Cp4.1LG16g00120 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g00120
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	WRKY domain-containing protein
Location	Cp4.1LG16: 660602 .. 660817 (-)
RNA-Seq Expression	Cp4.1LG16g00120
Synteny	Cp4.1LG16g00120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTCTCCCCAATTCTCGACCCCGCTTCCTTCTTCGACTTCGATCTCTCCAATTTCCTCGTTGGCGACGACGACAGCTACGTTGACCAACTCGCCTCCTCCTCGTCGGAGAAGATCACCGGCATGGACAGTGGCGGTAGTAGTGTGGCAGTGGACAGCGGATCTAGCTTCGTGGTTTCATCGGAGCCGTCGCCATCCATGCAAGTGGTTTAA

mRNA sequence

ATGCAATTCTCCCCAATTCTCGACCCCGCTTCCTTCTTCGACTTCGATCTCTCCAATTTCCTCGTTGGCGACGACGACAGCTACGTTGACCAACTCGCCTCCTCCTCGTCGGAGAAGATCACCGGCATGGACAGTGGCGGTAGTAGTGTGGCAGTGGACAGCGGATCTAGCTTCGTGGTTTCATCGGAGCCGTCGCCATCCATGCAAGTGGTTTAA

Coding sequence (CDS)

ATGCAATTCTCCCCAATTCTCGACCCCGCTTCCTTCTTCGACTTCGATCTCTCCAATTTCCTCGTTGGCGACGACGACAGCTACGTTGACCAACTCGCCTCCTCCTCGTCGGAGAAGATCACCGGCATGGACAGTGGCGGTAGTAGTGTGGCAGTGGACAGCGGATCTAGCTTCGTGGTTTCATCGGAGCCGTCGCCATCCATGCAAGTGGTTTAA

Protein sequence

MQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVVSSEPSPSMQVV

Homology

[Close]

BLAST of Cp4.1LG16g00120 vs. NCBI nr
Match: KAG6571381.1 (hypothetical protein SDJN03_30296, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124 bits (312), Expect = 2.38e-35
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 2  QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVVS 61
          QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITG+DSGGSSVAVDSGSSFVVS
Sbjct: 19 QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGVDSGGSSVAVDSGSSFVVS 78

Query: 62 SEPSPSMQV 70
          SEPSPSMQV
Sbjct: 79 SEPSPSMQV 87

[Close]

BLAST of Cp4.1LG16g00120 vs. NCBI nr
Match: XP_023512174.1 (probable WRKY transcription factor 51 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123 bits (309), Expect = 1.29e-33
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVV 60
          MQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVV
Sbjct: 18 MQFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVV 77

Query: 61 SSEPSPSMQ 69
          SSEPSPS++
Sbjct: 78 SSEPSPSIR 86

[Close]

BLAST of Cp4.1LG16g00120 vs. NCBI nr
Match: XP_022927982.1 (probable WRKY transcription factor 51 [Cucurbita moschata])

HSP 1 Score: 120 bits (300), Expect = 2.96e-32
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2  QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVVS 61
          QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITG+DSGGSSVAVDSGSSFVVS
Sbjct: 19 QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGVDSGGSSVAVDSGSSFVVS 78

Query: 62 SEPSPSMQ 69
          SEPSPS++
Sbjct: 79 SEPSPSIR 86

[Close]

BLAST of Cp4.1LG16g00120 vs. NCBI nr
Match: XP_022971732.1 (probable WRKY transcription factor 51 [Cucurbita maxima])

HSP 1 Score: 117 bits (294), Expect = 2.39e-31
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 2  QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVVS 61
          QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKI G+DSGGSSVAVDSGSSFVVS
Sbjct: 19 QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKIIGVDSGGSSVAVDSGSSFVVS 78

Query: 62 SEPSPSMQ 69
          SEPSPS++
Sbjct: 79 SEPSPSIR 86

[Close]

BLAST of Cp4.1LG16g00120 vs. NCBI nr
Match: KAG7011149.1 (putative WRKY transcription factor 51, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114 bits (285), Expect = 4.09e-30
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 2  QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVVS 61
          QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITG+DSGGSSVAVDSGSSFVVS
Sbjct: 19 QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGVDSGGSSVAVDSGSSFVVS 78

Query: 62 SEP 64
          SEP
Sbjct: 79 SEP 81

[Close]

BLAST of Cp4.1LG16g00120 vs. ExPASy TrEMBL
Match: A0A6J1EIN3 (probable WRKY transcription factor 51 OS=Cucurbita moschata OX=3662 GN=LOC111434887 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 1.43e-32
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 2  QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVVS 61
          QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITG+DSGGSSVAVDSGSSFVVS
Sbjct: 19 QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGVDSGGSSVAVDSGSSFVVS 78

Query: 62 SEPSPSMQ 69
          SEPSPS++
Sbjct: 79 SEPSPSIR 86

[Close]

BLAST of Cp4.1LG16g00120 vs. ExPASy TrEMBL
Match: A0A6J1I2S4 (probable WRKY transcription factor 51 OS=Cucurbita maxima OX=3661 GN=LOC111470401 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 1.16e-31
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 2  QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKITGMDSGGSSVAVDSGSSFVVS 61
          QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKI G+DSGGSSVAVDSGSSFVVS
Sbjct: 19 QFSPILDPASFFDFDLSNFLVGDDDSYVDQLASSSSEKIIGVDSGGSSVAVDSGSSFVVS 78

Query: 62 SEPSPSMQ 69
          SEPSPS++
Sbjct: 79 SEPSPSIR 86

[Close]

BLAST of Cp4.1LG16g00120 vs. ExPASy TrEMBL
Match: A0A0A0LM41 (WRKY domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G297180 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.73e-11
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 2  QFSPILDPASFFDFDLSNFLV-GDDDSYV-DQLASSS-----SEKIT--GMDSGGSSVAV 61
           F PILDPASFFDF+LS+FL+ GDD++ V DQ+ASSS     SEKIT  G+DSGGSS  +
Sbjct: 22 HFPPILDPASFFDFELSDFLLFGDDNNIVVDQVASSSPSMTSSEKITSGGVDSGGSSTVI 81

[Close]

BLAST of Cp4.1LG16g00120 vs. ExPASy TrEMBL
Match: A0A6J1E1D1 (probable WRKY transcription factor 51 OS=Momordica charantia OX=3673 GN=LOC111025535 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.41e-10
Identity = 43/74 (58.11%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 2  QFSPILDPASFFDFDLSNFLVGDDDSYV--DQLASSS-----SEKITGMDSGGSSVAVDS 61
           F PILDP+ FFDFDLS++L+ +DD+    DQ ASSS     SEKITG+DSG S   VDS
Sbjct: 19 HFPPILDPSVFFDFDLSDYLMLNDDNINIDDQAASSSPSIASSEKITGVDSGNSCAVVDS 78

Query: 62 GSSFVVSSEPSPSM 68
          GSS V SS  + SM
Sbjct: 79 GSSTVASSGATSSM 92

[Close]

BLAST of Cp4.1LG16g00120 vs. ExPASy TrEMBL
Match: A0A6J1DV80 (probable WRKY transcription factor 51 OS=Momordica charantia OX=3673 GN=LOC111024371 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.05e-10
Identity = 43/74 (58.11%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 2  QFSPILDPASFFDFDLSNFLVGDDDSYV--DQLASSS-----SEKITGMDSGGSSVAVDS 61
           F PILDP+ FFDFDLS++L+ +DD+    DQ ASSS     SEKITG+DSG S   VDS
Sbjct: 19 HFPPILDPSVFFDFDLSDYLMLNDDNINIDDQAASSSPSIASSEKITGVDSGNSCAVVDS 78

Query: 62 GSSFVVSSEPSPSM 68
          GSS V SS  + SM
Sbjct: 79 GSSTVASSGATSSM 92

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g00120 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g00120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571381.1	2.38e-35	98.55	hypothetical protein SDJN03_30296, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023512174.1	1.29e-33	97.10	probable WRKY transcription factor 51 [Cucurbita pepo subsp. pepo]	[more]
XP_022927982.1	2.96e-32	95.59	probable WRKY transcription factor 51 [Cucurbita moschata]	[more]
XP_022971732.1	2.39e-31	94.12	probable WRKY transcription factor 51 [Cucurbita maxima]	[more]
KAG7011149.1	4.09e-30	98.41	putative WRKY transcription factor 51, partial [Cucurbita argyrosperma subsp. ar...	[more]

BLAST of Cp4.1LG16g00120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIN3	1.43e-32	95.59	probable WRKY transcription factor 51 OS=Cucurbita moschata OX=3662 GN=LOC111434...	[more]
A0A6J1I2S4	1.16e-31	94.12	probable WRKY transcription factor 51 OS=Cucurbita maxima OX=3661 GN=LOC11147040...	[more]
A0A0A0LM41	1.73e-11	65.71	WRKY domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G297180 PE=4 S...	[more]
A0A6J1E1D1	2.41e-10	58.11	probable WRKY transcription factor 51 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1DV80	6.05e-10	58.11	probable WRKY transcription factor 51 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]

BLAST of Cp4.1LG16g00120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g00120.1	Cp4.1LG16g00120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding