Cp4.1LG15g07760 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g07760
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionActin cytoskeleton-regulatory complex protein
LocationCp4.1LG15: 7882368 .. 7882673 (+)
RNA-Seq ExpressionCp4.1LG15g07760
SyntenyCp4.1LG15g07760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAATTTCCCTTCTTTGCCTCATTTTGGCCCAGATCTTGCTGATTCAAGCAATGGCTTCGACTGCCACAACCACGACTCGCCATGTGTCGGCGGCCCCGGAGCCATCGGAGACCGACAACATAGAAGGACCTGGACTGGCGGAGGCGCCGGAGATCCGACGCCTGGGAAAACACCACGGCGATAAGTCCGTGGCCGGCGGGGGTGTCATCATTGGCAGCCTTGTTACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCATTGA

mRNA sequence

ATGGCCAAAATTTCCCTTCTTTGCCTCATTTTGGCCCAGATCTTGCTGATTCAAGCAATGGCTTCGACTGCCACAACCACGACTCGCCATGTGTCGGCGGCCCCGGAGCCATCGGAGACCGACAACATAGAAGGACCTGGACTGGCGGAGGCGCCGGAGATCCGACGCCTGGGAAAACACCACGGCGATAAGTCCGTGGCCGGCGGGGGTGTCATCATTGGCAGCCTTGTTACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCATTGA

Coding sequence (CDS)

ATGGCCAAAATTTCCCTTCTTTGCCTCATTTTGGCCCAGATCTTGCTGATTCAAGCAATGGCTTCGACTGCCACAACCACGACTCGCCATGTGTCGGCGGCCCCGGAGCCATCGGAGACCGACAACATAGAAGGACCTGGACTGGCGGAGGCGCCGGAGATCCGACGCCTGGGAAAACACCACGGCGATAAGTCCGTGGCCGGCGGGGGTGTCATCATTGGCAGCCTTGTTACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCATTGA

Protein sequence

MAKISLLCLILAQILLIQAMASTATTTTRHVSAAPEPSETDNIEGPGLAEAPEIRRLGKHHGDKSVAGGGVIIGSLVTAVFAAVFCYIRVTRKRDGVDSVH
Homology
BLAST of Cp4.1LG15g07760 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184 bits (467), Expect = 2.78e-58
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0

Query: 1   MAKISLLCLILAQILLIQAMASTATTTTRHVSAAPEPSETDNIEGPGLAEAPEIRRLGKH 60
           MAKISLLCLILAQILLIQAMASTATTTT HVSAAPEPSETDN+EGPGLAEAPEIRRLGKH
Sbjct: 1   MAKISLLCLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGKH 60

Query: 61  HGDKSVAGGGVIIGSLVTAVFAAVFCYIRVTRKRDGVDSVH 101
           H DKSVAGGGVIIG LVTAVFAAVFCYIRVTRKRDGVDSVH
Sbjct: 61  HVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 101

BLAST of Cp4.1LG15g07760 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (457), Expect = 9.33e-57
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0

Query: 1   MAKISLLCLILAQILLIQAMASTATTTTRHVSAAPEPSETDNIEGPGLAEAPEIRRLGKH 60
           MAKISLL LILAQILLIQAMASTATTTT HVSAAPEPSETDN+EGPGLAEAPEIRRLGKH
Sbjct: 1   MAKISLLSLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGKH 60

Query: 61  HGDKSVAGGGVIIGSLVTAVFAAVFCYIRVTRKRDGVDSVH 101
           H DKSVAGGGVIIG LVTAVFAAVFCYIRVTRKRDGVDSVH
Sbjct: 61  HVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 101

BLAST of Cp4.1LG15g07760 vs. NCBI nr
Match: KAA0031619.1 (hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK07071.1 hypothetical protein E5676_scaffold13G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 1.25e-43
Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 0

Query: 1   MAKISLL-CLILAQILLIQAMASTATTTTRHVSAAPEPSETDNIEGPGLAEAPEIRRLGK 60
           MAK  LL CLI+A+ILLIQAM S ATTT   +SAAPEP+E    EG  +AEAPEIRRLGK
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGSLVTAVFAAVFCYIRVTRKRDGVDSVH 101
           HHGDKSVAGGGVIIG LVTA+FAAVFCYIRVTRKRDGVDSVH
Sbjct: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVH 102

BLAST of Cp4.1LG15g07760 vs. NCBI nr
Match: KAE8645753.1 (hypothetical protein Csa_020263 [Cucumis sativus])

HSP 1 Score: 110 bits (274), Expect = 1.29e-28
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 0

Query: 1  MAKISLL-CLILAQILLIQAMA-STATTTTRHVSAAPEPSETDNIEGPGLAEAPEIRRLG 60
          MAKI LL CLI+ +I LIQA+  S ATTT   +S APE SE    EG  +AEAPEIRRLG
Sbjct: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61 KHHGDKSVAGGGVIIGSLVTAVFAAVFCYIR 89
          KHHGDKS+AGGGVIIG LVTAVFAAVFCYIR
Sbjct: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

BLAST of Cp4.1LG15g07760 vs. NCBI nr
Match: KAF7805845.1 (Actin cytoskeleton-regulatory complex protein [Senna tora])

HSP 1 Score: 100 bits (248), Expect = 5.03e-25
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 9  LILAQILLIQAMASTATTTTRHVSAAPEPSETDNIEGPGLAEAPEIRRLGKHHG-DKSVA 68
          L+L QIL+++AMA T T    H   A +P  +  + G G+AEAPEIRRLGKHH  DKSVA
Sbjct: 4  LLLVQILVLEAMAHTDTGDEAH-KIADQPVSSSKV-GVGVAEAPEIRRLGKHHSNDKSVA 63

Query: 69 GGGVIIGSLVTAVFAAVFCYIRVTRKRDG 96
          GGGVIIG LVTA+FAAVFCYIRVTRKR  
Sbjct: 64 GGGVIIGGLVTAIFAAVFCYIRVTRKRGA 90

BLAST of Cp4.1LG15g07760 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 6.06e-44
Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 0

Query: 1   MAKISLL-CLILAQILLIQAMASTATTTTRHVSAAPEPSETDNIEGPGLAEAPEIRRLGK 60
           MAK  LL CLI+A+ILLIQAM S ATTT   +SAAPEP+E    EG  +AEAPEIRRLGK
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGK 60

Query: 61  HHGDKSVAGGGVIIGSLVTAVFAAVFCYIRVTRKRDGVDSVH 101
           HHGDKSVAGGGVIIG LVTA+FAAVFCYIRVTRKRDGVDSVH
Sbjct: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVH 102

BLAST of Cp4.1LG15g07760 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 3.31e-39
Identity = 78/103 (75.73%), Postives = 84/103 (81.55%), Query Frame = 0

Query: 1   MAKISLL-CLILAQILLIQAMA-STATTTTRHVSAAPEPSETDNIEGPGLAEAPEIRRLG 60
           MAKI LL CLI+ +I LIQA+  S ATTT   +S APE SE    EG  +AEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDKSVAGGGVIIGSLVTAVFAAVFCYIRVTRKRDGVDSVH 101
           KHHGDKS+AGGGVIIG LVTAVFAAVFCYIRVTRKRDGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

BLAST of Cp4.1LG15g07760 vs. ExPASy TrEMBL
Match: A0A5N5GJH8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_035756 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.79e-24
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 0

Query: 1   MAKISLLCLILAQILLIQAMASTATTTTRHVSAAPEPS-ETDNIEGPGLAEAPEIRRLG- 60
           MA++ L+CL+LA  LL+ A+A+  + T    S A EPS +++++E   +AEAP +RRLG 
Sbjct: 1   MARLGLICLVLAGFLLVSAIATDKSDTDHSASIAAEPSSDSESMEEGVVAEAPSLRRLGP 60

Query: 61  ----KHHGDKSVAGGGVIIGSLVTAVFAAVFCYIRVTRKRDGVD 98
               +   DKSVAGGG+IIG LVT +FAAVFCYIRVTRKR GV 
Sbjct: 61  AEKSEKKADKSVAGGGIIIGGLVTTIFAAVFCYIRVTRKRGGVQ 104

BLAST of Cp4.1LG15g07760 vs. ExPASy TrEMBL
Match: A0A2R6QCD3 (Actin cytoskeleton-regulatory complex protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19050 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.30e-23
Identity = 59/105 (56.19%), Postives = 71/105 (67.62%), Query Frame = 0

Query: 1   MAKISLLCLILAQILLIQAMA--STATTTTRHVSAAPEPSETDNIE-------GPGLAEA 60
           M++  L CL+LA ILL+QAMA  S         + A  P+ T ++E       G  +AEA
Sbjct: 1   MSRFLLTCLVLAHILLVQAMAIRSDPRKILESHTIADPPASTGSVESASDGETGSSVAEA 60

Query: 61  PEIRRLGKHHG-DKSVAGGGVIIGSLVTAVFAAVFCYIRVTRKRD 95
           PEI RLGKHH  DKSVAGGGVIIG L TA+FAAV+CYIRVTR+RD
Sbjct: 61  PEIGRLGKHHSSDKSVAGGGVIIGGLATAIFAAVYCYIRVTRRRD 105

BLAST of Cp4.1LG15g07760 vs. ExPASy TrEMBL
Match: A0A2N9IXN3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.72e-23
Identity = 60/120 (50.00%), Postives = 72/120 (60.00%), Query Frame = 0

Query: 1   MAKISLLCLILAQILLIQAMAS-----------------------TATTTTRHVSAAPEP 60
           M ++ L CLILA+IL++QAMA                         A    + VS+  E 
Sbjct: 1   MGRLGLFCLILAEILVVQAMAEKSEGSELNPFGLKAQNKNGALGVVARVADQPVSSIAES 60

Query: 61  SETDNIEGPGLAEAPEIRRLGKHHGDKSVAGGGVIIGSLVTAVFAAVFCYIRVTRKRDGV 97
            E+   E   +AEAP IRR+GKHH DKS+AGGGVIIG L TA+FA VFCYIRVTRKRDGV
Sbjct: 61  PESK--EYSDVAEAPVIRRMGKHHSDKSLAGGGVIIGGLATAIFAVVFCYIRVTRKRDGV 118

BLAST of Cp4.1LG15g07760 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-08
Identity = 39/95 (41.05%), Postives = 50/95 (52.63%), Query Frame = 0

Query: 2  AKISLLCLILAQILLIQAMASTA-TTTTRHVSAAPEPSETDNIEGPGLAEAPEIRRLGKH 61
          AK  +LC +L  +  + A +S A    TR +     P E    E P ++   E  R G H
Sbjct: 3  AKHIVLCFLLTYVFSMAAASSEAEPPATRKLGRHEWPGE--EAEAPEVSHLEETVRRGHH 62

Query: 62 HG--DKSVAGGGVIIGSLVTAVFAAVFCYIRVTRK 94
          H   ++SVAGGGVI+G L T     VFCYIR TRK
Sbjct: 63 HSTVERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6572323.12.78e-5896.04hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011935.19.33e-5795.05hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0031619.11.25e-4379.41hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK070... [more]
KAE8645753.11.29e-2872.53hypothetical protein Csa_020263 [Cucumis sativus][more]
KAF7805845.15.03e-2565.17Actin cytoskeleton-regulatory complex protein [Senna tora][more]
Match NameE-valueIdentityDescription
A0A5D3C5906.06e-4479.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K3N03.31e-3975.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1[more]
A0A5N5GJH82.79e-2453.85Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
A0A2R6QCD31.30e-2356.19Actin cytoskeleton-regulatory complex protein OS=Actinidia chinensis var. chinen... [more]
A0A2N9IXN31.72e-2350.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G09280.15.1e-0841.05unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34558:SF4EXPRESSED PROTEINcoord: 1..99
NoneNo IPR availablePANTHERPTHR34558EXPRESSED PROTEINcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g07760.1Cp4.1LG15g07760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane