Cp4.1LG15g05730 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g05730
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionglycine-rich protein 2-like
LocationCp4.1LG15: 6646077 .. 6646643 (+)
RNA-Seq ExpressionCp4.1LG15g05730
SyntenyCp4.1LG15g05730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGAGAGGGTCAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGAGGGAGGCGAAGATCTTTTCGTTCATCAGTCCTCCATTAGATCCGACGGTTTTCGGAGCCTCGGCGTCGGTGAGGATGTTGAGTTTCTGATCGAGCCTGAAGCCGATGGCCGTTGCAAGGCCGTTGATGTCACTGGCCCTGGAGAATCTTCTGTGCAGGGAAGTCGCGGTGGTGGCGGCGGCGGCGGCGGTGAAAGGGGGGGTCGAGGTGGTGGATATGGGTTTAATGGCGGAGGCGGAGGCGGAGGCGGCCGAGGTGGGTACGGCCGTGGAGGCGGAGGGTATGGTGGAGGCTATGGAGGAGGAGGCGGCGGGGGTGGTTGTTTTAAGTGTGGTGAAACTGGGCATATGGCGAGAGACTGCTACCAGGGTGGATCTCAAGGTGGTGGAGATAGGTACGGAGGCGGTGGCGGCGGTGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGATTGTCAAAGCAGTGGCCGTTGA

mRNA sequence

ATGAGCGAGAGGGTCAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGAGGGAGGCGAAGATCTTTTCGTTCATCAGTCCTCCATTAGATCCGACGGTTTTCGGAGCCTCGGCGTCGGTGAGGATGTTGAGTTTCTGATCGAGCCTGAAGCCGATGGCCGTTGCAAGGCCGTTGATGTCACTGGCCCTGGAGAATCTTCTGTGCAGGGAAGTCGCGGTGGTGGCGGCGGCGGCGGCGGTGAAAGGGGGGGTCGAGGTGGTGGATATGGGTTTAATGGCGGAGGCGGAGGCGGAGGCGGCCGAGGTGGGTACGGCCGTGGAGGCGGAGGGTATGGTGGAGGCTATGGAGGAGGAGGCGGCGGGGGTGGTTGTTTTAAGTGTGGTGAAACTGGGCATATGGCGAGAGACTGCTACCAGGGTGGATCTCAAGGTGGTGGAGATAGGTACGGAGGCGGTGGCGGCGGTGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGATTGTCAAAGCAGTGGCCGTTGA

Coding sequence (CDS)

ATGAGCGAGAGGGTCAGTGGAAAAGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGAGGGAGGCGAAGATCTTTTCGTTCATCAGTCCTCCATTAGATCCGACGGTTTTCGGAGCCTCGGCGTCGGTGAGGATGTTGAGTTTCTGATCGAGCCTGAAGCCGATGGCCGTTGCAAGGCCGTTGATGTCACTGGCCCTGGAGAATCTTCTGTGCAGGGAAGTCGCGGTGGTGGCGGCGGCGGCGGCGGTGAAAGGGGGGGTCGAGGTGGTGGATATGGGTTTAATGGCGGAGGCGGAGGCGGAGGCGGCCGAGGTGGGTACGGCCGTGGAGGCGGAGGGTATGGTGGAGGCTATGGAGGAGGAGGCGGCGGGGGTGGTTGTTTTAAGTGTGGTGAAACTGGGCATATGGCGAGAGACTGCTACCAGGGTGGATCTCAAGGTGGTGGAGATAGGTACGGAGGCGGTGGCGGCGGTGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGATTGTCAAAGCAGTGGCCGTTGA

Protein sequence

MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYGGGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGNCYSCGESGHFARDCQSSGR
Homology
BLAST of Cp4.1LG15g05730 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-47
Identity = 137/209 (65.55%), Postives = 150/209 (71.77%), Query Frame = 0

Query: 3   ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
           +R  G VKWFSDQKG+GFI+P++GGEDLFVHQS IRS+GFRSL  GE VEF +E   DGR
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 63  CKAVDVTGPGESSVQGSRGGGGGGGGE-------------RGGRGGGYGFNGGGGGGGGR 122
            KAVDVTGP  ++VQG RGGGGGGGG               GGRGG  G+ GG GG GG 
Sbjct: 67  TKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGG 126

