Cp4.1LG15g06140 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g06140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionprotein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like
LocationCp4.1LG15: 6779270 .. 6780477 (-)
RNA-Seq ExpressionCp4.1LG15g06140
SyntenyCp4.1LG15g06140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATTCAATTTGAACCAATGACGGCCGCTCTTTCCGCCGGCGCAGCCTCTCCGACATCACCGGGTCACCGGCTCGGTTCGAACTTCATCGGAAAATTGAATCAATGGAAAGGCGTTGGCATTTCACAAATCTTTCGAACATTTTCGATGAGGGGAACGCTGATGCAAGCTGGTTCGTGAGCCGATGACTCTGCGACGTTCGAGATATCCGTGGAAAATGCTCTCCATGTTCTTGGAGTCTCCGATGAGGCCTCGTTCGATGATATTCTTCGTGCTAGGAAGTCGATTATGGCCGCTTGCAAGGACGACCAAGAAACAGTCGCGCAGGTAGAAGGAGTTCGATTTTTTTTACTTCGTTTGGGGAATTTTGGTATTTTAGGGATTTAAATATTGCGTTCCCTTTGATTTGAGTATTGGCATTCGAAATTGGGAAGTCCGATTGATTTGGTAATTATTCGTGTGATCTTTGTGTGTGTGTGTGTGTGTTTCTATATGCTACTAATATGATCGGCATGGAGCTTGCGAACTTTTTGAGCGAGTTAAGCTTTCCTTTTGTTTTGCCAACACTCTATAGAATGGCTATTACCACTTTAGCAACGATCTTTGAGTTTCTGGCTCCGGCGGCAATTAGATTCGAACAAATTCAGATACTTGCTACTGCATGAGGAGGCAGTTATGGTTTTGAACGAAATACCGTACATGGATTATTAGATTTATTTGCATGTAGCTTTGTAGTTTCTTTGTATTTTTTTTTACCAAAAGGAACGTGAAGCTTGGTAAGGAGTTCTGCTAGTGCTAATTCTTTGTGCTTTTTAGTTCTTACAAGATTTGGATGCAAGTAAATCTTCACAAATTTGGAGAACAATTGAAGAAATCGCACATTTTTTCTGCTTGCGAATACTGTTGAGGTTTTGTGAAATAAACTTGATGCTTGCGAATACTGCGTCTATTTCCTTTCGAATCAAAATTTATTTTTTATGCTACATGTGATATTTATTTATCCTATTTGTGTTACATATATTCATGAACTTTGACATAAATGAAGTGATTTCGTTTCTTGTGCACAAAAGTATGCTGAGAAATACAGATCTCACGTCTTGGAGCCATTGTATAGATCGTGCAATTTTCATATGATAATATTTGCAATTTTCTCTCTGCTGTTCTTCTTTGCAGGTGCAGTAGTCGGTTCTGCAGTTGAGAATTGA

mRNA sequence

ATGTTGATTCAATTTGAACCAATGACGGCCGCTCTTTCCGCCGGCGCAGCCTCTCCGACATCACCGGGTCACCGGCTCGGTTCGAACTTCATCGGAAAATTGAATCAATGGAAAGGCGTTGGCATTTCACAAATCTTTCGAACATTTTCGATGAGGGGAACGCTGATGCAAGCTGGTGCAGTAGTCGGTTCTGCAGTTGAGAATTGA

Coding sequence (CDS)

ATGTTGATTCAATTTGAACCAATGACGGCCGCTCTTTCCGCCGGCGCAGCCTCTCCGACATCACCGGGTCACCGGCTCGGTTCGAACTTCATCGGAAAATTGAATCAATGGAAAGGCGTTGGCATTTCACAAATCTTTCGAACATTTTCGATGAGGGGAACGCTGATGCAAGCTGGTGCAGTAGTCGGTTCTGCAGTTGAGAATTGA

Protein sequence

MLIQFEPMTAALSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGAVVGSAVEN
Homology
BLAST of Cp4.1LG15g06140 vs. NCBI nr
Match: KAG6572126.1 (hypothetical protein SDJN03_28854, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 5.06e-23
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 8  MTAALS-------AGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGA 60
          MTAALS       AGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTF+MRG L+QAG+
Sbjct: 1  MTAALSVRLNRLSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFAMRGMLVQAGS 60

BLAST of Cp4.1LG15g06140 vs. NCBI nr
Match: XP_038887421.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 1.51e-08
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 12 LSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGA 60
          LS GAA PT P HRL SNFIGKL+ WKGV ISQ  RT +M  T +QAG+
Sbjct: 12 LSGGAAFPTPPCHRLRSNFIGKLSLWKGVSISQTSRTPTMTATPVQAGS 60

BLAST of Cp4.1LG15g06140 vs. NCBI nr
Match: XP_022135964.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 3.96e-08
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 13 SAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGA 60
          S GAA PT P HR GSNFIGKL+ WK VGIS I RT +M  T +QAG+
Sbjct: 13 SGGAAFPTPPAHRPGSNFIGKLSLWKRVGISHISRTPAMPATPVQAGS 60

BLAST of Cp4.1LG15g06140 vs. NCBI nr
Match: KAA0025127.1 (protein CHAPERONE-LIKE PROTEIN OF POR1 [Cucumis melo var. makuwa] >TYK19369.1 protein CHAPERONE-LIKE PROTEIN OF POR1 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.02e-07
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 12 LSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGA 60
          LS GAA PT P HRL S F+GK    KGV ISQ+F+T +M  TL+QAG+
Sbjct: 12 LSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

BLAST of Cp4.1LG15g06140 vs. NCBI nr
Match: XP_016900466.1 (PREDICTED: protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 2.55e-07
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 12 LSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGA 60
          LS GAA PT P HRL S F+GK    KGV ISQ+F+T +M  TL+QAG+
Sbjct: 12 LSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

BLAST of Cp4.1LG15g06140 vs. ExPASy TrEMBL
Match: A0A6J1C2Y7 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111007789 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.92e-08
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 13 SAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGA 60
          S GAA PT P HR GSNFIGKL+ WK VGIS I RT +M  T +QAG+
Sbjct: 13 SGGAAFPTPPAHRPGSNFIGKLSLWKRVGISHISRTPAMPATPVQAGS 60

BLAST of Cp4.1LG15g06140 vs. ExPASy TrEMBL
Match: A0A5D3D731 (Protein CHAPERONE-LIKE PROTEIN OF POR1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00230 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.77e-08
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 12 LSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGA 60
          LS GAA PT P HRL S F+GK    KGV ISQ+F+T +M  TL+QAG+
Sbjct: 12 LSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

BLAST of Cp4.1LG15g06140 vs. ExPASy TrEMBL
Match: A0A1S4DWV9 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490266 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.24e-07
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 12 LSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGA 60
          LS GAA PT P HRL S F+GK    KGV ISQ+F+T +M  TL+QAG+
Sbjct: 12 LSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

BLAST of Cp4.1LG15g06140 vs. ExPASy TrEMBL
Match: A0A1S3BIJ0 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490266 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.32e-07
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 12 LSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGA 60
          LS GAA PT P HRL S F+GK    KGV ISQ+F+T +M  TL+QAG+
Sbjct: 12 LSGGAAFPTLPAHRLVSTFLGKFTPLKGVSISQVFQTPAMTATLVQAGS 60

BLAST of Cp4.1LG15g06140 vs. ExPASy TrEMBL
Match: A0A0A0K609 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014570 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.19e-06
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 12 LSAGAASPTSPGHRLGSNFIGKLNQWKGVGISQIFRTFSMRGTLMQAGA 60
          LS GAA  T P H LGS+F+GKL   +GV IS IF+T +M  TL+QAG+
Sbjct: 24 LSGGAAFSTPPAHCLGSSFLGKLTPCEGVSISHIFQTPAMTATLVQAGS 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6572126.15.06e-2381.67hypothetical protein SDJN03_28854, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038887421.11.51e-0865.31protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Benincasa hispida][more]
XP_022135964.13.96e-0864.58protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Momordica charantia][more]
KAA0025127.12.02e-0759.18protein CHAPERONE-LIKE PROTEIN OF POR1 [Cucumis melo var. makuwa] >TYK19369.1 pr... [more]
XP_016900466.12.55e-0759.18PREDICTED: protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2... [more]
Match NameE-valueIdentityDescription
A0A6J1C2Y71.92e-0864.58protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like OS=Momordica charanti... [more]
A0A5D3D7319.77e-0859.18Protein CHAPERONE-LIKE PROTEIN OF POR1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S4DWV91.24e-0759.18protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2 OS=Cucumis... [more]
A0A1S3BIJ01.32e-0759.18protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 OS=Cucumis... [more]
A0A0A0K6091.19e-0657.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014570 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g06140.1Cp4.1LG15g06140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane