Cp4.1LG15g06730 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g06730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RRP15-like protein
Location	Cp4.1LG15: 7353477 .. 7357198 (-)
RNA-Seq Expression	Cp4.1LG15g06730
Synteny	Cp4.1LG15g06730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGCTCACCGTCCATTACTGCACCCTACTCCGTCGACGAACTCCGCACGATGTTTCTGTTCGACGCCGTATCAGCAGCTGCCGCAGCATTCCGACGAAATCGTCGTTGCCTACTCCGTCTCACACTCTCTTGCCGCTTCGAGCAATCAGAGTTAATTATATCTGTTTTTCTTATTCTTAGAAACACAGTGGTTCAGCCCCTTACCGGCGCCGCCGCTGCGCATTTTCAGATCCCCAAGGTTTTATTTATTTTTATATGTTGCTACGTTGGGCTATGTTGGTATGTTCTCTTCACCGACGGAGAAGAAAGCTAAGAACGAATATGTTGCAAATTAGAGGAAAATAAAAACAGATTGAATCCGAAGGAACATAAAAACATATCATTCTTATCCGAATTATTAGATAAAAAGGATAAAATGTGTAAGAACATGAACATAGCAAAGGAGAAACTCACGTATAGTTTGGGTTTCTAAAAAAAATGATTGAAATTATTGTTATCAATAAAAAAACCAATAATGGACAAACAAAATAGAAAGTTAACATTGAGTTCGAGTGTGATTGAATGTCATTGAGTCTTCTTGAGTATACCAGAAACTATAGATGCATATGAACTGGCATAGGGTAGCTTTTGTTGCTCAATTCATGTAATTTTTTTTTTAAACTATTTTTTAAACCGTTGATTTCATTTTTTTTTTTGGAATCCAGATACACTGATTTTAAAATCCATCAAAATTCAGGGGTTCTAAACAGGGGTTAAGATTGTTGAAACATTTGTTTGGGATAAGCTGTGCATTTGAATCGGTATCATGGTTGATGACTGGAATGCAGTAGAATTGGTGGGAGGTGCGAAGAGAAGGAAAAAGATGGGTTCCAGGAACAAGAAAAGACCAAGGATGATGGGTGGAAGTGGGAACAAAGTTAAGGTTGATAGGAAGATGAAGAAACTCTTCCAAAAGCGGGCGTGAGTATAATTTAGATGATGACGATGATGACGAGAAAGCTCCGGTGATTGGAGACGAGACCAAAACTTCAATGCTCAGTCATGAGGAGGTTGGAGATGAAGAGTTTTCTGAGGGTGAAGAGGAAGGGAAGGATGTCAATGCAGGTGTCTAGCTATCCGAAGACGATGAAAATGGTGACATTCAACCAGGTATAACTAAGTTTACAGAAGGTTGTTTATATCTTAAATGGGTAGGAATTATTTTCAATAGTTGAAGTAATAAGAAAAGTAATTGTGCCATGTTTGTGTTGCAGGGTCCTATATTATCAGCAAACAAGAAGCTTGCTGCTGAAAAGCTTGCAGAAGAGGAGGCTGAGAGGAAAGTTAAAGGAGAGGCCAAGAAAGAGAAACAAAGGGTATTTCCTTTTAAATAAAAGATTTTGCTTGTTTATAATTTAGCTTTTGCTTAGAATTTGTTGATTGCAAACGTGGGATCTCACAATCCACCCCCCTTCAGGGTCCAGCGTCCTTGCTGGCCTTCGTTCCCTTCTTCAATTGATGTGGGACCCCCCAATCCACCTCCTTCGGGGCCAGCATCTTTGCTGGTACACCGTCTTGTGTCCACCCCCTTTTGGGTTCAACCTTCTCGTTGGCACATTGCTCGGTGTCTAACTCTGATACCATTTGTAACGGCCCAAGCCTGCCGCTAATAGATATTGTCCTCTTTGGGCTTTCTCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAGATTTCCACACTCTTGTAAAGAATGCTTCGTTTTCTTCTCCAATCAGGATCTCACAGCAAATATTTGAATATGTGAATATGGTAGGTGGGAGAAAAAGGCCATGTGAAACCTGCTACTTACTTGGATTCTAATGAAAAGTTTCTTATTGGCGTTGCTACTAAAGGAGGTAGCCTAGTTCGATTTTACTTTGAGTTGGGAAAGGTTTTCTTTTTTATTTCAACGGTGATTATTACATCTCTCATCATACTAACACAGTAATCTCCATGTGTATTGCTGCTTGTCGTGTCAGTTGTCAAGTTGTTTAACGCTGTAAGTAGCCAAATTTTGATATCAGACAACTTTTTTGTCACATCCTCATCTATGTTGCATTCATCGCTGAATTCCATTATTTTGAATATGATACAGGTCAATAAGGCACAACATGCTCAGAAAGGTTTGAATCCTTCGAGAGCTAAAGATGTTAAAGGTATTAGGCCTTTTACGTAACTTTGATCTCAGAAGTTAACAATTTCACTTTCTGTTATCTTGCCTTGTGAATATGCTGTCCCTAAATTAGCATTCAATTAATTTTGGTGCTTCTGCATGTTGCATTATATTCAATTTTGTAGCTTAACTTTCCTATTCCTATGATGTATGCCACCTTATATTCTGCTTTGTCCTTGTTGAAAACCATGTTGTTTAGTCTGACTACATGTTATGTGATAGCCCAAGCCCACCGTTAGCAGATATTGTCTTCTTTGGACTTTCCTTTTCGAGCTTCCTCTCAAGGTTTTAAAACATGTTTGGTAGGGAGAGGTTTCCACGTTCTTATAAGGAATGTTCGTTTCCCTCTGCAACCGATGCGGGATCTCACGTTTTAAACTCCTAATTAACGAATCATTGGAAACTTTACTAATTTGCTGACTTTGATAGGGAATCTGTGTGGTTGAAGTAGCCAGTGATTTAAAAGGCATGTGCCTCAAATTTATTGACCTATTAGTCTCTCGCGCATACTTCTAGTCGACTAATGCTTTCCCCCGTGGCTTATATAGGACTACTAATGTTTAGCGACCCCTGTTAGACCCGCTTTTGTTTGCATATTAAGACGCTTATTCTTCCGTTCTTGACTTGTGATTATGTGAGTAGCTACTCAATATTGAAGGTGAACGATATCCTAACTTTTTCGTTCTATCCCATCTCATACGGAGTACTTTATTTGTTTTATACTGCCAGCAATAAATAAACGCAGGAAGGAAGCTTTCTTTTCTGAGTTGGGCAAGACAATTTTGTCAGCAACAAACAGTAATGCAAAGGTTGGTTATTTTCTGCTATAGAATTTGATAAATCTATTGCAGCTTTTAACCAATTGTTGGTAAATTCTTTATTAATTCTCTTACGAGCAATGATACTTTCGACAAACACCTGAGGAGGCGTACCGACTTGTGGCTTTTTTCATTAGCATCCTCATCTTCATTATCGTGTTTATGTGCAGTGGAATGGGGACTGGTAGGGGGATGTCCATGGGGTCGGGCAGGGGTCGGGATGGTTTTCATGTCCTCACGAAATTTCCTATAAAATTTTATGAAAAAAGGTTGGGATGGGGAATGGGGACTAGTCCGTGCAGGGGCGGGGAAAATGGACAGCTCTAGGGGATGGGGTGCATGTTAGTTAAGAGAGTGAAGCTCAGGTCAAGTCACGATCATATATTATCTGTTTCTTCATGTCCATAATGAAACTCAAATGGCCATCTTTATGTTGAACAGTTAAGACACATCAGGTGGTGCAGTGGACGCCGAAGGACCCGCTTGGGCTCCATTGCGTGATAATTATATGCTGACCAATTCCAAGTTAAAAGATTGGGATAAGATGCCAGTAAGATAAGATTTACTTTCAAAGCCTAATGTCTGTCGTGCCTGTTTCTGTCGGTTTCGATTTTCATATCGTCGTGATTAATTATACTTCAATGATGGCCGAGGACAATGGGAGGATGTTAGAAGACAGTAGCTCAGATGAGGATTGA

mRNA sequence

ACGCTCACCGTCCATTACTGCACCCTACTCCGTCGACGAACTCCGCACGATGTTTCTGTTCGACGCCGTATCAGCAGCTGCCGCAGCATTCCGACGAAATCGTCGTTGCCTACTCCGTCTCACACTCTCTTGCCGCTTCGAGCAATCAGAGTTAATTATATCTGTTTTTCTTATTCTTAGAAACACAGTGGTTCAGCCCCTTACCGGCGCCGCCGCTGCGCATTTTCAGATCCCCAAGGGGTTCTAAACAGGGGTTAAGATTGTTGAAACATTTGTTTGGGATAAGCTGTGCATTTGAATCGGTATCATGGTTGATGACTGGAATGCAGTAGAATTGGTGGGAGGTGCGAAGAGAAGGAAAAAGATGGGTTCCAGGAACAAGAAAAGACCAAGGATGATGGGTGGAAGTGGGAACAAAGTTAAGGTTGATAGGAAGATGAAGAAACTCTTCCAAAAGCGGGCGTGAGTATAATTTAGATGATGACGATGATGACGAGAAAGCTCCGGTGATTGGAGACGAGACCAAAACTTCAATGCTCAGTCATGAGGAGGTTGGAGATGAAGAGTTTTCTGAGGGTGAAGAGGAAGGGAAGGATGTCAATGCAGGTGTCTAGCTATCCGAAGACGATGAAAATGGTGACATTCAACCAGGGTCCTATATTATCAGCAAACAAGAAGCTTGCTGCTGAAAAGCTTGCAGAAGAGGAGGCTGAGAGGAAAGTTAAAGGAGAGGCCAAGAAAGAGAAACAAAGGTTTCTTATTGGCGTTGCTACTAAAGGAGTTGTCAAGTTGTTTAACGCTGTCAATAAGGCACAACATGCTCAGAAAGGTTTGAATCCTTCGAGAGCTAAAGATGTTAAAGCAATAAATAAACGCAGGAAGGAAGCTTTCTTTTCTGAGTTGGGCAAGACAATTTTGTCAGCAACAAACAGTAATGCAAAGGTTGTGGAATGGGGACTGGTAGGGGGATGTCCATGGGGTCGGGCAGGGGTCGGGATGGTTTTCATCCTAATGTCTGTCGTGCCTGTTTCTGTCGGTTTCGATTTTCATATCGTCGTGATTAATTATACTTCAATGATGGCCGAGGACAATGGGAGGATGTTAGAAGACAGTAGCTCAGATGAGGATTGA

Coding sequence (CDS)

ATGAGGAGGTTGGAGATGAAGAGTTTTCTGAGGGTGAAGAGGAAGGGAAGGATGTCAATGCAGGTGTCTAGCTATCCGAAGACGATGAAAATGGTGACATTCAACCAGGGTCCTATATTATCAGCAAACAAGAAGCTTGCTGCTGAAAAGCTTGCAGAAGAGGAGGCTGAGAGGAAAGTTAAAGGAGAGGCCAAGAAAGAGAAACAAAGGTTTCTTATTGGCGTTGCTACTAAAGGAGTTGTCAAGTTGTTTAACGCTGTCAATAAGGCACAACATGCTCAGAAAGGTTTGAATCCTTCGAGAGCTAAAGATGTTAAAGCAATAAATAAACGCAGGAAGGAAGCTTTCTTTTCTGAGTTGGGCAAGACAATTTTGTCAGCAACAAACAGTAATGCAAAGGTTGTGGAATGGGGACTGGTAGGGGGATGTCCATGGGGTCGGGCAGGGGTCGGGATGGTTTTCATCCTAATGTCTGTCGTGCCTGTTTCTGTCGGTTTCGATTTTCATATCGTCGTGATTAATTATACTTCAATGATGGCCGAGGACAATGGGAGGATGTTAGAAGACAGTAGCTCAGATGAGGATTGA

Protein sequence

MRRLEMKSFLRVKRKGRMSMQVSSYPKTMKMVTFNQGPILSANKKLAAEKLAEEEAERKVKGEAKKEKQRFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKVVEWGLVGGCPWGRAGVGMVFILMSVVPVSVGFDFHIVVINYTSMMAEDNGRMLEDSSSDED

Homology

[Close]

BLAST of Cp4.1LG15g06730 vs. NCBI nr
Match: XP_038888922.1 (RRP15-like protein [Benincasa hispida] >XP_038888940.1 RRP15-like protein [Benincasa hispida])

HSP 1 Score: 165 bits (418), Expect = 1.83e-46
Identity = 115/180 (63.89%), Postives = 124/180 (68.89%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEKQ------------------RFLIGVATK 96
           GPILSANKKL  EKLAEEEAERKVKG AKKEKQ                  +FLIGVATK
Sbjct: 146 GPILSANKKLIVEKLAEEEAERKVKGLAKKEKQLVGEKGHVKPATYLDSHEKFLIGVATK 205

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKVVEWG 156
           GVVKLFNAVNKAQHAQKGLNPSR KD KAINKRRKEAFFSELGK  LSATNSNAK+   G
Sbjct: 206 GVVKLFNAVNKAQHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSG 265

Query: 157 LVG---GCPWGRAGVGMVFILMSVVPVSVGFDFHIVVINYTSMMAEDNGRMLEDSSSDED 195
                 G  W  A +   ++L +    S   D+  +  N T+M AEDNGRMLEDSSSDED
Sbjct: 266 GAADAEGPAW--APLRDNYMLTN----SKLKDWDKMPDNMTTM-AEDNGRMLEDSSSDED 318

[Close]

BLAST of Cp4.1LG15g06730 vs. NCBI nr
Match: XP_022928388.1 (RRP15-like protein [Cucurbita moschata])

HSP 1 Score: 161 bits (408), Expect = 5.60e-45
Identity = 114/180 (63.33%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEKQ------------------RFLIGVATK 96
           GPILSANKKL AEKLAEEEAERKVKGEAKKEKQ                  +FLIGVATK
Sbjct: 146 GPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLLAEKGHVKPATYLDSHEKFLIGVATK 205

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKVVEWG 156
           GVVKLFNAVNKAQHAQKGLNPSRAKD KAI+KRRKEAFFSELGK  LSATNSNAK    G
Sbjct: 206 GVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRKEAFFSELGKPTLSATNSNAKGNTSG 265

Query: 157 LVG---GCPWGRAGVGMVFILMSVVPVSVGFDFHIVVINYTSMMAEDNGRMLEDSSSDED 195
                 G  W  A +   ++L +    S   D+  +  N T   AEDNGRML DSSSD+D
Sbjct: 266 DAAEAEGPAW--APLRDNYMLTN----SKLKDWDKMPDNTTK--AEDNGRMLGDSSSDDD 317

[Close]

BLAST of Cp4.1LG15g06730 vs. NCBI nr
Match: KAG6589088.1 (RRP15-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161 bits (408), Expect = 5.60e-45
Identity = 114/180 (63.33%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEKQ------------------RFLIGVATK 96
           GPILSANKKL AEKLAEEEAERKVKGEAKKEKQ                  +FLIGVATK
Sbjct: 146 GPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLLAEKGHVKPATYLDSHEKFLIGVATK 205

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKVVEWG 156
           GVVKLFNAVNKAQHAQKGLNPSRAKD KAI+KRRKEAFFSELGK  LSATNSNAK    G
Sbjct: 206 GVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRKEAFFSELGKPTLSATNSNAKGNTSG 265

Query: 157 LVG---GCPWGRAGVGMVFILMSVVPVSVGFDFHIVVINYTSMMAEDNGRMLEDSSSDED 195
                 G  W  A +   ++L +    S   D+  +  N T   AEDNGRML DSSSD+D
Sbjct: 266 DAAEAEGPAW--APLRDNYMLTN----SKLKDWDKMPDNTTK--AEDNGRMLGDSSSDDD 317

[Close]

BLAST of Cp4.1LG15g06730 vs. NCBI nr
Match: XP_008462030.1 (PREDICTED: RRP15-like protein [Cucumis melo])

HSP 1 Score: 160 bits (406), Expect = 1.17e-44
Identity = 112/180 (62.22%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEKQ------------------RFLIGVATK 96
           GPILSANKKL AEKLAEEEAERKVKGEA+K KQ                  +FLIGVATK
Sbjct: 147 GPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATK 206

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKVVEWG 156
           GVVKLFNAVNKAQHAQKGLNPSR KD KAINKRRKEAFFSELGK  LSATNSNAK+   G
Sbjct: 207 GVVKLFNAVNKAQHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSG 266

Query: 157 LVG---GCPWGRAGVGMVFILMSVVPVSVGFDFHIVVINYTSMMAEDNGRMLEDSSSDED 195
                 G  W  A +   ++L +    S   D+  +  N  +  AEDNGR+LEDSSSDED
Sbjct: 267 GAADAEGPAW--APLRDNYMLTN----SKLKDWDKMPDNMMTA-AEDNGRVLEDSSSDED 319

[Close]

BLAST of Cp4.1LG15g06730 vs. NCBI nr
Match: XP_004144556.1 (RRP15-like protein [Cucumis sativus] >XP_011658649.1 RRP15-like protein [Cucumis sativus] >KGN43394.1 hypothetical protein Csa_020346 [Cucumis sativus])

HSP 1 Score: 160 bits (406), Expect = 1.17e-44
Identity = 112/180 (62.22%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEKQ------------------RFLIGVATK 96
           GPILSANKKL AEKLAEEEAERKVKGEA+K KQ                  +FLIGVATK
Sbjct: 147 GPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATK 206

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKVVEWG 156
           GVVKLFNAVNKAQHAQKGLNPSR KD KAINKRRKEAFFSELGK  LSATNSNAK+   G
Sbjct: 207 GVVKLFNAVNKAQHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSG 266

Query: 157 LVG---GCPWGRAGVGMVFILMSVVPVSVGFDFHIVVINYTSMMAEDNGRMLEDSSSDED 195
                 G  W  A +   ++L +    S   D+  +  N  +  AEDNGR+LEDSSSDED
Sbjct: 267 GAADTEGPAW--APLRDNYMLTN----SKLKDWDKMPDNMMTA-AEDNGRVLEDSSSDED 319

[Close]

BLAST of Cp4.1LG15g06730 vs. ExPASy TrEMBL
Match: A0A6J1ENV8 (RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435218 PE=3 SV=1)

HSP 1 Score: 161 bits (408), Expect = 2.71e-45
Identity = 114/180 (63.33%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEKQ------------------RFLIGVATK 96
           GPILSANKKL AEKLAEEEAERKVKGEAKKEKQ                  +FLIGVATK
Sbjct: 146 GPILSANKKLVAEKLAEEEAERKVKGEAKKEKQLLAEKGHVKPATYLDSHEKFLIGVATK 205

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKVVEWG 156
           GVVKLFNAVNKAQHAQKGLNPSRAKD KAI+KRRKEAFFSELGK  LSATNSNAK    G
Sbjct: 206 GVVKLFNAVNKAQHAQKGLNPSRAKDAKAISKRRKEAFFSELGKPTLSATNSNAKGNTSG 265

Query: 157 LVG---GCPWGRAGVGMVFILMSVVPVSVGFDFHIVVINYTSMMAEDNGRMLEDSSSDED 195
                 G  W  A +   ++L +    S   D+  +  N T   AEDNGRML DSSSD+D
Sbjct: 266 DAAEAEGPAW--APLRDNYMLTN----SKLKDWDKMPDNTTK--AEDNGRMLGDSSSDDD 317

[Close]

BLAST of Cp4.1LG15g06730 vs. ExPASy TrEMBL
Match: A0A5D3BX18 (RRP15-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84663G00070 PE=3 SV=1)

HSP 1 Score: 160 bits (406), Expect = 5.67e-45
Identity = 112/180 (62.22%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEKQ------------------RFLIGVATK 96
           GPILSANKKL AEKLAEEEAERKVKGEA+K KQ                  +FLIGVATK
Sbjct: 147 GPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATK 206

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKVVEWG 156
           GVVKLFNAVNKAQHAQKGLNPSR KD KAINKRRKEAFFSELGK  LSATNSNAK+   G
Sbjct: 207 GVVKLFNAVNKAQHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSG 266

Query: 157 LVG---GCPWGRAGVGMVFILMSVVPVSVGFDFHIVVINYTSMMAEDNGRMLEDSSSDED 195
                 G  W  A +   ++L +    S   D+  +  N  +  AEDNGR+LEDSSSDED
Sbjct: 267 GAADAEGPAW--APLRDNYMLTN----SKLKDWDKMPDNMMTA-AEDNGRVLEDSSSDED 319

[Close]

BLAST of Cp4.1LG15g06730 vs. ExPASy TrEMBL
Match: A0A0A0K320 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=3 SV=1)

HSP 1 Score: 160 bits (406), Expect = 5.67e-45
Identity = 112/180 (62.22%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEKQ------------------RFLIGVATK 96
           GPILSANKKL AEKLAEEEAERKVKGEA+K KQ                  +FLIGVATK
Sbjct: 147 GPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATK 206

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKVVEWG 156
           GVVKLFNAVNKAQHAQKGLNPSR KD KAINKRRKEAFFSELGK  LSATNSNAK+   G
Sbjct: 207 GVVKLFNAVNKAQHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSG 266

Query: 157 LVG---GCPWGRAGVGMVFILMSVVPVSVGFDFHIVVINYTSMMAEDNGRMLEDSSSDED 195
                 G  W  A +   ++L +    S   D+  +  N  +  AEDNGR+LEDSSSDED
Sbjct: 267 GAADTEGPAW--APLRDNYMLTN----SKLKDWDKMPDNMMTA-AEDNGRVLEDSSSDED 319

[Close]

BLAST of Cp4.1LG15g06730 vs. ExPASy TrEMBL
Match: A0A1S3CFX9 (RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=3 SV=1)

HSP 1 Score: 160 bits (406), Expect = 5.67e-45
Identity = 112/180 (62.22%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEKQ------------------RFLIGVATK 96
           GPILSANKKL AEKLAEEEAERKVKGEA+K KQ                  +FLIGVATK
Sbjct: 147 GPILSANKKLVAEKLAEEEAERKVKGEARKAKQLVGEKGHVKPATYLDSHEKFLIGVATK 206

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKVVEWG 156
           GVVKLFNAVNKAQHAQKGLNPSR KD KAINKRRKEAFFSELGK  LSATNSNAK+   G
Sbjct: 207 GVVKLFNAVNKAQHAQKGLNPSRTKDAKAINKRRKEAFFSELGKPTLSATNSNAKLNTSG 266

Query: 157 LVG---GCPWGRAGVGMVFILMSVVPVSVGFDFHIVVINYTSMMAEDNGRMLEDSSSDED 195
                 G  W  A +   ++L +    S   D+  +  N  +  AEDNGR+LEDSSSDED
Sbjct: 267 GAADAEGPAW--APLRDNYMLTN----SKLKDWDKMPDNMMTA-AEDNGRVLEDSSSDED 319

[Close]

BLAST of Cp4.1LG15g06730 vs. ExPASy TrEMBL
Match: A0A6J1GMJ1 (LOW QUALITY PROTEIN: RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC111455323 PE=3 SV=1)

HSP 1 Score: 159 bits (403), Expect = 1.01e-44
Identity = 93/116 (80.17%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEKQ------------------RFLIGVATK 96
           GPILSANKKL AEKLAEEEAERKVKGEAKKEKQ                  +FLIGVATK
Sbjct: 145 GPILSANKKLVAEKLAEEEAERKVKGEAKKEKQTVGEKGHVKPATYLDSNEKFLIGVATK 204

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKTILSATNSNAKV 134
           GVVKLFNAVNKAQHAQKGLNPSRAKDV+AINKRRKEAFFS LGKTILSATNSNAK+
Sbjct: 205 GVVKLFNAVNKAQHAQKGLNPSRAKDVEAINKRRKEAFFSVLGKTILSATNSNAKL 260

[Close]

BLAST of Cp4.1LG15g06730 vs. TAIR 10
Match: AT5G48240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). )

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-27
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEK------------------QRFLIGVATK 96
           GP+LSA+K L  EKLAE+EAE+K KG+A+K K                  ++ LIGVATK
Sbjct: 149 GPVLSAHKHLIGEKLAEDEAEKKAKGQARKAKHLIAEKGHVKPGSYLDSHEKILIGVATK 208

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKT 124
           GVVKLFNAVNKAQHAQKGLNPSR+KD K + KRRKEAF SELGKT
Sbjct: 209 GVVKLFNAVNKAQHAQKGLNPSRSKDAKVLKKRRKEAFLSELGKT 253

[Close]

BLAST of Cp4.1LG15g06730 vs. TAIR 10
Match: AT5G48240.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-27
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEK------------------QRFLIGVATK 96
           GP+LSA+K L  EKLAE+EAE+K KG+A+K K                  ++ LIGVATK
Sbjct: 149 GPVLSAHKHLIGEKLAEDEAEKKAKGQARKAKHLIAEKGHVKPGSYLDSHEKILIGVATK 208

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKT 124
           GVVKLFNAVNKAQHAQKGLNPSR+KD K + KRRKEAF SELGKT
Sbjct: 209 GVVKLFNAVNKAQHAQKGLNPSRSKDAKVLKKRRKEAFLSELGKT 253

[Close]

BLAST of Cp4.1LG15g06730 vs. TAIR 10
Match: AT5G48240.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 286 Blast hits to 283 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 97; Plants - 41; Viruses - 1; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-27
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 37  GPILSANKKLAAEKLAEEEAERKVKGEAKKEK------------------QRFLIGVATK 96
           GP+LSA+K L  EKLAE+EAE+K KG+A+K K                  ++ LIGVATK
Sbjct: 149 GPVLSAHKHLIGEKLAEDEAEKKAKGQARKAKHLIAEKGHVKPGSYLDSHEKILIGVATK 208

Query: 97  GVVKLFNAVNKAQHAQKGLNPSRAKDVKAINKRRKEAFFSELGKT 124
           GVVKLFNAVNKAQHAQKGLNPSR+KD K + KRRKEAF SELGKT
Sbjct: 209 GVVKLFNAVNKAQHAQKGLNPSRSKDAKVLKKRRKEAFLSELGKT 253

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g06730 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g06730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888922.1	1.83e-46	63.89	RRP15-like protein [Benincasa hispida] >XP_038888940.1 RRP15-like protein [Benin...	[more]
XP_022928388.1	5.60e-45	63.33	RRP15-like protein [Cucurbita moschata]	[more]
KAG6589088.1	5.60e-45	63.33	RRP15-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008462030.1	1.17e-44	62.22	PREDICTED: RRP15-like protein [Cucumis melo]	[more]
XP_004144556.1	1.17e-44	62.22	RRP15-like protein [Cucumis sativus] >XP_011658649.1 RRP15-like protein [Cucumis...	[more]

BLAST of Cp4.1LG15g06730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ENV8	2.71e-45	63.33	RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435218 PE=3 SV=1	[more]
A0A5D3BX18	5.67e-45	62.22	RRP15-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84663...	[more]
A0A0A0K320	5.67e-45	62.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G031550 PE=3 SV=1	[more]
A0A1S3CFX9	5.67e-45	62.22	RRP15-like protein OS=Cucumis melo OX=3656 GN=LOC103500496 PE=3 SV=1	[more]
A0A6J1GMJ1	1.01e-44	80.17	LOW QUALITY PROTEIN: RRP15-like protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Cp4.1LG15g06730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48240.1	2.5e-27	63.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G48240.2	2.5e-27	63.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G48240.3	2.5e-27	63.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..59
IPR012459	Ribosomal RNA-processing protein 15	PFAM	PF07890	Rrp15p	coord: 41..120 e-value: 1.1E-9 score: 38.8
IPR012459	Ribosomal RNA-processing protein 15	PANTHER	PTHR13245	RRP15-LIKE PROTEIN	coord: 69..132 coord: 35..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g06730.1	Cp4.1LG15g06730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0030687	preribosome, large subunit precursor