Query: 123 GG------YGRGGGGY--GGGYGGG--GGGGGCFKCGETGHMARDCYQGGSQGGGDRYGG 182
           GG      YG GGGGY  GGGYGGG  GGG GCFKCGE+GH ARDC Q G  GGG R+GG
Sbjct: 127 GGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFGG 186

Query: 183 GGGGGGGGGNCYSCGESGHFARDCQSSGR 189
           GGGGGGGGG CY CGE GHFAR+C S GR
Sbjct: 187 GGGGGGGGG-CYKCGEDGHFARECTSGGR 214

BLAST of Cp4.1LG15g05730 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-39
Identity = 124/202 (61.39%), Postives = 140/202 (69.31%), Query Frame = 0

Query: 3   ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
           ER  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E + + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 63  CKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYGGG 122
            KA+DV+GP  + VQG+ GGG  GG  RGG GG     G GGG G  GGYG GGGGYGG 
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGG--RGGFGG-----GRGGGRGSGGGYGGGGGGYGGR 128

Query: 123 YGGGGGGGGCFKCGETGHMARDCYQ--------GGSQGGGDRYGGGG--------GGGGG 182
            GGG GG  C+KCGE GHMARDC +        GG  GGG  YGGGG        GGGGG
Sbjct: 129 GGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGG 188

Query: 183 GGNCYSCGESGHFARDCQSSGR 189
           GG+CYSCGESGHFARDC S GR
Sbjct: 189 GGSCYSCGESGHFARDCTSGGR 203

BLAST of Cp4.1LG15g05730 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 124/192 (64.58%), Postives = 140/192 (72.92%), Query Frame = 0

Query: 3   ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
           +R  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E +  GR
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 63  CKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYG-G 122
            KA++V+GP  + VQG+ GGGG  GG RGG GGG    GG GGG G G YG G GG G G
Sbjct: 73  PKAIEVSGPDGAPVQGNSGGGGSSGG-RGGFGGG----GGRGGGRGGGSYGGGYGGRGSG 132

Query: 123 GYGGGGGGGGCFKCGETGHMARDCYQGG----SQGGGDRYGGGGGGGGGGG--NCYSCGE 182
           G GGGGG   CFKCGE GHMAR+C QGG      GGG RYG GGGGGGGGG  +CYSCGE
Sbjct: 133 GRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGE 192

Query: 183 SGHFARDCQSSG 188
           SGHFARDC S G
Sbjct: 193 SGHFARDCTSGG 199

BLAST of Cp4.1LG15g05730 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.5e-26
Identity = 114/209 (54.55%), Postives = 133/209 (63.64%), Query Frame = 0

Query: 4   RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRC 63
           R  GKV WFSD KGYGFI+P++GGE+LFVHQSSI SDGFRSL +GE VE+ I   +DG+ 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGESSV----QGSRGGGGG--GGGERG-------GRGGGYGFNGGGG---GGG 123
           KA++VT PG  S+      SRG GG     GE G       G  GG  F GGGG   GG 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129

Query: 124 GR-------GGYGRGGGGYGGGYGGGGGGGG--CFKCGETGHMARDCYQGGSQGGGDRYG 183
           G        G + R     GGG  GGGGGGG  C+ CGE GH+A+DC +GGS  GG+RYG
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC-RGGS--GGNRYG 189

Query: 184 GGGGGGGGGGNCYSCGESGHFARDCQSSG 188
           GGGG G GG  CY CG  GHFARDC+ +G
Sbjct: 190 GGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

BLAST of Cp4.1LG15g05730 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.7e-18
Identity = 101/208 (48.56%), Postives = 123/208 (59.13%), Query Frame = 0

Query: 4   RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRC 63
           R +GKV WF+  KGYGFI+P++G  +LFVHQSSI S+G+RSL VG+ VEF I   +DG+ 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGESSVQ--------GSRGGGGGGG----GERGGRGGGYGFNGGGGGG----- 123
           KAV+VT PG  S++        G+R GGGG G    GE G      G  GGGGGG     
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 GGRGGYGRGGGGY--------GGGYGGG---GGGGGCFKCGETGHMARDCYQGGSQGGGD 183
           GG G Y  G  G+        G G   G   GG  GC+ CG+ GH+ARDC Q  S G GD
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQ-KSVGNGD 189

BLAST of Cp4.1LG15g05730 vs. NCBI nr
Match: XP_023554277.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328 bits (841), Expect = 1.68e-112
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0

Query: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
           MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYG 120
           GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYG
Sbjct: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYG 120

Query: 121 GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGNCYSCGESGHFA 180
           GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGNCYSCGESGHFA
Sbjct: 121 GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGNCYSCGESGHFA 180

Query: 181 RDCQSSGR 188
           RDCQSSGR
Sbjct: 181 RDCQSSGR 188

BLAST of Cp4.1LG15g05730 vs. NCBI nr
Match: XP_022969511.1 (glycine-rich protein 2-like [Cucurbita maxima])

HSP 1 Score: 315 bits (806), Expect = 3.50e-107
Identity = 185/189 (97.88%), Postives = 185/189 (97.88%), Query Frame = 0

Query: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
           MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYG 120
           GRCKAVDVTGPGESSVQGSRGGGGGG  ERG RGGGYGFNGGGGGGGGRGGYGRGGGGYG
Sbjct: 61  GRCKAVDVTGPGESSVQGSRGGGGGG--ERGSRGGGYGFNGGGGGGGGRGGYGRGGGGYG 120

Query: 121 GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGG-NCYSCGESGHF 180
           GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGG NCYSCGESGHF
Sbjct: 121 GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGGNCYSCGESGHF 180

Query: 181 ARDCQSSGR 188
           ARDCQSSGR
Sbjct: 181 ARDCQSSGR 187

BLAST of Cp4.1LG15g05730 vs. NCBI nr
Match: KAG6572104.1 (Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 308 bits (789), Expect = 5.08e-104
Identity = 183/189 (96.83%), Postives = 183/189 (96.83%), Query Frame = 0

Query: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
           MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD
Sbjct: 41  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 100

Query: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYG 120
           GRCKAVDVTGPGESSVQGSRGGGGGGGGERG RGGGYGFNGGGGGG  RGGYGRGGGGYG
Sbjct: 101 GRCKAVDVTGPGESSVQGSRGGGGGGGGERGSRGGGYGFNGGGGGG--RGGYGRGGGGYG 160

Query: 121 GGYGGGGGGGG-CFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGNCYSCGESGHF 180
           GGYGGGGGGGG CFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGG  NCYSCGESGHF
Sbjct: 161 GGYGGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGG--NCYSCGESGHF 220

Query: 181 ARDCQSSGR 188
           ARDCQSSGR
Sbjct: 221 ARDCQSSGR 225

BLAST of Cp4.1LG15g05730 vs. NCBI nr
Match: XP_022952475.1 (glycine-rich protein 2-like [Cucurbita moschata])

HSP 1 Score: 302 bits (774), Expect = 2.06e-102
Identity = 178/188 (94.68%), Postives = 179/188 (95.21%), Query Frame = 0

Query: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
           MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYG 120
           GRCKA+DVTGPGESSVQGSRGGGGGGGGERG RGGGYGFNGGGGGG  RGGYGRGGGGY 
Sbjct: 61  GRCKAIDVTGPGESSVQGSRGGGGGGGGERGSRGGGYGFNGGGGGG--RGGYGRGGGGY- 120

Query: 121 GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGNCYSCGESGHFA 180
              GGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGG  NCYSCGESGHFA
Sbjct: 121 ---GGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGG--NCYSCGESGHFA 180

Query: 181 RDCQSSGR 188
           RDCQSSGR
Sbjct: 181 RDCQSSGR 180

BLAST of Cp4.1LG15g05730 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus])

HSP 1 Score: 266 bits (679), Expect = 1.80e-87
Identity = 173/213 (81.22%), Postives = 177/213 (83.10%), Query Frame = 0

Query: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRG--------------------GGYGFN 120
           GR KAVDVTGPGE+SVQGSRGGGGGGGG  GG G                    GGYGFN
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGGGGGGGRGGYGRGGGGYGGG-YGGGGGGGG---CFKCGETGHMARDCYQGGSQGGG-D 180
           GG GGGG RGGYG GGGGYGGG YGGGGGGGG   CFKCGETGHMARDCYQ GSQGGG D
Sbjct: 121 GGSGGGG-RGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGD 180

Query: 181 RYGGGGGGGGGGGNCYSCGESGHFARDCQSSGR 188
           RYGGGGGGGGGGGNCYSCGESGHFAR+C SSGR
Sbjct: 181 RYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

BLAST of Cp4.1LG15g05730 vs. ExPASy TrEMBL
Match: A0A6J1HY03 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468487 PE=4 SV=1)

HSP 1 Score: 315 bits (806), Expect = 1.69e-107
Identity = 185/189 (97.88%), Postives = 185/189 (97.88%), Query Frame = 0

Query: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
           MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYG 120
           GRCKAVDVTGPGESSVQGSRGGGGGG  ERG RGGGYGFNGGGGGGGGRGGYGRGGGGYG
Sbjct: 61  GRCKAVDVTGPGESSVQGSRGGGGGG--ERGSRGGGYGFNGGGGGGGGRGGYGRGGGGYG 120

Query: 121 GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGG-NCYSCGESGHF 180
           GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGG NCYSCGESGHF
Sbjct: 121 GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGGNCYSCGESGHF 180

Query: 181 ARDCQSSGR 188
           ARDCQSSGR
Sbjct: 181 ARDCQSSGR 187

BLAST of Cp4.1LG15g05730 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 302 bits (774), Expect = 1.00e-102
Identity = 178/188 (94.68%), Postives = 179/188 (95.21%), Query Frame = 0

Query: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
           MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYG 120
           GRCKA+DVTGPGESSVQGSRGGGGGGGGERG RGGGYGFNGGGGGG  RGGYGRGGGGY 
Sbjct: 61  GRCKAIDVTGPGESSVQGSRGGGGGGGGERGSRGGGYGFNGGGGGG--RGGYGRGGGGY- 120

Query: 121 GGYGGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGGGNCYSCGESGHFA 180
              GGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGG  NCYSCGESGHFA
Sbjct: 121 ---GGGGGGGGCFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGG--NCYSCGESGHFA 180

Query: 181 RDCQSSGR 188
           RDCQSSGR
Sbjct: 181 RDCQSSGR 180

BLAST of Cp4.1LG15g05730 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 266 bits (679), Expect = 8.74e-88
Identity = 173/213 (81.22%), Postives = 177/213 (83.10%), Query Frame = 0

Query: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRG--------------------GGYGFN 120
           GR KAVDVTGPGE+SVQGSRGGGGGGGG  GG G                    GGYGFN
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFN 120

Query: 121 GGGGGGGGRGGYGRGGGGYGGG-YGGGGGGGG---CFKCGETGHMARDCYQGGSQGGG-D 180
           GG GGGG RGGYG GGGGYGGG YGGGGGGGG   CFKCGETGHMARDCYQ GSQGGG D
Sbjct: 121 GGSGGGG-RGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGD 180

Query: 181 RYGGGGGGGGGGGNCYSCGESGHFARDCQSSGR 188
           RYGGGGGGGGGGGNCYSCGESGHFAR+C SSGR
Sbjct: 181 RYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

BLAST of Cp4.1LG15g05730 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 260 bits (664), Expect = 1.41e-85
Identity = 171/208 (82.21%), Postives = 173/208 (83.17%), Query Frame = 0

Query: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
           M ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRS+GFRSLGVGEDVEF IE EAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGG--------------YGFNGGGGGG 120
           GR KAVDVTGPGESSVQGSRGGGGGGGG  GG GGG              YGFNGG GGG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 GGRGGYG-RGGGGYGGGYGGGGGGGG---CFKCGETGHMARDCYQGGSQGGGDRY--GGG 180
           G RG YG  GGGGYGGGYG GGGGGG   CFKCGE GHMARDCYQ GSQGGGDRY  GGG
Sbjct: 121 G-RGLYGGSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGG 180

Query: 181 GGGGGGGGNCYSCGESGHFARDCQSSGR 188
           GGGGGGGGNCYSCGESGHFAR+C SSGR
Sbjct: 181 GGGGGGGGNCYSCGESGHFARECPSSGR 207

BLAST of Cp4.1LG15g05730 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 257 bits (657), Expect = 1.39e-84
Identity = 168/205 (81.95%), Postives = 170/205 (82.93%), Query Frame = 0

Query: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
           M ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRS+GFRSLGVGEDVEF IE EAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRCKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGG--------------YGFNGGGGGG 120
           GR KAVDVTGPGESSVQGSRGGGGGGGG  GG GGG              YGFNGG GGG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGG 120

Query: 121 GGRGGYG-RGGGGYGGGYGGGGGGGG--CFKCGETGHMARDCYQGGSQGGGDRYGGGGGG 180
           G RG YG  GGGGYGGGYG GGGGGG  CFKCGE GHMARDCYQ GSQGGGDRY GGGGG
Sbjct: 121 G-RGSYGGSGGGGYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGGG 180

Query: 181 GGGGGNCYSCGESGHFARDCQSSGR 188
           GGG  NCYSCGESGHFAR+C SSGR
Sbjct: 181 GGG--NCYSCGESGHFARECPSSGR 202

BLAST of Cp4.1LG15g05730 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 164.5 bits (415), Expect = 8.4e-41
Identity = 124/202 (61.39%), Postives = 140/202 (69.31%), Query Frame = 0

Query: 3   ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
           ER  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E + + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 63  CKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYGGG 122
            KA+DV+GP  + VQG+ GGG  GG  RGG GG     G GGG G  GGYG GGGGYGG 
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGG--RGGFGG-----GRGGGRGSGGGYGGGGGGYGGR 128

Query: 123 YGGGGGGGGCFKCGETGHMARDCYQ--------GGSQGGGDRYGGGG--------GGGGG 182
            GGG GG  C+KCGE GHMARDC +        GG  GGG  YGGGG        GGGGG
Sbjct: 129 GGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGG 188

Query: 183 GGNCYSCGESGHFARDCQSSGR 189
           GG+CYSCGESGHFARDC S GR
Sbjct: 189 GGSCYSCGESGHFARDCTSGGR 203

BLAST of Cp4.1LG15g05730 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 161.4 bits (407), Expect = 7.1e-40
Identity = 124/192 (64.58%), Postives = 140/192 (72.92%), Query Frame = 0

Query: 3   ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
           +R  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E +  GR
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 63  CKAVDVTGPGESSVQGSRGGGGGGGGERGGRGGGYGFNGGGGGGGGRGGYGRGGGGYG-G 122
            KA++V+GP  + VQG+ GGGG  GG RGG GGG    GG GGG G G YG G GG G G
Sbjct: 73  PKAIEVSGPDGAPVQGNSGGGGSSGG-RGGFGGG----GGRGGGRGGGSYGGGYGGRGSG 132

Query: 123 GYGGGGGGGGCFKCGETGHMARDCYQGG----SQGGGDRYGGGGGGGGGGG--NCYSCGE 182
           G GGGGG   CFKCGE GHMAR+C QGG      GGG RYG GGGGGGGGG  +CYSCGE
Sbjct: 133 GRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGE 192

Query: 183 SGHFARDCQSSG 188
           SGHFARDC S G
Sbjct: 193 SGHFARDCTSGG 199

BLAST of Cp4.1LG15g05730 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-27
Identity = 114/209 (54.55%), Postives = 133/209 (63.64%), Query Frame = 0

Query: 4   RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRC 63
           R  GKV WFSD KGYGFI+P++GGE+LFVHQSSI SDGFRSL +GE VE+ I   +DG+ 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGESSV----QGSRGGGGG--GGGERG-------GRGGGYGFNGGGG---GGG 123
           KA++VT PG  S+      SRG GG     GE G       G  GG  F GGGG   GG 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129

Query: 124 GR-------GGYGRGGGGYGGGYGGGGGGGG--CFKCGETGHMARDCYQGGSQGGGDRYG 183
           G        G + R     GGG  GGGGGGG  C+ CGE GH+A+DC +GGS  GG+RYG
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC-RGGS--GGNRYG 189

Query: 184 GGGGGGGGGGNCYSCGESGHFARDCQSSG 188
           GGGG G GG  CY CG  GHFARDC+ +G
Sbjct: 190 GGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

BLAST of Cp4.1LG15g05730 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 92.4 bits (228), Expect = 4.1e-19
Identity = 101/208 (48.56%), Postives = 123/208 (59.13%), Query Frame = 0

Query: 4   RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRC 63
           R +GKV WF+  KGYGFI+P++G  +LFVHQSSI S+G+RSL VG+ VEF I   +DG+ 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGESSVQ--------GSRGGGGGGG----GERGGRGGGYGFNGGGGGG----- 123
           KAV+VT PG  S++        G+R GGGG G    GE G      G  GGGGGG     
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 GGRGGYGRGGGGY--------GGGYGGG---GGGGGCFKCGETGHMARDCYQGGSQGGGD 183
           GG G Y  G  G+        G G   G   GG  GC+ CG+ GH+ARDC Q  S G GD
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQ-KSVGNGD 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P274841.5e-4765.55Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1[more]
Q411881.2e-3961.39Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1[more]
Q388961.0e-3864.58Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P... [more]
Q94C697.5e-2654.55Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P... [more]
O656395.7e-1848.56Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_023554277.11.68e-112100.00glycine-rich protein 2-like [Cucurbita pepo subsp. pepo][more]
XP_022969511.13.50e-10797.88glycine-rich protein 2-like [Cucurbita maxima][more]
KAG6572104.15.08e-10496.83Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. s... [more]
XP_022952475.12.06e-10294.68glycine-rich protein 2-like [Cucurbita moschata][more]
XP_011658593.11.80e-8781.22glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_02... [more]
Match NameE-valueIdentityDescription
A0A6J1HY031.69e-10797.88glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468487 PE=4 SV=... [more]
A0A6J1GLV71.00e-10294.68glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S... [more]
A0A0A0K4M58.74e-8881.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1[more]
A0A6J1JLC01.41e-8582.21glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=... [more]
A0A6J1ERG91.39e-8481.95glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT4G38680.18.4e-4161.39glycine rich protein 2 [more]
AT2G21060.17.1e-4064.58glycine-rich protein 2B [more]
AT2G17870.15.3e-2754.55cold shock domain protein 3 [more]
AT4G36020.14.1e-1948.56cold shock domain protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 7..22
score: 63.69
coord: 28..37
score: 64.04
coord: 43..61
score: 40.86
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 6..70
e-value: 4.5E-24
score: 84.1
IPR002059Cold-shock protein, DNA-bindingPROSITEPS51857CSD_2coord: 4..70
score: 31.168829
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 5..70
e-value: 1.47647E-24
score: 89.175
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 131..147
e-value: 1.9E-5
score: 34.1
coord: 169..185
e-value: 9.5E-5
score: 31.8
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 169..184
e-value: 4.9E-7
score: 29.6
coord: 131..145
e-value: 4.5E-7
score: 29.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 170..185
score: 10.95486
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 132..145
score: 11.053757
IPR011129Cold shock domainSMARTSM00357csp_8coord: 6..71
e-value: 6.5E-23
score: 92.1
NoneNo IPR availableGENE3D2.40.50.140coord: 1..81
e-value: 1.9E-27
score: 97.2
NoneNo IPR availableGENE3D4.10.60.10coord: 165..188
e-value: 3.9E-6
score: 28.4
coord: 128..156
e-value: 1.1E-6
score: 30.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..94
NoneNo IPR availablePANTHERPTHR46565COLD SHOCK DOMAIN PROTEIN 2coord: 3..185
NoneNo IPR availablePANTHERPTHR46565:SF6COLD SHOCK PROTEIN 1coord: 3..185
IPR019844Cold-shock (CSD) domainPROSITEPS00352CSD_1coord: 18..37
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 121..186
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g05730.1Cp4.1LG15g05730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding