Cp4.1LG15g07760 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAAAATTTCCCTTCTTTGCCTCATTTTGGCCCAGATCTTGCTGATTCAAGCAATGGCTTCGACTGCCACAACCACGACTCGCCATGTGTCGGCGGCCCCGGAGCCATCGGAGACCGACAACATAGAAGGACCTGGACTGGCGGAGGCGCCGGAGATCCGACGCCTGGGAAAACACCACGGCGATAAGTCCGTGGCCGGCGGGGGTGTCATCATTGGCAGCCTTGTTACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCATTGA ATGGCCAAAATTTCCCTTCTTTGCCTCATTTTGGCCCAGATCTTGCTGATTCAAGCAATGGCTTCGACTGCCACAACCACGACTCGCCATGTGTCGGCGGCCCCGGAGCCATCGGAGACCGACAACATAGAAGGACCTGGACTGGCGGAGGCGCCGGAGATCCGACGCCTGGGAAAACACCACGGCGATAAGTCCGTGGCCGGCGGGGGTGTCATCATTGGCAGCCTTGTTACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCATTGA ATGGCCAAAATTTCCCTTCTTTGCCTCATTTTGGCCCAGATCTTGCTGATTCAAGCAATGGCTTCGACTGCCACAACCACGACTCGCCATGTGTCGGCGGCCCCGGAGCCATCGGAGACCGACAACATAGAAGGACCTGGACTGGCGGAGGCGCCGGAGATCCGACGCCTGGGAAAACACCACGGCGATAAGTCCGTGGCCGGCGGGGGTGTCATCATTGGCAGCCTTGTTACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCATTGA MAKISLLCLILAQILLIQAMASTATTTTRHVSAAPEPSETDNIEGPGLAEAPEIRRLGKHHGDKSVAGGGVIIGSLVTAVFAAVFCYIRVTRKRDGVDSVH Homology
BLAST of Cp4.1LG15g07760 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 184 bits (467), Expect = 2.78e-58 Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0
BLAST of Cp4.1LG15g07760 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 180 bits (457), Expect = 9.33e-57 Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0
BLAST of Cp4.1LG15g07760 vs. NCBI nr
Match: KAA0031619.1 (hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK07071.1 hypothetical protein E5676_scaffold13G003890 [Cucumis melo var. makuwa]) HSP 1 Score: 147 bits (371), Expect = 1.25e-43 Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 0
BLAST of Cp4.1LG15g07760 vs. NCBI nr
Match: KAE8645753.1 (hypothetical protein Csa_020263 [Cucumis sativus]) HSP 1 Score: 110 bits (274), Expect = 1.29e-28 Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 0
BLAST of Cp4.1LG15g07760 vs. NCBI nr
Match: KAF7805845.1 (Actin cytoskeleton-regulatory complex protein [Senna tora]) HSP 1 Score: 100 bits (248), Expect = 5.03e-25 Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 0
BLAST of Cp4.1LG15g07760 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1) HSP 1 Score: 147 bits (371), Expect = 6.06e-44 Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 0
BLAST of Cp4.1LG15g07760 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1) HSP 1 Score: 135 bits (340), Expect = 3.31e-39 Identity = 78/103 (75.73%), Postives = 84/103 (81.55%), Query Frame = 0
BLAST of Cp4.1LG15g07760 vs. ExPASy TrEMBL
Match: A0A5N5GJH8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_035756 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.79e-24 Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 0
BLAST of Cp4.1LG15g07760 vs. ExPASy TrEMBL
Match: A0A2R6QCD3 (Actin cytoskeleton-regulatory complex protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19050 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.30e-23 Identity = 59/105 (56.19%), Postives = 71/105 (67.62%), Query Frame = 0
BLAST of Cp4.1LG15g07760 vs. ExPASy TrEMBL
Match: A0A2N9IXN3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.72e-23 Identity = 60/120 (50.00%), Postives = 72/120 (60.00%), Query Frame = 0
BLAST of Cp4.1LG15g07760 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 54.7 bits (130), Expect = 5.1e-08 Identity = 39/95 (41.05%), Postives = 50/95 (52.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|