTCATTCGGGTTCGAAAGAGTGGATTTGTTCGAGCTAAAGTTCAAGCAAGAGGGCCATTCTGGTTCGGATCATTCCTCTATTAGTTGTTTGGAGCTAAATTTGAGCTAGAAGTAGAAGATGGAAAATGGTTTCGAGGGGAGATCATTGGCTGAAAAATTCTCGGAGTTGGGCGTCAGTGCTGCTCCAGCAGAGCAATCTAACTCCCTCTCATCCAACAATCACGGTAACAACAACGATAGCAACTTGTTTCAGGTTTTGAAAGCTGTTGAAGCAGCCGAGGCTACCATCAAGCAACAGGTGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAATGTGTAAGTACTATAAGCTGA

Coding sequence (CDS)

ATGGAAAATGGTTTCGAGGGGAGATCATTGGCTGAAAAATTCTCGGAGTTGGGCGTCAGTGCTGCTCCAGCAGAGCAATCTAACTCCCTCTCATCCAACAATCACGGTAACAACAACGATAGCAACTTGTTTCAGGTTTTGAAAGCTGTTGAAGCAGCCGAGGCTACCATCAAGCAACAGGTGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAATGTGTAAGTACTATAAGCTGA

Protein sequence

MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQVEENNRLRIELQKKIQELEKCVSTIS

Homology

[Close]

BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match: XP_023512329.1 (uncharacterized protein LOC111777114 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149 bits (377), Expect = 1.01e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKCV 82
          VEENNRLRIELQKKIQELEKCV
Sbjct: 61 VEENNRLRIELQKKIQELEKCV 82

[Close]

BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match: XP_022931996.1 (uncharacterized protein LOC111438327 isoform X2 [Cucurbita moschata])

HSP 1 Score: 149 bits (377), Expect = 1.01e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKCV 82
          VEENNRLRIELQKKIQELEKCV
Sbjct: 61 VEENNRLRIELQKKIQELEKCV 82

[Close]

BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match: KAG6571327.1 (hypothetical protein SDJN03_30242, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148 bits (373), Expect = 2.63e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKC 81
          VEENNRLRIELQKKIQELEKC
Sbjct: 61 VEENNRLRIELQKKIQELEKC 81

[Close]

BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match: XP_023512330.1 (uncharacterized protein LOC111777114 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148 bits (373), Expect = 3.25e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKC 81
          VEENNRLRIELQKKIQELEKC
Sbjct: 61 VEENNRLRIELQKKIQELEKC 81

[Close]

BLAST of Cp4.1LG16g01030 vs. NCBI nr
Match: XP_023512328.1 (uncharacterized protein LOC111777114 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148 bits (373), Expect = 3.58e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKC 81
          VEENNRLRIELQKKIQELEKC
Sbjct: 61 VEENNRLRIELQKKIQELEKC 81

[Close]

BLAST of Cp4.1LG16g01030 vs. ExPASy TrEMBL
Match: A0A6J1EV49 (uncharacterized protein LOC111438327 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111438327 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 4.87e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKCV 82
          VEENNRLRIELQKKIQELEKCV
Sbjct: 61 VEENNRLRIELQKKIQELEKCV 82

[Close]

BLAST of Cp4.1LG16g01030 vs. ExPASy TrEMBL
Match: A0A6J1F0Z2 (uncharacterized protein LOC111438327 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438327 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 1.73e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKC 81
          VEENNRLRIELQKKIQELEKC
Sbjct: 61 VEENNRLRIELQKKIQELEKC 81

[Close]

BLAST of Cp4.1LG16g01030 vs. ExPASy TrEMBL
Match: A0A6J1I8L1 (uncharacterized protein LOC111472378 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472378 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 3.25e-39
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNH NNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHSNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKCV 82
          VEENNRLRIELQKKIQELEKCV
Sbjct: 61 VEENNRLRIELQKKIQELEKCV 82

[Close]

BLAST of Cp4.1LG16g01030 vs. ExPASy TrEMBL
Match: A0A6J1IEA9 (uncharacterized protein LOC111472378 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472378 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 1.06e-38
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNH NNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHSNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKC 81
          VEENNRLRIELQKKIQELEKC
Sbjct: 61 VEENNRLRIELQKKIQELEKC 81

[Close]

BLAST of Cp4.1LG16g01030 vs. ExPASy TrEMBL
Match: A0A6J1ICC7 (uncharacterized protein LOC111472378 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472378 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 1.16e-38
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNH NNNDSNLFQVLKAVEAAEATIKQQ
Sbjct: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHSNNNDSNLFQVLKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEKC 81
          VEENNRLRIELQKKIQELEKC
Sbjct: 61 VEENNRLRIELQKKIQELEKC 81

[Close]

BLAST of Cp4.1LG16g01030 vs. TAIR 10
Match: AT5G08440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 141 Blast hits to 139 proteins in 35 species: Archae - 0; Bacteria - 9; Metazoa - 21; Fungi - 6; Plants - 94; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          M+NG E R LAE+FS +G+  +     N +        NDS LFQV+KAVEAAEATIKQQ
Sbjct: 1  MDNGHEER-LAERFSGVGLGESSGSHENDV-------KNDS-LFQVIKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          VEENN L+ ELQ++  EL K
Sbjct: 61 VEENNLLKAELQRRYLELAK 71

[Close]

BLAST of Cp4.1LG16g01030 vs. TAIR 10
Match: AT5G08440.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1). )

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          M+NG E R LAE+FS +G+  +     N +        NDS LFQV+KAVEAAEATIKQQ
Sbjct: 1  MDNGHEER-LAERFSGVGLGESSGSHENDV-------KNDS-LFQVIKAVEAAEATIKQQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          VEENN L+ ELQ++  EL K
Sbjct: 61 VEENNLLKAELQRRYLELAK 71

[Close]

BLAST of Cp4.1LG16g01030 vs. TAIR 10
Match: AT5G23490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-11
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MENGFEGRSLAEKFSELGVSAAPAEQSNSLSSNNHGNNNDSNLFQVLKAVEAAEATIKQQ 60
          MENG E R LAE+FS LG      E S+ L  N   N+   NLFQV+KAVEAAE TIK+Q
Sbjct: 1  MENGHEER-LAERFSGLGF-----EDSSLLPENEFKND---NLFQVIKAVEAAETTIKEQ 60

Query: 61 VEENNRLRIELQKKIQELEK 81
          VEEN+RL+ ELQ+   EL K
Sbjct: 61 VEENSRLKAELQRSALELAK 71

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g01030 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g01030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512329.1	1.01e-39	100.00	uncharacterized protein LOC111777114 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022931996.1	1.01e-39	100.00	uncharacterized protein LOC111438327 isoform X2 [Cucurbita moschata]	[more]
KAG6571327.1	2.63e-39	100.00	hypothetical protein SDJN03_30242, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023512330.1	3.25e-39	100.00	uncharacterized protein LOC111777114 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023512328.1	3.58e-39	100.00	uncharacterized protein LOC111777114 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG16g01030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EV49	4.87e-40	100.00	uncharacterized protein LOC111438327 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F0Z2	1.73e-39	100.00	uncharacterized protein LOC111438327 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I8L1	3.25e-39	98.78	uncharacterized protein LOC111472378 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IEA9	1.06e-38	98.77	uncharacterized protein LOC111472378 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ICC7	1.16e-38	98.77	uncharacterized protein LOC111472378 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Cp4.1LG16g01030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08440.1	1.9e-11	55.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G08440.2	1.9e-11	55.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G23490.1	3.2e-11	57.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 50..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..41
None	No IPR available	PANTHER	PTHR31149	EXPRESSED PROTEIN	coord: 6..83
None	No IPR available	PANTHER	PTHR31149:SF10	OS05G0100900 PROTEIN	coord: 6..83
None	No IPR available	SUPERFAMILY	58022	XRCC4, C-terminal oligomerization domain	coord: 44..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g01030.1	Cp4.1LG16g01030.1	mRNA