Cp4.1LG16g00750 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g00750
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	UPF0235 protein C15orf40 homolog
Location	Cp4.1LG16: 1464154 .. 1464795 (-)
RNA-Seq Expression	Cp4.1LG16g00750
Synteny	Cp4.1LG16g00750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATATTAAAAATTGAAGGGAGAAGAAAATGGCTCCGGCGAAGAAGGGGAAAACGAAAGCTCCGAAAGGTACTGAATCAATTGAATCGTGCCTCAAAACGAACAATTACCCTTCTTGTCTTCGCTCTGTTTCTTCTTCTTCCGTCGCCATTACCATCCACGCAAAGCCTGGCTCCAAGATCGCCTCTATCACAGGTATTTCTCTCTCTCCTTCGCTCTAACTCTTTTCCGTTTATGAAATTGAAGTATTATGTTTCTCGAAATCCTTGCAGATTTTGGCGATGATGCGTTGGGAGTGCAAATCGACGCACCGGCGAAAGATGGAGAAGCTAATGCTGCGCTTCTTGATTACATGAGCTCTGTGAGTTGGGCATTCTTTGCTGCTTATTATTTGATTTCGAATTGCTTTTTCATTCCTAGTACTTGAACTTTCATTGCGCCATTTAACCATTTGGCTTAAAGTTGAAATTGATTGTTTTTGTTGTTTGGGATTTTTGGTGAAGATTCCGAAAATTGGAATTGTTTTGAGCGTATTGGTCTAGCGAACGGATTCTATTGCTGTTCTTAGTTTGTTGAAAATCCGGTGTTTGATCACCCATTTGAATTTGAAGGCTGTTATTCCTGTTGCTCGAAGGATTTGA

mRNA sequence

CAAAATATTAAAAATTGAAGGGAGAAGAAAATGGCTCCGGCGAAGAAGGGGAAAACGAAAGCTCCGAAAGGTACTGAATCAATTGAATCGTGCCTCAAAACGAACAATTACCCTTCTTGTCTTCGCTCTGTTTCTTCTTCTTCCGTCGCCATTACCATCCACGCAAAGCCTGGCTCCAAGATCGCCTCTATCACAGATTTTGGCGATGATGCGTTGGGAGTGCAAATCGACGCACCGGCGAAAGATGGAGAAGCTAATGCTGCGCTTCTTGATTACATGAGCTCTCGAACGGATTCTATTGCTGTTCTTAGTTTGTTGAAAATCCGGTGTTTGATCACCCATTTGAATTTGAAGGCTGTTATTCCTGTTGCTCGAAGGATTTGA

Coding sequence (CDS)

ATGGCTCCGGCGAAGAAGGGGAAAACGAAAGCTCCGAAAGGTACTGAATCAATTGAATCGTGCCTCAAAACGAACAATTACCCTTCTTGTCTTCGCTCTGTTTCTTCTTCTTCCGTCGCCATTACCATCCACGCAAAGCCTGGCTCCAAGATCGCCTCTATCACAGATTTTGGCGATGATGCGTTGGGAGTGCAAATCGACGCACCGGCGAAAGATGGAGAAGCTAATGCTGCGCTTCTTGATTACATGAGCTCTCGAACGGATTCTATTGCTGTTCTTAGTTTGTTGAAAATCCGGTGTTTGATCACCCATTTGAATTTGAAGGCTGTTATTCCTGTTGCTCGAAGGATTTGA

Protein sequence

MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMSSRTDSIAVLSLLKIRCLITHLNLKAVIPVARRI

Homology

[Close]

BLAST of Cp4.1LG16g00750 vs. ExPASy Swiss-Prot
Match: Q505I4 (UPF0235 protein C15orf40 homolog OS=Rattus norvegicus OX=10116 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 35 SSSSVAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMSSRTD 89
          S   V I IHAKPGSK  ++TD   +A+GV I AP  +GEANA L  Y+S   D
Sbjct: 32 SKGFVTIAIHAKPGSKQNAVTDLNTEAVGVAIAAPPSEGEANAELCRYLSKVLD 85

[Close]

BLAST of Cp4.1LG16g00750 vs. ExPASy Swiss-Prot
Match: Q9CRC3 (UPF0235 protein C15orf40 homolog OS=Mus musculus OX=10090 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-06
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 39 VAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMSSRTD 89
          V I IHAKPGS+  ++TD   +A+GV I AP  +GEANA L  Y+S   D
Sbjct: 36 VTIAIHAKPGSRQNAVTDLSTEAVGVAIAAPPSEGEANAELCRYLSKVLD 85

[Close]

BLAST of Cp4.1LG16g00750 vs. ExPASy Swiss-Prot
Match: Q3ZBP8 (UPF0235 protein C15orf40 homolog OS=Bos taurus OX=9913 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 39 VAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMS 85
          V+I IHAKPGSK  ++TD   +A+ V I AP  +GEANA L  Y+S
Sbjct: 36 VSIAIHAKPGSKQNAVTDVTTEAVSVAIAAPPTEGEANAELCRYLS 81

[Close]

BLAST of Cp4.1LG16g00750 vs. ExPASy Swiss-Prot
Match: Q8WUR7 (UPF0235 protein C15orf40 OS=Homo sapiens OX=9606 GN=C15orf40 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 39  VAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMS 85
           V I IHAKPGSK  ++TD   +A+ V I AP  +GEANA L  Y+S
Sbjct: 63  VTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLS 108

[Close]

BLAST of Cp4.1LG16g00750 vs. NCBI nr
Match: KAG7011128.1 (hypothetical protein SDJN02_27926 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165 bits (418), Expect = 1.85e-50
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSS 85
          ALGVQIDAPAKDGEANAALLDYMSS
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSS 85

[Close]

BLAST of Cp4.1LG16g00750 vs. NCBI nr
Match: KAG6571356.1 (hypothetical protein SDJN03_30271, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165 bits (418), Expect = 2.30e-50
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSS 85
          ALGVQIDAPAKDGEANAALLDYMSS
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSS 85

[Close]

BLAST of Cp4.1LG16g00750 vs. NCBI nr
Match: XP_023512400.1 (UPF0235 protein C15orf40 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165 bits (418), Expect = 3.46e-50
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSS 85
          ALGVQIDAPAKDGEANAALLDYMSS
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSS 85

[Close]

BLAST of Cp4.1LG16g00750 vs. NCBI nr
Match: XP_022927983.1 (uncharacterized protein LOC111434889 [Cucurbita moschata])

HSP 1 Score: 160 bits (405), Expect = 3.30e-48
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKA KGTES ESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAQKGTESTESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSS 85
          ALGVQIDAPAKDGEANAALLDYMSS
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSS 85

[Close]

BLAST of Cp4.1LG16g00750 vs. NCBI nr
Match: XP_022971730.1 (UPF0235 protein C15orf40 homolog [Cucurbita maxima])

HSP 1 Score: 155 bits (392), Expect = 3.15e-46
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKAPK TESI+S LK NNYPSCLRSVSSSS+AITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAPKATESIQSSLKPNNYPSCLRSVSSSSIAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSS 85
          ALGVQIDAPAKDGEANAALLDYMSS
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSS 85

[Close]

BLAST of Cp4.1LG16g00750 vs. ExPASy TrEMBL
Match: A0A6J1EMK4 (uncharacterized protein LOC111434889 OS=Cucurbita moschata OX=3662 GN=LOC111434889 PE=3 SV=1)

HSP 1 Score: 160 bits (405), Expect = 1.60e-48
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKA KGTES ESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAQKGTESTESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSS 85
          ALGVQIDAPAKDGEANAALLDYMSS
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSS 85

[Close]

BLAST of Cp4.1LG16g00750 vs. ExPASy TrEMBL
Match: A0A6J1I6J5 (UPF0235 protein C15orf40 homolog OS=Cucurbita maxima OX=3661 GN=LOC111470398 PE=3 SV=1)

HSP 1 Score: 155 bits (392), Expect = 1.53e-46
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKAPK TESI+S LK NNYPSCLRSVSSSS+AITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAPKATESIQSSLKPNNYPSCLRSVSSSSIAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSS 85
          ALGVQIDAPAKDGEANAALLDYMSS
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSS 85

[Close]

BLAST of Cp4.1LG16g00750 vs. ExPASy TrEMBL
Match: A0A0A0LMY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G301550 PE=3 SV=1)

HSP 1 Score: 151 bits (382), Expect = 1.28e-44
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
           M PAKKGKTKAPK TESI+S +K+NNYPSCLRSVS SSVAITIHAKPGSKIASITDFGDD
Sbjct: 29  MPPAKKGKTKAPKATESIQSSVKSNNYPSCLRSVSPSSVAITIHAKPGSKIASITDFGDD 88

Query: 61  ALGVQIDAPAKDGEANAALLDYMSS 85
           ALGVQIDAPAKDGEANAALLDYMSS
Sbjct: 89  ALGVQIDAPAKDGEANAALLDYMSS 113

[Close]

BLAST of Cp4.1LG16g00750 vs. ExPASy TrEMBL
Match: A0A1S3CDI8 (UPF0235 protein LHK_03181 OS=Cucumis melo OX=3656 GN=LOC103499646 PE=3 SV=1)

HSP 1 Score: 150 bits (379), Expect = 3.67e-44
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1   MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
           M PAKKGKTKAPK TESI+S +KTNNYPSCLRSVS SSVAITIHAKPGSKIASITDF DD
Sbjct: 29  MPPAKKGKTKAPKATESIQSSVKTNNYPSCLRSVSPSSVAITIHAKPGSKIASITDFDDD 88

Query: 61  ALGVQIDAPAKDGEANAALLDYMSS 85
           ALGVQIDAPAKDGEANAALLDYMSS
Sbjct: 89  ALGVQIDAPAKDGEANAALLDYMSS 113

[Close]

BLAST of Cp4.1LG16g00750 vs. ExPASy TrEMBL
Match: A0A6J1CR98 (uncharacterized protein LOC111013451 OS=Momordica charantia OX=3673 GN=LOC111013451 PE=3 SV=1)

HSP 1 Score: 135 bits (341), Expect = 8.28e-39
Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          M PAKKGKTKAPK TESI+S    N +PSCLRSV+ SSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MPPAKKGKTKAPKATESIQS----NKFPSCLRSVAPSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSS 85
          ALGVQIDAPAKDGEANAALLDY+S+
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYIST 81

[Close]

BLAST of Cp4.1LG16g00750 vs. TAIR 10
Match: AT1G49170.1 (Protein of unknown function (DUF167) )

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-22
Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAP KKGK K     ES  +  +++++P+CLR ++ SSVAITIHAKPGSK ASITD  D+
Sbjct: 1  MAPTKKGK-KTKSAAES-TTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSDE 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSS 86
          A+GVQIDAPA+DGEANAALL+YMSS
Sbjct: 61 AVGVQIDAPARDGEANAALLEYMSS 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g00750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q505I4	1.4e-06	51.85	UPF0235 protein C15orf40 homolog OS=Rattus norvegicus OX=10116 PE=2 SV=1	[more]
Q9CRC3	2.4e-06	52.00	UPF0235 protein C15orf40 homolog OS=Mus musculus OX=10090 PE=1 SV=1	[more]
Q3ZBP8	2.7e-05	54.35	UPF0235 protein C15orf40 homolog OS=Bos taurus OX=9913 PE=2 SV=1	[more]
Q8WUR7	2.7e-05	54.35	UPF0235 protein C15orf40 OS=Homo sapiens OX=9606 GN=C15orf40 PE=1 SV=2	[more]

BLAST of Cp4.1LG16g00750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011128.1	1.85e-50	100.00	hypothetical protein SDJN02_27926 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6571356.1	2.30e-50	100.00	hypothetical protein SDJN03_30271, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023512400.1	3.46e-50	100.00	UPF0235 protein C15orf40 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022927983.1	3.30e-48	97.65	uncharacterized protein LOC111434889 [Cucurbita moschata]	[more]
XP_022971730.1	3.15e-46	94.12	UPF0235 protein C15orf40 homolog [Cucurbita maxima]	[more]

BLAST of Cp4.1LG16g00750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMK4	1.60e-48	97.65	uncharacterized protein LOC111434889 OS=Cucurbita moschata OX=3662 GN=LOC1114348...	[more]
A0A6J1I6J5	1.53e-46	94.12	UPF0235 protein C15orf40 homolog OS=Cucurbita maxima OX=3661 GN=LOC111470398 PE=...	[more]
A0A0A0LMY2	1.28e-44	91.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G301550 PE=3 SV=1	[more]
A0A1S3CDI8	3.67e-44	91.76	UPF0235 protein LHK_03181 OS=Cucumis melo OX=3656 GN=LOC103499646 PE=3 SV=1	[more]
A0A6J1CR98	8.28e-39	84.71	uncharacterized protein LOC111013451 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Cp4.1LG16g00750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49170.1	4.2e-22	65.88	Protein of unknown function (DUF167)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003746	Protein of unknown function DUF167	SMART	SM01152	DUF167_2	coord: 35..100 e-value: 7.4E-10 score: 48.7
IPR003746	Protein of unknown function DUF167	PFAM	PF02594	DUF167	coord: 39..86 e-value: 5.5E-12 score: 45.6
IPR036591	YggU-like superfamily	GENE3D	3.30.1200.10		coord: 29..94 e-value: 2.8E-13 score: 51.4
IPR036591	YggU-like superfamily	SUPERFAMILY	69786	YggU-like	coord: 29..86
None	No IPR available	PANTHER	PTHR47817	OS04G0686300 PROTEIN	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g00750.1	Cp4.1LG16g00750.1	mRNA