Cp4.1LG15g04020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGTTATAGCCTACTTCTATCTGACATGACATTAGTAAAGACATAGTGATCCATATTCATCTCAGGATAAAAAGGAGATCGACCTTCCGGAGTATAAAGACCAGCCAATTATAAACTTCACTACGGAGTCAAATTAAGAAAGTTAGAATGTCATGTAATTTTGTATGCATAGTGTAAGGATTGACCAAACCCAAAAGCCTAAGCTAATGTGTTAGTCTATATTTAATATTTTTGTATCTATTCTTTAGCTAATTACTTCTCTTGTTGCAGAGGGTCCGATAAACTTCGTGTGCCTACATTGCATGATGACTAGTCTAAGGCCGCTTTCTATAGCTATGTTCACAGTCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGTAAACTTCGTGTGTCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGGTTAGTTGTTTAGAAGTTAAGTCTATTCTATATATTTTTAGTTAAAAGTTTTAA ATGAATCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGTTTTAA ATGAATCGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGGCCGCTTTCTATGTCTATGTCGACAATTGCAATTCAAATTTTTGGAGATGTGCCATCTTCGCCTCTGGTTGGAGTTGTCGAGTTTTAA MNRNSHLPINFVCLHCVTPSLRPLSIAMSTVAIHISRPLSMSMSTIAIQIFGDVPSSPLVGVVEF Homology
BLAST of Cp4.1LG15g04020 vs. ExPASy Swiss-Prot
Match: F4IKF6 (Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At2g22730 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 6.8e-11 Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. ExPASy Swiss-Prot
Match: Q9FLG8 (Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g64500 PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.7e-09 Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. ExPASy Swiss-Prot
Match: Q6NMN6 (Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g65687 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 7.1e-08 Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: KAG7011576.1 (putative sphingolipid transporter spinster-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 79.7 bits (195), Expect = 2.21e-17 Identity = 45/61 (73.77%), Postives = 45/61 (73.77%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: KAG6571891.1 (putative sphingolipid transporter spinster-like 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 77.4 bits (189), Expect = 1.36e-14 Identity = 44/61 (72.13%), Postives = 44/61 (72.13%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: XP_023511602.1 (probable sphingolipid transporter spinster homolog 2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 72.4 bits (176), Expect = 7.70e-13 Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: PKI46557.1 (hypothetical protein CRG98_033048, partial [Punica granatum]) HSP 1 Score: 67.8 bits (164), Expect = 1.25e-12 Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. NCBI nr
Match: KAG7011577.1 (putative sphingolipid transporter spinster-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 71.2 bits (173), Expect = 1.97e-12 Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. ExPASy TrEMBL
Match: A0A5K1C7N3 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS17947 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 3.06e-13 Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. ExPASy TrEMBL
Match: A0A2I0IRD0 (Uncharacterized protein (Fragment) OS=Punica granatum OX=22663 GN=CRG98_033048 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 6.07e-13 Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. ExPASy TrEMBL
Match: A0A6J1GM96 (probable sphingolipid transporter spinster homolog 2 OS=Cucurbita moschata OX=3662 GN=LOC111455558 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 9.53e-13 Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. ExPASy TrEMBL
Match: A0A1J3JKC6 (Putative sphingolipid transporter spinster-like protein 3 (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR6604_c2_g1_i1_g.19390 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.41e-12 Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. ExPASy TrEMBL
Match: A0A2K3KH89 (Protein spinster 1-like (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g054646 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.86e-12 Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. TAIR 10
Match: AT2G22730.1 (Major facilitator superfamily protein ) HSP 1 Score: 67.4 bits (163), Expect = 4.8e-12 Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. TAIR 10
Match: AT5G64500.1 (Major facilitator superfamily protein ) HSP 1 Score: 62.8 bits (151), Expect = 1.2e-10 Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of Cp4.1LG15g04020 vs. TAIR 10
Match: AT5G65687.1 (Major facilitator superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 5.0e-09 Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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