Cp4.1LG15g06160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g06160
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	signal recognition particle 43 kDa protein, chloroplastic-like
Location	Cp4.1LG15: 6932662 .. 6933585 (+)
RNA-Seq Expression	Cp4.1LG15g06160
Synteny	Cp4.1LG15g06160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACCAGTCTCTCCGCCCCAAGCAACCTCTCCCATCCCCCTCTCGGATTCCCCATCTCAATCTCCGCCGCAACTTCAAATGTTTCACACACTACGCCCTCCAAACCAATAAGCACCACGCACAACGGACTCACAAACCAGAGGACAATGAATCCCACGGCCAGGTCGATGCCATCATCGGAAGCCGAGCTCGGTCCGACGCCGCCGGGATGGAGTATCTAATCAAATGGAAAGACGGGTATTCCCCAACATGGGTCGCCTCCAATTTCATTGCTAAACACATTGTCGCAGACTACGAAGCCCCTTGGTGGATTGCTGCCAAGAAAGCCGACGAATCCGCATTAAAATCCCTCATAGACGCCGCCGACGGCCGCGATTTCGATTCCGTTGACGGAGATGGCAGAACCGCTCTGCTCTTCGTCGCTGGGCTTGGGTCAGAGCCGTGCGTGAGAATGTTAGCCGAGGTCGGTGTGAATCTCGATCACCGTGACTACTGCGGTGGGTTCACGGCGCTGCATATGGCGGCTGGGTATGTGAAACCAGGGACGGTGGAGTTGTTGGTGGATTTGGGGGCGGATCCGGAGATCGAAGATGATCAGGGTCGGACGCCGTTGGGTCTTGCAAAAGGGATACTGAAAGCCACGCCGAGGGTTCATTTCGTGAGGAGAGTGGGGCTGGAGAGAGTGATCGGAGCGGTGGAGAAGGTGTGTTTTGAGTACGCGGAGGTGGAGAAATTGCTGGGGAGAAGGGGGAAGGGAGAGGATTTGGAGTATTTGGTGAAATGGAAGGACGGAGAGGATAATGAGTGGGTGAATGTGGGGTTGATTGCGGCGGAATTGGTGGCGGATTTTGAAGCTGAGTTGGAATGCGCGGTGGCGGAGGCGGTGGTTCAGAAGAGGCTTAGGGAATGGGGACGATGA

mRNA sequence

ATGGACGACCAGTCTCTCCGCCCCAAGCAACCTCTCCCATCCCCCTCTCGGATTCCCCATCTCAATCTCCGCCGCAACTTCAAATGTTTCACACACTACGCCCTCCAAACCAATAAGCACCACGCACAACGGACTCACAAACCAGAGGACAATGAATCCCACGGCCAGGTCGATGCCATCATCGGAAGCCGAGCTCGGTCCGACGCCGCCGGGATGGAGTATCTAATCAAATGGAAAGACGGGTATTCCCCAACATGGGTCGCCTCCAATTTCATTGCTAAACACATTGTCGCAGACTACGAAGCCCCTTGGTGGATTGCTGCCAAGAAAGCCGACGAATCCGCATTAAAATCCCTCATAGACGCCGCCGACGGCCGCGATTTCGATTCCGTTGACGGAGATGGCAGAACCGCTCTGCTCTTCGTCGCTGGGCTTGGGTCAGAGCCGTGCGTGAGAATGTTAGCCGAGGTCGGTGTGAATCTCGATCACCGTGACTACTGCGGTGGGTTCACGGCGCTGCATATGGCGGCTGGGTATGTGAAACCAGGGACGGTGGAGTTGTTGGTGGATTTGGGGGCGGATCCGGAGATCGAAGATGATCAGGGTCGGACGCCGTTGGGTCTTGCAAAAGGGATACTGAAAGCCACGCCGAGGGTTCATTTCGTGAGGAGAGTGGGGCTGGAGAGAGTGATCGGAGCGGTGGAGAAGGTGTGTTTTGAGTACGCGGAGGTGGAGAAATTGCTGGGGAGAAGGGGGAAGGGAGAGGATTTGGAGTATTTGGTGAAATGGAAGGACGGAGAGGATAATGAGTGGGTGAATGTGGGGTTGATTGCGGCGGAATTGGTGGCGGATTTTGAAGCTGAGTTGGAATGCGCGGTGGCGGAGGCGGTGGTTCAGAAGAGGCTTAGGGAATGGGGACGATGA

Coding sequence (CDS)

ATGGACGACCAGTCTCTCCGCCCCAAGCAACCTCTCCCATCCCCCTCTCGGATTCCCCATCTCAATCTCCGCCGCAACTTCAAATGTTTCACACACTACGCCCTCCAAACCAATAAGCACCACGCACAACGGACTCACAAACCAGAGGACAATGAATCCCACGGCCAGGTCGATGCCATCATCGGAAGCCGAGCTCGGTCCGACGCCGCCGGGATGGAGTATCTAATCAAATGGAAAGACGGGTATTCCCCAACATGGGTCGCCTCCAATTTCATTGCTAAACACATTGTCGCAGACTACGAAGCCCCTTGGTGGATTGCTGCCAAGAAAGCCGACGAATCCGCATTAAAATCCCTCATAGACGCCGCCGACGGCCGCGATTTCGATTCCGTTGACGGAGATGGCAGAACCGCTCTGCTCTTCGTCGCTGGGCTTGGGTCAGAGCCGTGCGTGAGAATGTTAGCCGAGGTCGGTGTGAATCTCGATCACCGTGACTACTGCGGTGGGTTCACGGCGCTGCATATGGCGGCTGGGTATGTGAAACCAGGGACGGTGGAGTTGTTGGTGGATTTGGGGGCGGATCCGGAGATCGAAGATGATCAGGGTCGGACGCCGTTGGGTCTTGCAAAAGGGATACTGAAAGCCACGCCGAGGGTTCATTTCGTGAGGAGAGTGGGGCTGGAGAGAGTGATCGGAGCGGTGGAGAAGGTGTGTTTTGAGTACGCGGAGGTGGAGAAATTGCTGGGGAGAAGGGGGAAGGGAGAGGATTTGGAGTATTTGGTGAAATGGAAGGACGGAGAGGATAATGAGTGGGTGAATGTGGGGTTGATTGCGGCGGAATTGGTGGCGGATTTTGAAGCTGAGTTGGAATGCGCGGTGGCGGAGGCGGTGGTTCAGAAGAGGCTTAGGGAATGGGGACGATGA

Protein sequence

MDDQSLRPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREWGR

Homology

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BLAST of Cp4.1LG15g06160 vs. ExPASy Swiss-Prot
Match: O22265 (Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAO PE=1 SV=2)

HSP 1 Score: 300.1 bits (767), Expect = 3.0e-80
Identity = 157/302 (51.99%), Postives = 211/302 (69.87%), Query Frame = 0


Query: 14  SPSRIPHLNLRRNFKCFTHYALQTNKHHA-----QRTHKPEDNESHGQVDAIIGSRARSD 73
           SP  +P   +   F+     A+Q N         +     E + S+G+V+ IIGSR   +
Sbjct: 38  SPESLPIRRIELCFRGAICAAVQRNYEETTSSVEEAEEDDESSSSYGEVNKIIGSRTAGE 97

Query: 74  AAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDF 133
            A MEYLI+WKDG+SP+WV S++IA  +V++YE PWW AA+KADE AL  L+   + RD 
Sbjct: 98  GA-MEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL---EDRDV 157

Query: 134 DSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELL 193
           D+VD +GRTALLFVAGLGS+ CVR+LAE G +LDHRD  GG TALHMAAGYV+P  VE L
Sbjct: 158 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 217

Query: 194 VDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEKVCFEYAEVE 253
           V+LGAD E+ED++G T L LA+ ILK TP+   + F RR+GLE+VI  +E   FEYAEV+
Sbjct: 218 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVD 277

Query: 254 KLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREW 308
           +++ +RGKG+D+EYLV+WKDG D EWV    +A ++  D+E  LE AVAE+V+ KR+ + 
Sbjct: 278 EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEYAVAESVIGKRVGDD 335

[Close]

BLAST of Cp4.1LG15g06160 vs. ExPASy Swiss-Prot
Match: Q8LSQ2 (Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0131900 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.5e-63
Identity = 137/320 (42.81%), Postives = 189/320 (59.06%), Query Frame = 0


Query: 7   RPKQPLPSPSRIPHLNL---------RRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQV 66
           R K P P+  R P L++          R       +  QTN  +   +   +D+E++G+V
Sbjct: 12  RLKPPNPNAQRTPALSITVPFRLRLPNRRLTAAAVFQDQTNPRN-PASKGGDDDEAYGEV 71

Query: 67  DAIIGSR-----------ARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWI 126
           D I+ SR           + +     EYL++WKDG+ P+W+ +  IA  +VA+YE PWW 
Sbjct: 72  DRIVSSRTIKNPVFAEDGSATTVTATEYLVEWKDGHEPSWIPAEAIAADVVAEYETPWWT 131

Query: 127 AAKKADESALKSLI-DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRD 186
           AAKKAD + + +L+ D    RD D+ D  GRTA+ F AGLGSE CVR LAE G ++   +
Sbjct: 132 AAKKADAAEITALLADETLRRDPDAEDAQGRTAMHFAAGLGSEECVRALAEAGADVGRPE 191

Query: 187 YC-GGFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPR---VHF 246
              GG T LH+A GY +P  V  L++LGA+PE  D QGRTPL L + +L  TP+     F
Sbjct: 192 RAGGGLTPLHIAVGYGRPAAVRALLELGAEPEAPDGQGRTPLELVQDVLAKTPKGNPATF 251

Query: 247 VRRVGLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAEL 302
            RR+ LE     +EK  +E+ EVEK++  RG+G+  EYLV+W+DG D EWV    +A +L
Sbjct: 252 ERRLALEAAAKELEKAVYEWGEVEKVVDGRGEGKWREYLVEWRDGGDREWVRAAWVAEDL 311

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BLAST of Cp4.1LG15g06160 vs. ExPASy Swiss-Prot
Match: Q6DGX3 (Ankyrin repeat domain-containing protein 54 OS=Danio rerio OX=7955 GN=ankrd54 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-07
Identity = 50/162 (30.86%), Postives = 74/162 (45.68%), Query Frame = 0


Query: 112 DESALKSLIDAADGRDFDSV-------------DGDGRTALLFVAGLGSEPCVRMLAEVG 171
           D  A+K L +AA+  D D+V             D  GRTAL F +  G+E  V++L   G
Sbjct: 122 DLHAVKRLREAANSNDIDTVRRLLEDDTDPCAADDKGRTALHFSSCNGNETIVQLLLSYG 181

Query: 172 VNLDHRDYCGGFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPR 231
            + + RD  G  T LH+AA       +  L+  GA  +  D  GRTPL LA+  L     
Sbjct: 182 ADPNQRDSLGN-TPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLARSKLNILQE 241

Query: 232 VHFVRRVGLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYL 261
                   LE + G V ++     E   ++G+  + E LE++
Sbjct: 242 GD---SRSLETLRGEVTQIIQMLREYLNIMGQSEEREKLEHI 279

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BLAST of Cp4.1LG15g06160 vs. ExPASy Swiss-Prot
Match: Q1LZC5 (Ankyrin repeat domain-containing protein 54 OS=Bos taurus OX=9913 GN=ANKRD54 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-07
Identity = 52/159 (32.70%), Postives = 74/159 (46.54%), Query Frame = 0


Query: 115 ALKSLIDAADGRDFDSV-------------DGDGRTALLFVAGLGSEPCVRMLAEVGVNL 174
           ALK L D+A+  D ++V             D  GRTAL F +  G++  V++L + G + 
Sbjct: 109 ALKRLRDSANANDVETVQQLLEEGTDPCAADDKGRTALHFASCNGNDQIVQLLLDHGADP 168

Query: 175 DHRDYCGGFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHF 234
           + RD  G  T LH+AA       +  L+  GA  +  D  GRTPL LAK  L      H 
Sbjct: 169 NQRDGLGN-TPLHLAACTNHAPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGH- 228

Query: 235 VRRVGLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYL 261
                LE V   V+++     E  + LGR  + E L+ L
Sbjct: 229 --SQCLEAVRLEVKQIIQMLREYLERLGRHEQRERLDDL 263

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BLAST of Cp4.1LG15g06160 vs. ExPASy Swiss-Prot
Match: Q566C8 (Ankyrin repeat domain-containing protein 54 OS=Rattus norvegicus OX=10116 GN=Ankrd54 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-07
Identity = 51/159 (32.08%), Postives = 74/159 (46.54%), Query Frame = 0


Query: 115 ALKSLIDAADGRDFDSV-------------DGDGRTALLFVAGLGSEPCVRMLAEVGVNL 174
           ALK L D+A+  D ++V             D  GRTAL F +  G++  V++L + G + 
Sbjct: 109 ALKRLRDSANANDIETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADP 168

Query: 175 DHRDYCGGFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHF 234
           + +D  G  T LH+AA       +  L+  GA  +  D  GRTPL LAK  L      H 
Sbjct: 169 NQQDGLGN-TPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGH- 228

Query: 235 VRRVGLERVIGAVEKVCFEYAEVEKLLGRRGKGEDLEYL 261
                LE V   V+++     E  + LGR  + E L+ L
Sbjct: 229 --SQCLEAVRLEVKQIIHMLREYLERLGRHEQRERLDDL 263

[Close]

BLAST of Cp4.1LG15g06160 vs. NCBI nr
Match: KAG6572145.1 (Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011794.1 Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 608 bits (1567), Expect = 3.33e-219
Identity = 296/307 (96.42%), Postives = 302/307 (98.37%), Query Frame = 0


Query: 1   MDDQSLRPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAI 60
           MDDQSL PKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHG+VDAI
Sbjct: 1   MDDQSLCPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAI 60

Query: 61  IGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLI 120
           IGSRARSDA GMEYLIKWK+G+SPTWVASNFIAKHIVADYEAPWW AAKKADESALKSLI
Sbjct: 61  IGSRARSDATGMEYLIKWKNGHSPTWVASNFIAKHIVADYEAPWWTAAKKADESALKSLI 120

Query: 121 DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYV 180
           DAA+GRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMA GYV
Sbjct: 121 DAANGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMATGYV 180

Query: 181 KPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFE 240
           KPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFE
Sbjct: 181 KPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFE 240

Query: 241 YAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQK 300
           YAEVE+LLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELE AVAEAVV+K
Sbjct: 241 YAEVERLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELEYAVAEAVVEK 300

Query: 301 RLREWGR 307
           RLREWGR
Sbjct: 301 RLREWGR 307

[Close]

BLAST of Cp4.1LG15g06160 vs. NCBI nr
Match: XP_022969184.1 (signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 602 bits (1553), Expect = 4.54e-217
Identity = 292/307 (95.11%), Postives = 301/307 (98.05%), Query Frame = 0


Query: 1   MDDQSLRPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAI 60
           MDDQSL PKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHG+VDAI
Sbjct: 1   MDDQSLCPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAI 60

Query: 61  IGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLI 120
           IGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWW AAKKA+ESALKSLI
Sbjct: 61  IGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWTAAKKANESALKSLI 120

Query: 121 DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYV 180
           DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAE GVNLDHRDYCGGFTALHMAAGYV
Sbjct: 121 DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEAGVNLDHRDYCGGFTALHMAAGYV 180

Query: 181 KPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFE 240
           KPGTVELLVDLGADPE+ED++GRTPLGLAKGILKATP+VHFVRRVGLERVIGAVEKVCFE
Sbjct: 181 KPGTVELLVDLGADPEVEDNKGRTPLGLAKGILKATPKVHFVRRVGLERVIGAVEKVCFE 240

Query: 241 YAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQK 300
           YAEVE+LLGRRG GEDLEYLVKWKDGEDNEWVNVGLI+AELVADFEA LE AVAEAVV+K
Sbjct: 241 YAEVERLLGRRGMGEDLEYLVKWKDGEDNEWVNVGLISAELVADFEAALEYAVAEAVVEK 300

Query: 301 RLREWGR 307
           RLREWGR
Sbjct: 301 RLREWGR 307

[Close]

BLAST of Cp4.1LG15g06160 vs. NCBI nr
Match: XP_038888741.1 (signal recognition particle 43 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 468 bits (1204), Expect = 7.35e-163
Identity = 237/306 (77.45%), Postives = 264/306 (86.27%), Query Frame = 0


Query: 6   LRPKQPLPSP----SRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAII 65
           L PK PLP P    SR PHLNLRRNFK FT YA+Q+++   Q+T K ED+ES+G+VD II
Sbjct: 15  LSPKPPLPFPPSSSSRNPHLNLRRNFKHFTPYAVQSDQPLTQQTQKSEDDESYGEVDGII 74

Query: 66  GSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLID 125
           GSRA SDA GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKADESALKSLID
Sbjct: 75  GSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLID 134

Query: 126 AADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVK 185
           A DGRDFD+VD DGRTALLFVAGLGS PCVRMLAE GVNLDHRD  GGFTALH+AAGYVK
Sbjct: 135 AGDGRDFDAVDEDGRTALLFVAGLGSNPCVRMLAEAGVNLDHRDNSGGFTALHLAAGYVK 194

Query: 186 PGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEY 245
           P TVELLV+LGADPEIED++GRTPL LAK ILKATPRV F+RR+GLERVIGAVEKV +EY
Sbjct: 195 PETVELLVELGADPEIEDEKGRTPLVLAKEILKATPRVQFMRRIGLERVIGAVEKVVYEY 254

Query: 246 AEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKR 305
           AEVE+LL +RGKGE+LEYLVKWKDGEDNEWV VGLIA +LVADFEA LE AVAEAVV KR
Sbjct: 255 AEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADFEAGLEYAVAEAVVGKR 314

Query: 306 LREWGR 307
             + G+
Sbjct: 315 FGDDGK 320

[Close]

BLAST of Cp4.1LG15g06160 vs. NCBI nr
Match: XP_004153574.1 (signal recognition particle 43 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 448 bits (1153), Expect = 2.14e-155
Identity = 224/302 (74.17%), Postives = 259/302 (85.76%), Query Frame = 0


Query: 6   LRPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRA 65
           L PK PLP PS IPHLNLRRNF  FT YA+Q+++   Q+T KPED+ES+G+VD IIGSRA
Sbjct: 15  LPPKTPLPFPSPIPHLNLRRNFTHFTAYAVQSDQPITQQTQKPEDDESYGEVDGIIGSRA 74

Query: 66  RSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADG 125
             DA GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKADESALKSLID+ D 
Sbjct: 75  LPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLIDSGDE 134

Query: 126 RDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTV 185
           RDFD+VD DGRTALLFV+GLGS  CVR+LA+ GVNL+HRD  GGFTALHMAAGYVKP TV
Sbjct: 135 RDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNLNHRDNSGGFTALHMAAGYVKPETV 194

Query: 186 ELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVE 245
           ELLV+LGADPEI+D++GRT L LAK ILKATPRV F+RR+GLE+VI AVEKV +EYAEVE
Sbjct: 195 ELLVELGADPEIDDEKGRTALELAKEILKATPRVQFMRRLGLEKVIRAVEKVVYEYAEVE 254

Query: 246 KLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREW 305
           +LL +RGKGE+LEYLVKWKDGEDNEWV VGLIA +LV D+EA LE AVAEAVV KR+ + 
Sbjct: 255 ELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVGDYEAGLEYAVAEAVVGKRVGDD 314

Query: 306 GR 307
           G+
Sbjct: 315 GK 316

[Close]

BLAST of Cp4.1LG15g06160 vs. NCBI nr
Match: XP_008447899.1 (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 448 bits (1153), Expect = 3.27e-155
Identity = 222/297 (74.75%), Postives = 259/297 (87.21%), Query Frame = 0


Query: 11  PLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRARSDAA 70
           P+P PS IPHLNLRRNF  FT YA+Q+++   Q+T+KPED+ES+G+VD IIGSRA  DA 
Sbjct: 24  PIPFPSTIPHLNLRRNFTHFTAYAVQSDQPITQQTYKPEDDESYGEVDGIIGSRALPDAT 83

Query: 71  GMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDFDS 130
           GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKAD+SAL+SLID+ D RDFD+
Sbjct: 84  GMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADKSALESLIDSGDERDFDA 143

Query: 131 VDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVD 190
           VD DGRTALLFV+GLGS  CVR+LAE GVNL+HRD  GGFTALHMAAGYVKP TVELLV+
Sbjct: 144 VDEDGRTALLFVSGLGSVECVRILAEAGVNLNHRDNSGGFTALHMAAGYVKPETVELLVE 203

Query: 191 LGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVEKLLGR 250
           LGADPEIED++GRT L LAK ILKATPRV F+RR+GLE+VIGAVEKV +EYAEVE+LL +
Sbjct: 204 LGADPEIEDEKGRTALELAKEILKATPRVQFMRRLGLEKVIGAVEKVVYEYAEVEELLEK 263

Query: 251 RGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREWGR 307
           RGKGE+LEYLVKWKDGEDNEWV VGLIA +LVAD+EA LE AVAEAVV KR+ + G+
Sbjct: 264 RGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADYEAGLEYAVAEAVVGKRVGDEGK 320

[Close]

BLAST of Cp4.1LG15g06160 vs. ExPASy TrEMBL
Match: A0A6J1I1V3 (signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468257 PE=4 SV=1)

HSP 1 Score: 602 bits (1553), Expect = 2.20e-217
Identity = 292/307 (95.11%), Postives = 301/307 (98.05%), Query Frame = 0


Query: 1   MDDQSLRPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAI 60
           MDDQSL PKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHG+VDAI
Sbjct: 1   MDDQSLCPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGEVDAI 60

Query: 61  IGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLI 120
           IGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWW AAKKA+ESALKSLI
Sbjct: 61  IGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWTAAKKANESALKSLI 120

Query: 121 DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYV 180
           DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAE GVNLDHRDYCGGFTALHMAAGYV
Sbjct: 121 DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEAGVNLDHRDYCGGFTALHMAAGYV 180

Query: 181 KPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFE 240
           KPGTVELLVDLGADPE+ED++GRTPLGLAKGILKATP+VHFVRRVGLERVIGAVEKVCFE
Sbjct: 181 KPGTVELLVDLGADPEVEDNKGRTPLGLAKGILKATPKVHFVRRVGLERVIGAVEKVCFE 240

Query: 241 YAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQK 300
           YAEVE+LLGRRG GEDLEYLVKWKDGEDNEWVNVGLI+AELVADFEA LE AVAEAVV+K
Sbjct: 241 YAEVERLLGRRGMGEDLEYLVKWKDGEDNEWVNVGLISAELVADFEAALEYAVAEAVVEK 300

Query: 301 RLREWGR 307
           RLREWGR
Sbjct: 301 RLREWGR 307

[Close]

BLAST of Cp4.1LG15g06160 vs. ExPASy TrEMBL
Match: A0A0A0K634 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1)

HSP 1 Score: 448 bits (1153), Expect = 1.04e-155
Identity = 224/302 (74.17%), Postives = 259/302 (85.76%), Query Frame = 0


Query: 6   LRPKQPLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRA 65
           L PK PLP PS IPHLNLRRNF  FT YA+Q+++   Q+T KPED+ES+G+VD IIGSRA
Sbjct: 15  LPPKTPLPFPSPIPHLNLRRNFTHFTAYAVQSDQPITQQTQKPEDDESYGEVDGIIGSRA 74

Query: 66  RSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADG 125
             DA GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKADESALKSLID+ D 
Sbjct: 75  LPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLIDSGDE 134

Query: 126 RDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTV 185
           RDFD+VD DGRTALLFV+GLGS  CVR+LA+ GVNL+HRD  GGFTALHMAAGYVKP TV
Sbjct: 135 RDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNLNHRDNSGGFTALHMAAGYVKPETV 194

Query: 186 ELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVE 245
           ELLV+LGADPEI+D++GRT L LAK ILKATPRV F+RR+GLE+VI AVEKV +EYAEVE
Sbjct: 195 ELLVELGADPEIDDEKGRTALELAKEILKATPRVQFMRRLGLEKVIRAVEKVVYEYAEVE 254

Query: 246 KLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREW 305
           +LL +RGKGE+LEYLVKWKDGEDNEWV VGLIA +LV D+EA LE AVAEAVV KR+ + 
Sbjct: 255 ELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVGDYEAGLEYAVAEAVVGKRVGDD 314

Query: 306 GR 307
           G+
Sbjct: 315 GK 316

[Close]

BLAST of Cp4.1LG15g06160 vs. ExPASy TrEMBL
Match: A0A1S3BHX6 (signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490246 PE=4 SV=1)

HSP 1 Score: 448 bits (1153), Expect = 1.58e-155
Identity = 222/297 (74.75%), Postives = 259/297 (87.21%), Query Frame = 0


Query: 11  PLPSPSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKPEDNESHGQVDAIIGSRARSDAA 70
           P+P PS IPHLNLRRNF  FT YA+Q+++   Q+T+KPED+ES+G+VD IIGSRA  DA 
Sbjct: 24  PIPFPSTIPHLNLRRNFTHFTAYAVQSDQPITQQTYKPEDDESYGEVDGIIGSRALPDAT 83

Query: 71  GMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDFDS 130
           GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKAD+SAL+SLID+ D RDFD+
Sbjct: 84  GMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADKSALESLIDSGDERDFDA 143

Query: 131 VDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELLVD 190
           VD DGRTALLFV+GLGS  CVR+LAE GVNL+HRD  GGFTALHMAAGYVKP TVELLV+
Sbjct: 144 VDEDGRTALLFVSGLGSVECVRILAEAGVNLNHRDNSGGFTALHMAAGYVKPETVELLVE 203

Query: 191 LGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFEYAEVEKLLGR 250
           LGADPEIED++GRT L LAK ILKATPRV F+RR+GLE+VIGAVEKV +EYAEVE+LL +
Sbjct: 204 LGADPEIEDEKGRTALELAKEILKATPRVQFMRRLGLEKVIGAVEKVVYEYAEVEELLEK 263

Query: 251 RGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREWGR 307
           RGKGE+LEYLVKWKDGEDNEWV VGLIA +LVAD+EA LE AVAEAVV KR+ + G+
Sbjct: 264 RGKGENLEYLVKWKDGEDNEWVKVGLIAEDLVADYEAGLEYAVAEAVVGKRVGDEGK 320

[Close]

BLAST of Cp4.1LG15g06160 vs. ExPASy TrEMBL
Match: A0A6J1JM92 (signal recognition particle 43 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486468 PE=4 SV=1)

HSP 1 Score: 439 bits (1129), Expect = 4.56e-151
Identity = 224/307 (72.96%), Postives = 260/307 (84.69%), Query Frame = 0


Query: 6   LRPKQPLPS-PSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKP----EDNESHGQVDAI 65
           L PK PLP  PS I HL+LRR FK FT YA+  N+   Q+T +P    ED+ES+G+VD I
Sbjct: 64  LPPKPPLPKLPSPILHLHLRRTFKSFTAYAV--NEPLTQQTQQPDNFPEDDESYGEVDGI 123

Query: 66  IGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLI 125
           IGSR+ +DA GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKADESALKSLI
Sbjct: 124 IGSRSLADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLI 183

Query: 126 DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYV 185
           DAAD RDF++VD DGRTALLFVAGLGSEPCVR+LAE G +LDHRD  GGFTALHMAAGYV
Sbjct: 184 DAADSRDFNAVDEDGRTALLFVAGLGSEPCVRILAEAGADLDHRDKSGGFTALHMAAGYV 243

Query: 186 KPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFE 245
           KPGTVELL++LGADPE++DD+GRTPL LA+ I+KATPRV F RR+GLERVIGA+E+V FE
Sbjct: 244 KPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFARRLGLERVIGALERVVFE 303

Query: 246 YAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQK 305
           +AEVE+LL +RGKGE+LEYLVKWKDGEDNEWV   LIA +LVADFEA LE AVAEAVV K
Sbjct: 304 FAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVADFEAGLEYAVAEAVVGK 363

Query: 306 RLREWGR 307
           RL + G+
Sbjct: 364 RLGDDGK 368

[Close]

BLAST of Cp4.1LG15g06160 vs. ExPASy TrEMBL
Match: A0A6J1EP65 (signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435281 PE=4 SV=1)

HSP 1 Score: 439 bits (1128), Expect = 8.22e-151
Identity = 223/307 (72.64%), Postives = 260/307 (84.69%), Query Frame = 0


Query: 6   LRPKQPLPS-PSRIPHLNLRRNFKCFTHYALQTNKHHAQRTHKP----EDNESHGQVDAI 65
           L PK PLP  PS I HL+LRR FK FT YA+  N+   Q+T +P    ED+ES+G+VD I
Sbjct: 71  LPPKPPLPKLPSPILHLHLRRTFKSFTAYAV--NEPLTQQTQQPDNFPEDDESYGEVDGI 130

Query: 66  IGSRARSDAAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLI 125
           IGSRA +DA GMEYLIKWKDG+SP+WV S+FIAK +VA+YE PWW AAKKADESALKSLI
Sbjct: 131 IGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLI 190

Query: 126 DAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYV 185
           DAAD RDF++VD DGRTALLFVAGLGSEPC+R+LAE G +LDHRD  GGFTALHMAAGYV
Sbjct: 191 DAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDHRDKSGGFTALHMAAGYV 250

Query: 186 KPGTVELLVDLGADPEIEDDQGRTPLGLAKGILKATPRVHFVRRVGLERVIGAVEKVCFE 245
           KPGTVELL++LGADPE++DD+GRTPL LA+ I+KATPRV F RR+GLERVIGA+E+V FE
Sbjct: 251 KPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFARRLGLERVIGALERVVFE 310

Query: 246 YAEVEKLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQK 305
           +AEVE+LL +RGKGE+LEYLVKWKDGEDNEWV   LIA +LVADFEA LE AVAEAVV K
Sbjct: 311 FAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVADFEAGLEYAVAEAVVGK 370

Query: 306 RLREWGR 307
           R+ + G+
Sbjct: 371 RVGDDGK 375

[Close]

BLAST of Cp4.1LG15g06160 vs. TAIR 10
Match: AT2G47450.1 (chloroplast signal recognition particle component (CAO) )

HSP 1 Score: 300.1 bits (767), Expect = 2.1e-81
Identity = 157/302 (51.99%), Postives = 211/302 (69.87%), Query Frame = 0


Query: 14  SPSRIPHLNLRRNFKCFTHYALQTNKHHA-----QRTHKPEDNESHGQVDAIIGSRARSD 73
           SP  +P   +   F+     A+Q N         +     E + S+G+V+ IIGSR   +
Sbjct: 38  SPESLPIRRIELCFRGAICAAVQRNYEETTSSVEEAEEDDESSSSYGEVNKIIGSRTAGE 97

Query: 74  AAGMEYLIKWKDGYSPTWVASNFIAKHIVADYEAPWWIAAKKADESALKSLIDAADGRDF 133
            A MEYLI+WKDG+SP+WV S++IA  +V++YE PWW AA+KADE AL  L+   + RD 
Sbjct: 98  GA-MEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL---EDRDV 157

Query: 134 DSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPGTVELL 193
           D+VD +GRTALLFVAGLGS+ CVR+LAE G +LDHRD  GG TALHMAAGYV+P  VE L
Sbjct: 158 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 217

Query: 194 VDLGADPEIEDDQGRTPLGLAKGILKATPR---VHFVRRVGLERVIGAVEKVCFEYAEVE 253
           V+LGAD E+ED++G T L LA+ ILK TP+   + F RR+GLE+VI  +E   FEYAEV+
Sbjct: 218 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVD 277

Query: 254 KLLGRRGKGEDLEYLVKWKDGEDNEWVNVGLIAAELVADFEAELECAVAEAVVQKRLREW 308
           +++ +RGKG+D+EYLV+WKDG D EWV    +A ++  D+E  LE AVAE+V+ KR+ + 
Sbjct: 278 EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEYAVAESVIGKRVGDD 335

[Close]

BLAST of Cp4.1LG15g06160 vs. TAIR 10
Match: AT4G35450.3 (ankyrin repeat-containing protein 2 )

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-09
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 108 AKKADESALKSLIDAADGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYC 167
           A   D   LK+ +  A G + D  D +GRTAL F  G G   C ++L + G +++  D  
Sbjct: 226 ASLGDVEGLKAAL--ASGGNKDEEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDK- 285

Query: 168 GGFTALHMAAGYVKPGTVELLVDLGADPEIEDDQGRTPLGLAK 211
              T LH AAGY +   V LL++ GA   +++   +TP+ +AK
Sbjct: 286 NKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAK 325

[Close]

BLAST of Cp4.1LG15g06160 vs. TAIR 10
Match: AT5G09410.1 (ethylene induced calmodulin binding protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-07
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 124 DGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPG 183
           +G+  + +D DG+  L FVA LG +  ++ +   GVN++ RD   G++ALH AA   +  
Sbjct: 584 EGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVNINFRD-ANGWSALHWAAFSGREE 643

Query: 184 TVELLVDLGADP-EIEDDQGRTPLG 208
           TV +LV LGAD   + D     PLG
Sbjct: 644 TVAVLVSLGADAGALTDPSPELPLG 667

[Close]

BLAST of Cp4.1LG15g06160 vs. TAIR 10
Match: AT5G09410.2 (ethylene induced calmodulin binding protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-07
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 124 DGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPG 183
           +G+  + +D DG+  L FVA LG +  ++ +   GVN++ RD   G++ALH AA   +  
Sbjct: 602 EGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVNINFRD-ANGWSALHWAAFSGREE 661

Query: 184 TVELLVDLGADP-EIEDDQGRTPLG 208
           TV +LV LGAD   + D     PLG
Sbjct: 662 TVAVLVSLGADAGALTDPSPELPLG 685

[Close]

BLAST of Cp4.1LG15g06160 vs. TAIR 10
Match: AT5G09410.3 (ethylene induced calmodulin binding protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-07
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 124 DGRDFDSVDGDGRTALLFVAGLGSEPCVRMLAEVGVNLDHRDYCGGFTALHMAAGYVKPG 183
           +G+  + +D DG+  L FVA LG +  ++ +   GVN++ RD   G++ALH AA   +  
Sbjct: 661 EGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVNINFRD-ANGWSALHWAAFSGREE 720

Query: 184 TVELLVDLGADP-EIEDDQGRTPLG 208
           TV +LV LGAD   + D     PLG
Sbjct: 721 TVAVLVSLGADAGALTDPSPELPLG 744

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g06160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22265	3.0e-80	51.99	Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thalian...	[more]
Q8LSQ2	2.5e-63	42.81	Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sati...	[more]
Q6DGX3	1.1e-07	30.86	Ankyrin repeat domain-containing protein 54 OS=Danio rerio OX=7955 GN=ankrd54 PE...	[more]
Q1LZC5	2.0e-07	32.70	Ankyrin repeat domain-containing protein 54 OS=Bos taurus OX=9913 GN=ANKRD54 PE=...	[more]
Q566C8	3.3e-07	32.08	Ankyrin repeat domain-containing protein 54 OS=Rattus norvegicus OX=10116 GN=Ank...	[more]

BLAST of Cp4.1LG15g06160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572145.1	3.33e-219	96.42	Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita ar...	[more]
XP_022969184.1	4.54e-217	95.11	signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita maxima...	[more]
XP_038888741.1	7.35e-163	77.45	signal recognition particle 43 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_004153574.1	2.14e-155	74.17	signal recognition particle 43 kDa protein, chloroplastic [Cucumis sativus]	[more]
XP_008447899.1	3.27e-155	74.75	PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis me...	[more]

BLAST of Cp4.1LG15g06160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1V3	2.20e-217	95.11	signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita maxi...	[more]
A0A0A0K634	1.04e-155	74.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1	[more]
A0A1S3BHX6	1.58e-155	74.75	signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=365...	[more]
A0A6J1JM92	4.56e-151	72.96	signal recognition particle 43 kDa protein, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1EP65	8.22e-151	72.64	signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita mosc...	[more]

BLAST of Cp4.1LG15g06160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47450.1	2.1e-81	51.99	chloroplast signal recognition particle component (CAO)	[more]
AT4G35450.3	4.8e-09	34.95	ankyrin repeat-containing protein 2	[more]
AT5G09410.1	1.2e-07	38.82	ethylene induced calmodulin binding protein	[more]
AT5G09410.2	1.2e-07	38.82	ethylene induced calmodulin binding protein	[more]
AT5G09410.3	1.2e-07	38.82	ethylene induced calmodulin binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 99..130 e-value: 1600.0 score: 3.6 coord: 168..197 e-value: 0.0029 score: 26.9 coord: 134..163 e-value: 47.0 score: 12.8
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 134..166 score: 9.217119
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 168..200 score: 11.08682
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 240..290 e-value: 8.6E-9 score: 45.2 coord: 53..105 e-value: 0.26 score: 20.3
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 242..307 score: 9.335701
None	No IPR available	GENE3D	2.40.50.40		coord: 52..98 e-value: 2.8E-12 score: 48.0
None	No IPR available	GENE3D	2.40.50.40		coord: 240..299 e-value: 4.1E-18 score: 66.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR24128	HOMEOBOX PROTEIN WARIAI	coord: 21..304
None	No IPR available	PROSITE	PS50297	ANK_REP_REGION	coord: 168..200 score: 9.728291
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 99..236 e-value: 9.2E-31 score: 108.2
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 99..210
IPR020683	Ankyrin repeat-containing domain	PFAM	PF12796	Ank_2	coord: 106..199 e-value: 5.7E-10 score: 39.7
IPR030300	Signal recognition particle 43kDa protein	PANTHER	PTHR24128:SF43	SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC	coord: 21..304
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 50..104
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 240..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g06160.1	Cp4.1LG15g06160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070208	protein heterotrimerization
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0080085	signal recognition particle, chloroplast targeting
molecular_function	GO:0097718	disordered domain specific binding
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0030674	protein-macromolecule adaptor activity
molecular_function	GO:0005515	protein binding