Cp4.1LG16g00470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g00470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG16: 221498 .. 221773 (+)
RNA-Seq ExpressionCp4.1LG16g00470
SyntenyCp4.1LG16g00470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGATTCGAATGCGTCGAAAAGTGCAAAGCTTGCGAAGGAACAGAAATGGGCAGAAGAAGATGCAACATTTTTGCGAGCACTAAGCACAAAGAAGAAGAACATGACAGAGATGGCATCTTCATCTTCTTCTTCATCTGGGATTGAAACACAGAGGAGTATCGATACAATTAACCATTCGAGGCAAAGGTATTTGAGAAGCTACCCGTTAAGCGACGACAAGGAGAAGACAAACAACAAGGGCATTTGGAAGTTCTTCGGCTGCTTCACTTAA

mRNA sequence

ATGACGGATTCGAATGCGTCGAAAAGTGCAAAGCTTGCGAAGGAACAGAAATGGGCAGAAGAAGATGCAACATTTTTGCGAGCACTAAGCACAAAGAAGAAGAACATGACAGAGATGGCATCTTCATCTTCTTCTTCATCTGGGATTGAAACACAGAGGAGTATCGATACAATTAACCATTCGAGGCAAAGGTATTTGAGAAGCTACCCGTTAAGCGACGACAAGGAGAAGACAAACAACAAGGGCATTTGGAAGTTCTTCGGCTGCTTCACTTAA

Coding sequence (CDS)

ATGACGGATTCGAATGCGTCGAAAAGTGCAAAGCTTGCGAAGGAACAGAAATGGGCAGAAGAAGATGCAACATTTTTGCGAGCACTAAGCACAAAGAAGAAGAACATGACAGAGATGGCATCTTCATCTTCTTCTTCATCTGGGATTGAAACACAGAGGAGTATCGATACAATTAACCATTCGAGGCAAAGGTATTTGAGAAGCTACCCGTTAAGCGACGACAAGGAGAAGACAAACAACAAGGGCATTTGGAAGTTCTTCGGCTGCTTCACTTAA

Protein sequence

MTDSNASKSAKLAKEQKWAEEDATFLRALSTKKKNMTEMASSSSSSSGIETQRSIDTINHSRQRYLRSYPLSDDKEKTNNKGIWKFFGCFT
Homology
BLAST of Cp4.1LG16g00470 vs. NCBI nr
Match: XP_023006822.1 (uncharacterized protein LOC111499491 [Cucurbita maxima])

HSP 1 Score: 66.6 bits (161), Expect = 2.12e-10
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 9   SAKLAKEQKWAEEDATFLRALSTKKKNMTEMASSSSSSS---GIETQRSIDTINHSRQRY 68
           SAKL  + KWAE DATFL+ LS  K NMTE++SSSS  S   G ET R+ +   +SRQR+
Sbjct: 260 SAKLCNQNKWAEADATFLQRLSLNK-NMTEISSSSSHCSSLLGFETNRNNEIFKYSRQRF 319

Query: 69  LRSYPLSDDKEKTNNKG 82
           LRSY  S +++KT   G
Sbjct: 320 LRSYTFSVEEKKTKRFG 335

BLAST of Cp4.1LG16g00470 vs. NCBI nr
Match: KAG6605255.1 (hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 2.87e-10
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 9   SAKLAKEQKWAEEDATFLRALSTKKKNMTEMASSS---SSSSGIETQRSIDTINHSRQRY 68
           SAKL  + KWAE DATFL+ LS  K NMTE++S S   SS  G ET R+ +   +SRQR+
Sbjct: 30  SAKLCNQNKWAEADATFLQRLSLNK-NMTEISSYSLHCSSLLGFETNRNNEIFKYSRQRF 89

Query: 69  LRSYPLSDDKEKTNNKG 82
           LRSY  S +++KT   G
Sbjct: 90  LRSYTFSVEEKKTKRFG 105

BLAST of Cp4.1LG16g00470 vs. NCBI nr
Match: KGN62030.1 (hypothetical protein Csa_006081 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.03e-08
Identity = 38/81 (46.91%), Postives = 46/81 (56.79%), Query Frame = 0

Query: 13 AKEQKWAEEDATFLRALST--------KKKNMTEMASSSSSSSGIETQRSIDTINHSRQR 72
          +K+QKWAE DA FLR LS         KK    E    SSS  G E  RS D IN+SRQR
Sbjct: 15 SKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRSNDIINYSRQR 74

Query: 73 YLRSYPLSDDKEKTNNKGIWK 85
          YLRSY  +DD ++ +   + K
Sbjct: 75 YLRSYKFNDDHKEDDVDQVQK 95

BLAST of Cp4.1LG16g00470 vs. ExPASy TrEMBL
Match: A0A6J1KWW2 (uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.03e-10
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 9   SAKLAKEQKWAEEDATFLRALSTKKKNMTEMASSSSSSS---GIETQRSIDTINHSRQRY 68
           SAKL  + KWAE DATFL+ LS  K NMTE++SSSS  S   G ET R+ +   +SRQR+
Sbjct: 260 SAKLCNQNKWAEADATFLQRLSLNK-NMTEISSSSSHCSSLLGFETNRNNEIFKYSRQRF 319

Query: 69  LRSYPLSDDKEKTNNKG 82
           LRSY  S +++KT   G
Sbjct: 320 LRSYTFSVEEKKTKRFG 335

BLAST of Cp4.1LG16g00470 vs. ExPASy TrEMBL
Match: A0A0A0LJK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.99e-09
Identity = 38/81 (46.91%), Postives = 46/81 (56.79%), Query Frame = 0

Query: 13 AKEQKWAEEDATFLRALST--------KKKNMTEMASSSSSSSGIETQRSIDTINHSRQR 72
          +K+QKWAE DA FLR LS         KK    E    SSS  G E  RS D IN+SRQR
Sbjct: 15 SKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRSNDIINYSRQR 74

Query: 73 YLRSYPLSDDKEKTNNKGIWK 85
          YLRSY  +DD ++ +   + K
Sbjct: 75 YLRSYKFNDDHKEDDVDQVQK 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023006822.12.12e-1053.25uncharacterized protein LOC111499491 [Cucurbita maxima][more]
KAG6605255.12.87e-1051.95hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62030.11.03e-0846.91hypothetical protein Csa_006081 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1KWW21.03e-1053.25uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491... [more]
A0A0A0LJK14.99e-0946.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g00470.1Cp4.1LG16g00470.1mRNA