Cp4.1LG15g03760 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g03760
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG15: 4946412 .. 4946699 (-)
RNA-Seq ExpressionCp4.1LG15g03760
SyntenyCp4.1LG15g03760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGTCTTCCAATTCTCATTGCTTGTGTTGCAACATTGCTTCTTTCAAGCTTCACTTCGCCGTGTTCTTCGTGTTCTTCGTCTTCCATTGTCGTATCTCGCAAGCTTTTGGCCTTAGAGATGCCTGATATGAAGGTGCCTCCTGTTTCCCCTGGGTTCAGCTTGCCTCCTCCATTTAGCTTCTTTGGCCCCAACACTCCCTCCTCCTTCCCCAACATTCCCTCCTCCTTCCCCAACTTGCCCTTCTTCTTTCCACCCACTAATCCTTCCCCTCCACCTAACTAA

mRNA sequence

ATGGCTCGTCTTCCAATTCTCATTGCTTGTGTTGCAACATTGCTTCTTTCAAGCTTCACTTCGCCGTGTTCTTCGTGTTCTTCGTCTTCCATTGTCGTATCTCGCAAGCTTTTGGCCTTAGAGATGCCTGATATGAAGGTGCCTCCTGTTTCCCCTGGGTTCAGCTTGCCTCCTCCATTTAGCTTCTTTGGCCCCAACACTCCCTCCTCCTTCCCCAACATTCCCTCCTCCTTCCCCAACTTGCCCTTCTTCTTTCCACCCACTAATCCTTCCCCTCCACCTAACTAA

Coding sequence (CDS)

ATGGCTCGTCTTCCAATTCTCATTGCTTGTGTTGCAACATTGCTTCTTTCAAGCTTCACTTCGCCGTGTTCTTCGTGTTCTTCGTCTTCCATTGTCGTATCTCGCAAGCTTTTGGCCTTAGAGATGCCTGATATGAAGGTGCCTCCTGTTTCCCCTGGGTTCAGCTTGCCTCCTCCATTTAGCTTCTTTGGCCCCAACACTCCCTCCTCCTTCCCCAACATTCCCTCCTCCTTCCCCAACTTGCCCTTCTTCTTTCCACCCACTAATCCTTCCCCTCCACCTAACTAA

Protein sequence

MARLPILIACVATLLLSSFTSPCSSCSSSSIVVSRKLLALEMPDMKVPPVSPGFSLPPPFSFFGPNTPSSFPNIPSSFPNLPFFFPPTNPSPPPN
Homology
BLAST of Cp4.1LG15g03760 vs. NCBI nr
Match: KAG6571864.1 (hypothetical protein SDJN03_28592, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170 bits (431), Expect = 5.77e-53
Identity = 91/96 (94.79%), Postives = 92/96 (95.83%), Query Frame = 0

Query: 1  MARLPILIACVATLLLSSFTSPCSSCSSSSIVVSRKLLALEMPDMKVPPVSPGFSLPPPF 60
          MARLPILIACVATL LSSFTS CSSCSSSS+VVSRKLLALEMPDMKVPPVSPGFSLPPPF
Sbjct: 1  MARLPILIACVATLFLSSFTSSCSSCSSSSLVVSRKLLALEMPDMKVPPVSPGFSLPPPF 60

Query: 61 SFFGPNTPSS-FPNIPSSFPNLPFFFPPTNPSPPPN 95
          SFFGPNTPSS FPNIPSSFPN PFFFPPTNPSPPPN
Sbjct: 61 SFFGPNTPSSSFPNIPSSFPNFPFFFPPTNPSPPPN 96

BLAST of Cp4.1LG15g03760 vs. NCBI nr
Match: KGN43761.1 (hypothetical protein Csa_017175 [Cucumis sativus])

HSP 1 Score: 100 bits (249), Expect = 2.44e-25
Identity = 64/95 (67.37%), Postives = 69/95 (72.63%), Query Frame = 0

Query: 1  MARLPILIACVATLLLSSFTSPCSSCSSSSIVVSRKLLALE---MPDMKVPPVSPGFSLP 60
          MAR  +LIA VATLLLSS +S  SS SSSSI+VSRKLLA +   +PD  VPP  P F LP
Sbjct: 1  MARFTLLIAFVATLLLSSLSS--SSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLP 60

Query: 61 PPFSFFGPNTPSSFPNIPSSFPNLPFFFPPTNPSP 92
          PPFSFFGPNTPSS       FPN PFF PPTNPSP
Sbjct: 61 PPFSFFGPNTPSSI------FPNFPFFSPPTNPSP 87

BLAST of Cp4.1LG15g03760 vs. ExPASy TrEMBL
Match: A0A0A0K7G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066190 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 1.18e-25
Identity = 64/95 (67.37%), Postives = 69/95 (72.63%), Query Frame = 0

Query: 1  MARLPILIACVATLLLSSFTSPCSSCSSSSIVVSRKLLALE---MPDMKVPPVSPGFSLP 60
          MAR  +LIA VATLLLSS +S  SS SSSSI+VSRKLLA +   +PD  VPP  P F LP
Sbjct: 1  MARFTLLIAFVATLLLSSLSS--SSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLP 60

Query: 61 PPFSFFGPNTPSSFPNIPSSFPNLPFFFPPTNPSP 92
          PPFSFFGPNTPSS       FPN PFF PPTNPSP
Sbjct: 61 PPFSFFGPNTPSSI------FPNFPFFSPPTNPSP 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571864.15.77e-5394.79hypothetical protein SDJN03_28592, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN43761.12.44e-2567.37hypothetical protein Csa_017175 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0K7G81.18e-2567.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066190 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g03760.1Cp4.1LG15g03760.1mRNA