Cp4.1LG15g04310 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g04310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionprotein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
LocationCp4.1LG15: 5438837 .. 5442617 (-)
RNA-Seq ExpressionCp4.1LG15g04310
SyntenyCp4.1LG15g04310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAACAAGAAAAGGTTCCCTTTACGTGGGAAATCCTTAACTCAATCCTCTGCGACAGTTAACCATCGCCGGGCAATACTATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTTCTCAATATCAACCGCCATTTCCAACCTCTCGAACCTGGCTTCTCTCCCATCCCTTCCAGGTTTCTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGTTCATCGGATTTCTCTTCCCATTTATTGACCTTTTTTTCGTGTGTTTTTGCTCTCAATCTGCTCGATTGTGTTCCAGGGAGTTGATAATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTGGCTCCGACTTCGACTTAATCGGTGGGGAGGAGGAGGAGGCGGAGGAGGAGGATGAGGAGGATGACGATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTAGAAGTTTATTGAGTTTGTTTAAGCTTAATCATTGACTTTTTCTTTTTCTGTACTGTTGTTGATCAATTGTGTATTAGTGATTGGTTTTTCAGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTAAATACATCGATTTCATGCGTTTTCTTTGCTATTTCCATATGGATTTGTTACCTTGGCAATGTATGGATAGTTGTAAGCTTCTCATTGCAAAAGAGAATTGTGTATTGAAATTCAACCAAAATAATGCTGCTGGAACTGTCATGACACTTTGCTTGATAAGGGTATGCGTGGCAAACCTCAGCCAAGAAAATAAATGTGAGATCCCACATTAGTTGGAGAGGGGAACGAACCATTCTTTATAAAGGTGTAGAAACCTCTTCCTAGCATATGCGTTTGAAATCGTGAGACTGACAGCGATACATAACGGGTTAAAGTGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATTAGAGCTAGTTATCGGACGTGTGCTAGTGAGGATGCTGGCCTCCAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAAACATTCTTTATTAATGTGTGGAAACCTCTCCCTAGAAGACGTGTTTTAAAATTGTGAGGCTTACGACGATATGTAACGGACCAAAATGGAAAATATCTACGGCGATACGAACGGAAATGGTATCAGAGCCAGCCACCAAGCGGTGTGCCAGTGAGGACGCTGGCCCCCCCTAGAGAGATAGGTTGTGAGATCTCACATCGGTTGGAGAGGGGAACGAAACAAGAAAACTTTTTGAAACCGGTGAGTATCTCTTAAATTAACAAAATATCGAGACTAAGTAGAAGGGCTTCATTGTAGGATTCTAGTTAGAATCTTATCATTTCTAAATCAATACAAGGTTCTCTTATTGTAATTGCCCAAGCCCACCGCTAATAGATATTGTTCTCTTTGGATTTTTCCTTTTGAAATTCCTCTCAAGGTTTTTAAAACGTGTTTGTTTGGGAGAGGTTTCCACATCCTTATAAAAAATGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCAGGGCCCAATGTCCTTGCTGGCACTCGTTCCCTTCTCCAATCGATGTGAGACCCCCCAATCCACCCCCCTTCAGGGTCCTATGTCCTTACTAGCACACTGCCTCGTGTTCACCCCCCTTCGGGGCTCAACCTCCTTGCTGGCATATCGTCTGGTGTCTAGCTTTGATACCATTTGTAACAGCCCAAGCCCACTGCTAGTAGATATTGTCCTCTTTGAACTTTTCCTTTCAGACTAGTTTTTAAAGCGCGTCTTCTAGGGAGAGGTTTCCACTAAAAATTACCATCAACCAATATGGAAACAATTTTACAAATATAAATAACAAAAACAAATATACACGTAACAACACAACCAATATTACAAAAGGCATAAAGAATGAACCAATGAACCAATATGTTATTTGCTTTATTTGCTGTCTTTTCAGAAGTAGCCAAAGGCGCTGGCCTGTTGATGTTGATTGATTATTGAGTTTACTGGTGGTTGTAGACAGTATGCGTTAAATTTCTGTTAGAGATATAGATACTTGGAGTATGTTTGTCTGTCAAAACACTATCTGTTGAACAAGTTAACCATCAGACCAAGATGTTTTACTTTTATTTACCAACACACAGAGCTCTGTTAGTAGGATATGACTATAGAGTCAATCTTGGTGATATTTGGCTTTGTTCATCATGAAAGGTACTGGTCTGTTGGTACCGATTGACTATCGAGTTTGCTGGTGTTTGTAGACAGTCGATCCTTCAAGAGACGGTCTTAAAAGGGTCTGTTCTAGGAAGAACAGAGAACTTCATACAAGTTGATACTAATTAAGATCAAAAGGAAGATACTGGAATTTCTTGAGACAGATTTGAATGAAAAGACAAATTTGTTAACGCATTCTTGTTAAGAGTCGAGAGGGGTTGATCTGAGATGGGATCTGGAGTGCATTCCTGAAACGGCCCAAGCCCATCGCTAGCAGATATTGTCCTCTTTGGACTTTTCCTTTCGGGTTTCCCCTCAAGGTTTTTAAAATGTGTCTGTTAGGGAGAGGCTTCCACACCCTTAGAAGGAATGTTTCGTTCTCCTCTTCAACCGACGTGAGATCTCACAATACACTCCCCTTAGGGGCCCAACGTCCTCGCGGGCACACTTCTCGGTGTCCGGTTCTAATACCATTTGTAACAGCCCAAGCCCACTACTAGTATATATTGTTCTTTTTGGGCGTTCCCTCAACGTTTTAAAACACATCTACAAGGGATTCCACACCCTTATAAGAAATGTTTCGTTCTCTTCTCCAACCGATATGAGAACTCACAAGAAAGAAAGAGAAGAAAAAAAAAAGAGAAAATTTGTGGAGGCAATCCCTAATTTCCAAAGTTTCCCAAAGAGGGAAAGTTCGTAAAAAATGTTAGAATACCACTTTCCCCTACCTCTCGACTCTTTTCACTAACGAACTGCCTGTGCTGCTATGCTATGTGAAATCTTAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGTTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGAACTCCTCAATCACTCAACTGCTTATAACTTGCAAGGTTAGTGATACCACCAATAGCTTAGAATAATGGGCCTTCATGTTTATCTCATTTTGATCTGTAAATTCTTGTTCTTGTTCTTGTTCTCTGTGTTTGTATAGAAAGGTGTTTTAATCCATAAGTGTTTGAAACCTTCAATCCAGTAATGGGTTATGTGTTGGTTTGGTCTCTTTTCCAAGTTTATAAACTTACTGTTGATGCACGTGTAAGGCAGGTGAATCTCCTTGCTCGGATTTGTGCATCGACGTATTTCAACAAGTTGGAAAACATTCCTTTTGATGAATTGTTCTTGTAATTCTGAATATAGTTTTGAGAATTTGAATTGATAGAGACGTATGTGTTAGACGAACACAACTCTCCACAATGGTATGATATTGTCCACTTTAAGCATAAGTTCTCATGACTTTGTTTAGGGCTTCCCCAAAAGGCCTCAA

mRNA sequence

GTAAACAAGAAAAGGTTCCCTTTACGTGGGAAATCCTTAACTCAATCCTCTGCGACAGTTAACCATCGCCGGGCAATACTATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTTCTCAATATCAACCGCCATTTCCAACCTCTCGAACCTGGCTTCTCTCCCATCCCTTCCAGGTTTCTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGGAGTTGATAATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTGGCTCCGACTTCGACTTAATCGGTGGGGAGGAGGAGGAGGCGGAGGAGGAGGATGAGGAGGATGACGATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGTTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGAACTCCTCAATCACTCAACTGCTTATAACTTGCAAGGTGAATCTCCTTGCTCGGATTTGTGCATCGACGTATTTCAACAAGTTGGAAAACATTCCTTTTGATGAATTGTTCTTGTAATTCTGAATATAGTTTTGAGAATTTGAATTGATAGAGACGTATGTGTTAGACGAACACAACTCTCCACAATGGTATGATATTGTCCACTTTAAGCATAAGTTCTCATGACTTTGTTTAGGGCTTCCCCAAAAGGCCTCAA

Coding sequence (CDS)

ATGTCCTTACTTGCCGCTCGTTCACCGCCGTCCCTCTTCGCCGTTTCTCAATATCAACCGCCATTTCCAACCTCTCGAACCTGGCTTCTCTCCCATCCCTTCCAGGTTTCTCACGCGCTCCTCCGGGCTTCCAGAAGAGCCTCCAATTTCTCTCAGGGAGTTGATAATCCGGTGGATGATCGGCGCAACTGGAACGGCTCGATTGGCTCCGACTTCGACTTAATCGGTGGGGAGGAGGAGGAGGCGGAGGAGGAGGATGAGGAGGATGACGATGAGGAAGAGGATAGAAGTTTGGATCTATTGGTTCAGTTTGTTGAGAATGTTTTCAGGAAGGTCTCGAGGCGAGCCCGGAAGGCTGTGCGATCGGTTCTTCCCCAATCCATCCCTACTAAACTGGTGGGATTTTGTGTCAATGGGGTGTTAATGCTGGCATTTTTGTGGGTTTTGAAGGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTATTTGTGAGCATACTCATCATTCGTGGCGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGGTTCGATCAACTGGATGATGATCAGCCCCATGCCTGGACTGGTGCGCAGCCCGCATCCTGA

Protein sequence

MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDDRRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLDDDQPHAWTGAQPAS
Homology
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BLAST of Cp4.1LG15g04310 vs. ExPASy Swiss-Prot
Match: F4I3V6 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.5e-16
Identity = 64/186 (34.41%), Postives = 105/186 (56.45%), Query Frame = 0 

Query: 2   SLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRR------ASNFSQGVD 61
           +L ++ S PSL  ++        S  ++   PF  +   LR   R      AS+ S    
Sbjct: 7   TLSSSSSSPSLTLIN-------ASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRR 66

Query: 62  NPVDDRRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRR 121
               D R + G  G ++D++  ++  ++++DEED   E + S+DLL++F+ ++F+KVS+R
Sbjct: 67  RYESDDRFFGG--GDNYDVVPDDDGFSDDDDEED---ERESSVDLLIRFLRSMFKKVSKR 126

Query: 122 ARKAVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWT 181
            +KA R +LP ++  +LV F V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W 
Sbjct: 127 TKKASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWA 180

[Close]
BLAST of Cp4.1LG15g04310 vs. NCBI nr
Match: XP_023553854.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo] >XP_023553855.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395 bits (1015), Expect = 1.96e-138
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 

Query: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60
           MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD
Sbjct: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120
           RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV
Sbjct: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120

Query: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180
           RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL
Sbjct: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180

Query: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206
           QDIRSHRFDQLDDDQPHAWTGAQPAS
Sbjct: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206

[Close]
BLAST of Cp4.1LG15g04310 vs. NCBI nr
Match: XP_022972529.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima] >XP_022972530.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 385 bits (990), Expect = 1.27e-134
Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0 

Query: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60
           MSLL ARSPPSLFAV QYQPPFPTSRTWLLS PFQ+SHALLRASRRASNFSQGVDNPVDD
Sbjct: 1   MSLLVARSPPSLFAVPQYQPPFPTSRTWLLSQPFQISHALLRASRRASNFSQGVDNPVDD 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120
           RRNWNGSIGSDFDLIGGEEEEAEEEDEED+D+EEDRSLDLLVQFVENVFRKVSRRARKAV
Sbjct: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDEDDEEDRSLDLLVQFVENVFRKVSRRARKAV 120

Query: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180
           RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL
Sbjct: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180

Query: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206
           QDIRSHRFDQLDDDQPHAWTGAQPAS
Sbjct: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206

[Close]
BLAST of Cp4.1LG15g04310 vs. NCBI nr
Match: KAG6571911.1 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379 bits (973), Expect = 4.97e-132
Identity = 199/206 (96.60%), Postives = 200/206 (97.09%), Query Frame = 0 

Query: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60
           MSLLAARSPPSLFAV QYQPPF TSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFLTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120
           RRNWNGSI  DFDLIGGEEEEAEEEDEED+DEEEDRSLDLLVQFVENVFRKVSRRARKAV
Sbjct: 61  RRNWNGSISHDFDLIGGEEEEAEEEDEEDEDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120

Query: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180
           RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180

Query: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206
           QDIRSHR DQLDDDQPHAWTGAQPAS
Sbjct: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 206

[Close]
BLAST of Cp4.1LG15g04310 vs. NCBI nr
Match: KAG7011594.1 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376 bits (965), Expect = 8.24e-131
Identity = 197/206 (95.63%), Postives = 199/206 (96.60%), Query Frame = 0 

Query: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60
           MSLLAARSPPSLFAV QYQPPF TSRTW+LSHPFQV HALLRASRRASNFSQGVDNPVDD
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFLTSRTWILSHPFQVFHALLRASRRASNFSQGVDNPVDD 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120
           RRNWNGSI  DFDLIGGEEEEAEEEDEED+DEEEDRSLDLLVQFVENVFRKVSRRARKAV
Sbjct: 61  RRNWNGSISHDFDLIGGEEEEAEEEDEEDEDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120

Query: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180
           RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180

Query: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206
           QDIRSHR DQLDDDQPHAWTGAQPAS
Sbjct: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 206

[Close]
BLAST of Cp4.1LG15g04310 vs. NCBI nr
Match: XP_022952196.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata])

HSP 1 Score: 375 bits (963), Expect = 1.49e-130
Identity = 198/206 (96.12%), Postives = 199/206 (96.60%), Query Frame = 0 

Query: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60
           MSLLAARSPPSLFAV QYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVD+PVDD
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120
           RRNWNGSIGSDFDLIGGEEEE EEEDE   DEEEDRSLDLLVQFVENVFRKVSRRARKAV
Sbjct: 61  RRNWNGSIGSDFDLIGGEEEEEEEEDE---DEEEDRSLDLLVQFVENVFRKVSRRARKAV 120

Query: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180
           RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180

Query: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206
           QDIRSHR DQLDDDQPHAWTGAQPAS
Sbjct: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 203

[Close]
BLAST of Cp4.1LG15g04310 vs. ExPASy TrEMBL
Match: A0A6J1I8W5 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111471074 PE=4 SV=1)

HSP 1 Score: 385 bits (990), Expect = 6.16e-135
Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0 

Query: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60
           MSLL ARSPPSLFAV QYQPPFPTSRTWLLS PFQ+SHALLRASRRASNFSQGVDNPVDD
Sbjct: 1   MSLLVARSPPSLFAVPQYQPPFPTSRTWLLSQPFQISHALLRASRRASNFSQGVDNPVDD 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120
           RRNWNGSIGSDFDLIGGEEEEAEEEDEED+D+EEDRSLDLLVQFVENVFRKVSRRARKAV
Sbjct: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDEDDEEDRSLDLLVQFVENVFRKVSRRARKAV 120

Query: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180
           RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL
Sbjct: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180

Query: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206
           QDIRSHRFDQLDDDQPHAWTGAQPAS
Sbjct: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206

[Close]
BLAST of Cp4.1LG15g04310 vs. ExPASy TrEMBL
Match: A0A6J1GJK6 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454943 PE=4 SV=1)

HSP 1 Score: 375 bits (963), Expect = 7.23e-131
Identity = 198/206 (96.12%), Postives = 199/206 (96.60%), Query Frame = 0 

Query: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60
           MSLLAARSPPSLFAV QYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVD+PVDD
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120
           RRNWNGSIGSDFDLIGGEEEE EEEDE   DEEEDRSLDLLVQFVENVFRKVSRRARKAV
Sbjct: 61  RRNWNGSIGSDFDLIGGEEEEEEEEDE---DEEEDRSLDLLVQFVENVFRKVSRRARKAV 120

Query: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180
           RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180

Query: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206
           QDIRSHR DQLDDDQPHAWTGAQPAS
Sbjct: 181 QDIRSHRLDQLDDDQPHAWTGAQPAS 203

[Close]
BLAST of Cp4.1LG15g04310 vs. ExPASy TrEMBL
Match: A0A6J1D3L5 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC111017292 PE=4 SV=1)

HSP 1 Score: 322 bits (824), Expect = 1.22e-109
Identity = 174/208 (83.65%), Postives = 188/208 (90.38%), Query Frame = 0 

Query: 1   MSLLAARSPPSLFAVSQY--QPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPV 60
           MS  AA SPPSLF++ QY  QP F +SRT LLSHPFQ+SH LLRASRR SNFSQGVDN V
Sbjct: 1   MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLV 60

Query: 61  DDRRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARK 120
           DDRRNWN  I SDFD++GGE++E +EEDEED  EEEDRSLDLLV+FVENVFRKVS+RARK
Sbjct: 61  DDRRNWNRPISSDFDIVGGEDDEEDEEDEED--EEEDRSLDLLVRFVENVFRKVSKRARK 120

Query: 121 AVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGIL 180
           AVRSVLPQSIPTKLVGF VNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVWTGIL
Sbjct: 121 AVRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGIL 180

Query: 181 YLQDIRSHRFDQLDDDQPHAWTGAQPAS 206
           YLQDIRSHRFDQLD++Q HAWTGAQPAS
Sbjct: 181 YLQDIRSHRFDQLDNEQHHAWTGAQPAS 206

[Close]
BLAST of Cp4.1LG15g04310 vs. ExPASy TrEMBL
Match: A0A6J1JL13 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486160 PE=4 SV=1)

HSP 1 Score: 319 bits (817), Expect = 1.28e-108
Identity = 169/206 (82.04%), Postives = 187/206 (90.78%), Query Frame = 0 

Query: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60
           MSL AA SPPSL+++   QPP PTSRT +LSH  Q+SH LLRASRR SNFSQGVD+ VDD
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120
           RRNWN SI SDFD+IGGE++E   +DE++++EEEDRSLDLLV+FVENVFRKVS+RARKAV
Sbjct: 61  RRNWNRSISSDFDIIGGEDDE---DDEDEENEEEDRSLDLLVRFVENVFRKVSKRARKAV 120

Query: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180
           RSVLPQSIPTKLVGF VNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYL
Sbjct: 121 RSVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180

Query: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206
           QDIRSHRFD+LDDDQ HAWTGAQPAS
Sbjct: 181 QDIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]
BLAST of Cp4.1LG15g04310 vs. ExPASy TrEMBL
Match: A0A1S3C0Q8 (uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=4 SV=1)

HSP 1 Score: 318 bits (815), Expect = 2.49e-108
Identity = 175/206 (84.95%), Postives = 183/206 (88.83%), Query Frame = 0 

Query: 1   MSLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDD 60
           MSL A  SPPSLF++ Q QPPFPTSRT LLSHPFQ+S+ LLRA+RR SNFSQGVDN VD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAV 120
           RRNWN S   DFDLIGGEEEE EEE EEDDDEEEDRSLDLLV+FVENVFRK SRRARKAV
Sbjct: 61  RRNWNRS---DFDLIGGEEEEEEEE-EEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAV 120

Query: 121 RSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYL 180
           RSVLPQSIPTKLV F VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYL
Sbjct: 121 RSVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYL 180

Query: 181 QDIRSHRFDQLDDDQPHAWTGAQPAS 206
           QD RSHR +Q DDDQ HAWTGAQPAS
Sbjct: 181 QDTRSHRLEQFDDDQHHAWTGAQPAS 202

[Close]
BLAST of Cp4.1LG15g04310 vs. TAIR 10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-47
Identity = 111/205 (54.15%), Postives = 144/205 (70.24%), Query Frame = 0 

Query: 2   SLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDNPVDDR 61
           S+   RSP S F  +     F  +RT +   P+        ASRR+ +F  G D+  DD 
Sbjct: 13  SVALLRSPLSFFIFTPKTLIF--TRTRISGFPY-------LASRRSRDFINGRDDFADDT 72

Query: 62  RNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRRARKAVR 121
           R+WN  I  ++    G +E+ + E+++DD EEEDRSLDLL++FVENVFRK+S+RARKAVR
Sbjct: 73  RSWNRKIKPEY----GFDEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRARKAVR 132

Query: 122 SVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 181
           S+LP SI TKLVGF VNGVL+LAFLW+LKAFLEV CTLGT VF SIL+IRG+W G+ Y+Q
Sbjct: 133 SILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAGVAYMQ 192

Query: 182 DIRSHRFDQLDDDQPHAWTGAQPAS 207
           + R++R ++L DD P AW G QP S
Sbjct: 193 ESRNNRINELADD-PRAWNGMQPVS 203

[Close]
BLAST of Cp4.1LG15g04310 vs. TAIR 10
Match: AT1G69935.1 (short hypocotyl in white light1 )

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-17
Identity = 64/186 (34.41%), Postives = 105/186 (56.45%), Query Frame = 0 

Query: 2   SLLAARSPPSLFAVSQYQPPFPTSRTWLLSHPFQVSHALLRASRR------ASNFSQGVD 61
           +L ++ S PSL  ++        S  ++   PF  +   LR   R      AS+ S    
Sbjct: 7   TLSSSSSSPSLTLIN-------ASHRFVSVTPFSSNSIFLRRRFRRLNRSLASSSSHSRR 66

Query: 62  NPVDDRRNWNGSIGSDFDLIGGEEEEAEEEDEEDDDEEEDRSLDLLVQFVENVFRKVSRR 121
               D R + G  G ++D++  ++  ++++DEED   E + S+DLL++F+ ++F+KVS+R
Sbjct: 67  RYESDDRFFGG--GDNYDVVPDDDGFSDDDDEED---ERESSVDLLIRFLRSMFKKVSKR 126

Query: 122 ARKAVRSVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWT 181
            +KA R +LP ++  +LV F V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W 
Sbjct: 127 TKKASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWA 180

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g04310 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4I3V64.5e-1634.41Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1... [more]
BLAST of Cp4.1LG15g04310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023553854.11.96e-138100.00protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita pepo subsp. pepo] >XP_0... [more]
XP_022972529.11.27e-13497.09protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima] >XP_022972530.1... [more]
KAG6571911.14.97e-13296.60Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp.... [more]
KAG7011594.18.24e-13195.63Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp.... [more]
XP_022952196.11.49e-13096.12protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197... [more]
BLAST of Cp4.1LG15g04310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I8W56.16e-13597.09protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1GJK67.23e-13196.12protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1D3L51.22e-10983.65protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1JL131.28e-10882.04protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A1S3C0Q82.49e-10884.95uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=... [more]
BLAST of Cp4.1LG15g04310 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G33780.11.3e-4754.15FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G69935.13.2e-1734.41short hypocotyl in white light1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..94
NoneNo IPR availablePANTHERPTHR35474:SF1ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNITcoord: 23..206
IPR039324Protein SHORT HYPOCOTYL IN WHITE LIGHT 1PANTHERPTHR35474ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNITcoord: 23..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g04310.1Cp4.1LG15g04310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010100 negative regulation of photomorphogenesis
biological_process GO:0009787 regulation of abscisic acid-activated signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016757 glycosyltransferase activity