Cp4.1LG15g04020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g04020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionMFS domain-containing protein
LocationCp4.1LG15: 5188239 .. 5188868 (+)
RNA-Seq ExpressionCp4.1LG15g04020
SyntenyCp4.1LG15g04020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTATAGCCTACTTCTATCTGACATGACATTAGTAAAGACATAGTGATCCATATTCATCTCAGGATAAAAAGGAGATCGACCTTCCGGAGTATAAAGACCAGCCAATTATAAACTTCACTACGGAGTCAAATTAAGAAAGTTAGAATGTCATGTAATTTTGTATGCATAGTGTAAGGATTGACCAAACCCAAAAGCCTAAGCTAATGTGTTAGTCTATATTTAATATTTTTGTATCTATTCTTTAGCTAATTACTTCTCTTGTTGCAGAGGGTCCGATAAACTTCGTGTGCCTACATTGCATGATGACTAGTCTAAGGCCGCTTTCTATAGCTATGTTCACAGTCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGTAAACTTCGTGTGTCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGGTTAGTTGTTTAGAAGTTAAGTCTATTCTATATATTTTTAGTTAAAAGTTTTAA

mRNA sequence

ATGAATCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGTTTTAA

Coding sequence (CDS)

ATGAATCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGTTTTAA

Protein sequence

MNRNSHLPINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVEF
Homology
BLAST of Cp4.1LG15g04020 vs. ExPASy Swiss-Prot
Match: F4IKF6 (Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At2g22730 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-11
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+A+STVAIH               IFGDVPSSPLVG+V+
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIH---------------IFGDVPSSPLVGIVQ 451

BLAST of Cp4.1LG15g04020 vs. ExPASy Swiss-Prot
Match: Q9FLG8 (Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g64500 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-09
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NF+ LHCV PSLRPL++AMSTV+IH               IFGDVPSSPLVGV++
Sbjct: 385 PVNFIVLHCVKPSLRPLAMAMSTVSIH---------------IFGDVPSSPLVGVLQ 426

BLAST of Cp4.1LG15g04020 vs. ExPASy Swiss-Prot
Match: Q6NMN6 (Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g65687 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.1e-08
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NFVCLHCV P+LRPLS+A STV IH               I GDVPSSPL G ++
Sbjct: 391 PVNFVCLHCVRPNLRPLSMASSTVLIH---------------ILGDVPSSPLYGKMQ 432

BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: KAG7011576.1 (putative sphingolipid transporter spinster-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.7 bits (195), Expect = 2.21e-17
Identity = 45/61 (73.77%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 4  NSHLPINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVV 63
          NSHLPINFVCLHCVTPSL               RPLSMSMSTIAIQIFGDVPSS LVGVV
Sbjct: 50 NSHLPINFVCLHCVTPSL---------------RPLSMSMSTIAIQIFGDVPSSNLVGVV 95

BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: KAG6571891.1 (putative sphingolipid transporter spinster-like 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 1.36e-14
Identity = 44/61 (72.13%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 4   NSHLPINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVV 63
           N HLPINFVCLHCVTPSL               RPLSMSMSTIAIQIFGDVPSS LVGVV
Sbjct: 240 NLHLPINFVCLHCVTPSL---------------RPLSMSMSTIAIQIFGDVPSSNLVGVV 285

BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: XP_023511602.1 (probable sphingolipid transporter spinster homolog 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 7.70e-13
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 64
           P+NFVCLHCVTPSLRPLS+AMSTVAIHI               FGDVPSSPLVGV+E
Sbjct: 391 PVNFVCLHCVTPSLRPLSMAMSTVAIHI---------------FGDVPSSPLVGVLE 432

BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: PKI46557.1 (hypothetical protein CRG98_033048, partial [Punica granatum])

HSP 1 Score: 67.8 bits (164), Expect = 1.25e-12
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 8  PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 64
          P+NFVCLHCV PSLRPLS+AMSTV+IHI               FGDVPSSPLVGV++
Sbjct: 2  PVNFVCLHCVKPSLRPLSMAMSTVSIHI---------------FGDVPSSPLVGVLQ 43

BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: KAG7011577.1 (putative sphingolipid transporter spinster-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 1.97e-12
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 64
           P+NFVCLHCVTP+LRPLS+AMSTVAIHI               FGDVPSSPLVGV+E
Sbjct: 387 PVNFVCLHCVTPNLRPLSMAMSTVAIHI---------------FGDVPSSPLVGVLE 428

BLAST of Cp4.1LG15g04020 vs. ExPASy TrEMBL
Match: A0A5K1C7N3 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS17947 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.06e-13
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 8  PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 64
          P+N+VCLHCV PSLRPLS+AMSTV+IHI               FGDVPSSPLVGV++
Sbjct: 2  PVNYVCLHCVKPSLRPLSMAMSTVSIHI---------------FGDVPSSPLVGVLQ 43

BLAST of Cp4.1LG15g04020 vs. ExPASy TrEMBL
Match: A0A2I0IRD0 (Uncharacterized protein (Fragment) OS=Punica granatum OX=22663 GN=CRG98_033048 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.07e-13
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 8  PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 64
          P+NFVCLHCV PSLRPLS+AMSTV+IHI               FGDVPSSPLVGV++
Sbjct: 2  PVNFVCLHCVKPSLRPLSMAMSTVSIHI---------------FGDVPSSPLVGVLQ 43

BLAST of Cp4.1LG15g04020 vs. ExPASy TrEMBL
Match: A0A6J1GM96 (probable sphingolipid transporter spinster homolog 2 OS=Cucurbita moschata OX=3662 GN=LOC111455558 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.53e-13
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 64
           P+NFVCLHCVTP+LRPLS+AMSTVAIHI               FGDVPSSPLVGV+E
Sbjct: 392 PVNFVCLHCVTPNLRPLSMAMSTVAIHI---------------FGDVPSSPLVGVLE 433

BLAST of Cp4.1LG15g04020 vs. ExPASy TrEMBL
Match: A0A1J3JKC6 (Putative sphingolipid transporter spinster-like protein 3 (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR6604_c2_g1_i1_g.19390 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.41e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 8  PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 64
          P+N+VCLHCV PSLRPLS+A+STVAIHI               FGDVPSSPLVG+V+
Sbjct: 22 PVNYVCLHCVKPSLRPLSMAISTVAIHI---------------FGDVPSSPLVGIVQ 63

BLAST of Cp4.1LG15g04020 vs. ExPASy TrEMBL
Match: A0A2K3KH89 (Protein spinster 1-like (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g054646 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.86e-12
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 64
           P+N+VCLHCV PSLRPLS+ MSTVAIH+               FGDVPSSPLVGV+E
Sbjct: 66  PVNYVCLHCVKPSLRPLSMVMSTVAIHV---------------FGDVPSSPLVGVLE 107

BLAST of Cp4.1LG15g04020 vs. TAIR 10
Match: AT2G22730.1 (Major facilitator superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+N+VCLHCV PSLRPLS+A+STVAIH               IFGDVPSSPLVG+V+
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIH---------------IFGDVPSSPLVGIVQ 451

BLAST of Cp4.1LG15g04020 vs. TAIR 10
Match: AT5G64500.1 (Major facilitator superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-10
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NF+ LHCV PSLRPL++AMSTV+IH               IFGDVPSSPLVGV++
Sbjct: 385 PVNFIVLHCVKPSLRPLAMAMSTVSIH---------------IFGDVPSSPLVGVLQ 426

BLAST of Cp4.1LG15g04020 vs. TAIR 10
Match: AT5G65687.1 (Major facilitator superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-09
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 8   PINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVE 65
           P+NFVCLHCV P+LRPLS+A STV IH               I GDVPSSPL G ++
Sbjct: 391 PVNFVCLHCVRPNLRPLSMASSTVLIH---------------ILGDVPSSPLYGKMQ 432

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
F4IKF66.8e-1161.40Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana OX=... [more]
Q9FLG81.7e-0957.89Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana OX=... [more]
Q6NMN67.1e-0854.39Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana OX=... [more]
Match NameE-valueIdentityDescription
KAG7011576.12.21e-1773.77putative sphingolipid transporter spinster-like 3, partial [Cucurbita argyrosper... [more]
KAG6571891.11.36e-1472.13putative sphingolipid transporter spinster-like 3, partial [Cucurbita argyrosper... [more]
XP_023511602.17.70e-1368.42probable sphingolipid transporter spinster homolog 2 [Cucurbita pepo subsp. pepo... [more]
PKI46557.11.25e-1263.16hypothetical protein CRG98_033048, partial [Punica granatum][more]
KAG7011577.11.97e-1266.67putative sphingolipid transporter spinster-like 3, partial [Cucurbita argyrosper... [more]
Match NameE-valueIdentityDescription
A0A5K1C7N33.06e-1361.40Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS17... [more]
A0A2I0IRD06.07e-1363.16Uncharacterized protein (Fragment) OS=Punica granatum OX=22663 GN=CRG98_033048 P... [more]
A0A6J1GM969.53e-1366.67probable sphingolipid transporter spinster homolog 2 OS=Cucurbita moschata OX=36... [more]
A0A1J3JKC61.41e-1261.40Putative sphingolipid transporter spinster-like protein 3 (Fragment) OS=Noccaea ... [more]
A0A2K3KH891.86e-1261.40Protein spinster 1-like (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g05464... [more]
Match NameE-valueIdentityDescription
AT2G22730.14.8e-1261.40Major facilitator superfamily protein [more]
AT5G64500.11.2e-1057.89Major facilitator superfamily protein [more]
AT5G65687.15.0e-0954.39Major facilitator superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23505:SF53MAJOR FACILITATOR SUPERFAMILY-RELATEDcoord: 6..35
NoneNo IPR availablePANTHERPTHR23505SPINSTERcoord: 37..63
NoneNo IPR availablePANTHERPTHR23505:SF53MAJOR FACILITATOR SUPERFAMILY-RELATEDcoord: 37..63
NoneNo IPR availablePANTHERPTHR23505SPINSTERcoord: 6..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g04020.1Cp4.1LG15g04020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane