Cp4.1LG15g02940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g02940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L37a
Location	Cp4.1LG15: 3698357 .. 3700744 (+)
RNA-Seq Expression	Cp4.1LG15g02940
Synteny	Cp4.1LG15g02940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATTGACCCGGTCTTTTCGATTCTTATGTGAAGGAACAAAATTGTTTTCTAGGGTTCCTCTCTGGTTCAAGTTCTTCCCACTTTCACCAAATCTTCTCCCGGAGATATTGTGGTCGGCCGAGCGGAAATGGTAATTTCTCTCCCTTCGAAAAAGAGATTGCGTATTTTGGTTTGATTTTATCTTTCACCACCGTGCTGAACTCCAATGGGTTGTTATTATCTGTTAGCATGTTAATTGTCACGACTATCCGATAGATTTCATGAATGATGCTCCATGAAGGGATTAAGTGTTTTTCAATGCAATTAGCTTGAATCCAAAGTTTGGGAGTAGTTGATATGGTTCTATGGAAACTGCCATGGTTTCAGTAGGAACTGTGCTGCTTGCTTTGTTTTTTAGATTTTTCTTCGTGCTTTGTTACGCTGTTCATATACACCTTTACGCATTTCTTGATACTTCGAGATCCGAATTATGTATTGAAAGTGAAATGCTTAACTTTCTTTTGTGAGAATTGAATATTTCATTCATATTTCATTCGATGTGAAAAGTTTTAAACTGATGTCTTTGTTTTTTACACAGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTAAATATTTAATAATTTCGATTTATGATTTATAATTTATTAGCTTGGGCGTACATAACTATTTTTCTTTGAGAATGCTTGTTTTTGTATTAACGTATTCAATTATCTTACGTCTGATTCTGCCTTAGGTTCTATGTTCCCATCCATAGAATGTCCAATGAGTTGCTTGATTCGTAAGAAAACTATCCTAGTATCCTATCTGAGCTGTACTTTTACCTGGTTTCTCATCTTAGAGAAGTCATGGACGACCTTTAAAGATTTAGTAATAAGTTTCTATAATTATTAGGATCAAAGAGAGAATTTTCCTCTGTAGAAGTCAAAACCTTATAAAGAATTTCCCTGTCCGGGAATTGATTGAATATAAAATGGCACTGTTAATTGATTGTTGTCGTAGTAAGATTCAGTGTTTTCTTTTTAAGAAAAACTTGTGGCAAGGAGCGCTCCTGGGCACAAGGTCCAGCTCGAGCGCCTTGCATCTAGGAAGGGGTGGCCAAGGCGCATGCCAGGCGCTCGCTTAACATGCCTCCAGTGATTCTTTAATTTTTCTTAACCTCTTAACTCTAAGTGCAGCATTAGGGATTATTATTGTAAAAATAACAATGATATTTTCTATTTTAACCCTAAATTCAACGTTTAGGTTTTTGCCTTAATAAAAAAAATGGATTTCCCTTCGATCTTACTTCTTCTTCTTCTTCTTCTTCACATGTTCATCTTTATATGTTTTTGTGTTAAAATCTCATCTTTATATGTTTCTTAATGTGTGTATATATATGTATCTATATATTTTATGTTCTTTTATACATCGTGTGCTTCGCCAAAGAAAGCCCGTGTCTTTTTTTGCGCTTTATGCATAAGCCCGCACCATAGTGTGTCTTGGGTTTAAAAAAACACCAGTAAGATTTCCTTAAAATGTTATGCGCAATGTGGGACAATATACATCAATATCATCAGCAAACCTTATTGCTTGATTTATGAATATATCTCTGCACAGTATCACGATTATAACTGCAGACCTGTGTATATGATATCTGGCTCACCTCTTTGCATGGAGGATTTTCGTTTTCCATTTTCTTCTTCTTCTCTTAACTTTGGCTGATAACAGGTACCCGATATGGTGCCAGTCTGAGAAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTTTGTGAGTTCTGTGGAAAGGCAAGTAGTTGTGCTCCTTTTTTGCCCAAGTTTTTCATTTCCAAGTCACTTAGTCTTCATGTTCCAATTATATGCTTCCCCATTGCAGTATGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAGGCCGGAGGTGCCTACACTCTTAAGTAAGGATCTTACTTCTTTTTGTTCTTGTTTGTTCTTTTTTAATTTCCTTTACAGTTTTTGTTGTTTAAATGTATTTGATTTTGATGTTATGTTTGGTACCTTTGACAGCACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAAACTGAAAGCTAAGCCATCTTCACTGCGTATTTGATCTTTTTTTTTTCTAAAAGGAAAAAGAATGCGCCCTCATTAAACTTATTATCTTCATATCAATGTTGTAGGAATTGGTTATTTTAAGTTAATTGAAAATGATCCTTTTCTTCATTTCTTGTAATAGATTCTATTGATCGTGAATTGAGTTTTACTCGAGTAACGTGTTTGGTGGCGAAAGTTGATATTGATCAAATGACTTGTTTGCTATTGT

mRNA sequence

CGATTGACCCGGTCTTTTCGATTCTTATGTGAAGGAACAAAATTGTTTTCTAGGGTTCCTCTCTGGTTCAAGTTCTTCCCACTTTCACCAAATCTTCTCCCGGAGATATTGTGGTCGGCCGAGCGGAAATGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGGTGCCAGTCTGAGAAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTTTTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAGGCCGGAGGTGCCTACACTCTTAACACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAAACTGAAAGCTAAGCCATCTTCACTGCGTATTTGATCTTTTTTTTTTCTAAAAGGAAAAAGAATGCGCCCTCATTAAACTTATTATCTTCATATCAATGTTGTAGGAATTGGTTATTTTAAGTTAATTGAAAATGATCCTTTTCTTCATTTCTTGTAATAGATTCTATTGATCGTGAATTGAGTTTTACTCGAGTAACGTGTTTGGTGGCGAAAGTTGATATTGATCAAATGACTTGTTTGCTATTGT

Coding sequence (CDS)

ATGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGGTGCCAGTCTGAGAAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTTTTTAAGAGGAAGGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAGGCCGGAGGTGCCTACACTCTTAACACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAAACTGAAAGCTAA

Protein sequence

MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFFKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Homology

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BLAST of Cp4.1LG15g02940 vs. ExPASy Swiss-Prot
Match: P0DKK1 (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.2e-37
Identity = 81/92 (88.04%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 85
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of Cp4.1LG15g02940 vs. ExPASy Swiss-Prot
Match: P0DKK2 (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.2e-37
Identity = 81/92 (88.04%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 85
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of Cp4.1LG15g02940 vs. ExPASy Swiss-Prot
Match: Q9XHE4 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.4e-37
Identity = 82/92 (89.13%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF         KRKAVGIWGCK C
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKAC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 85
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. ExPASy Swiss-Prot
Match: Q9ZRS8 (60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-36
Identity = 80/91 (87.91%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+F         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 84
          GKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 61 GKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91

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BLAST of Cp4.1LG15g02940 vs. ExPASy Swiss-Prot
Match: Q9SRK6 (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-35
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYF         KRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 85
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. NCBI nr
Match: XP_016445344.1 (PREDICTED: 60S ribosomal protein L37a-like [Nicotiana tabacum])

HSP 1 Score: 158 bits (400), Expect = 1.73e-48
Identity = 83/92 (90.22%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFF--------KRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF+        KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFYEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 84
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. NCBI nr
Match: XP_002282974.1 (PREDICTED: 60S ribosomal protein L37a [Vitis vinifera] >XP_004133971.1 60S ribosomal protein L37a [Cucumis sativus] >XP_004148368.1 60S ribosomal protein L37a [Cucumis sativus] >XP_004244552.1 60S ribosomal protein L37a [Solanum lycopersicum] >XP_004245836.1 60S ribosomal protein L37a [Solanum lycopersicum] >XP_004245837.1 60S ribosomal protein L37a [Solanum lycopersicum] >XP_004248984.1 60S ribosomal protein L37a [Solanum lycopersicum] >XP_006345354.1 PREDICTED: 60S ribosomal protein L37a [Solanum tuberosum] >XP_006354681.2 PREDICTED: 60S ribosomal protein L37a [Solanum tuberosum] >XP_006362483.1 PREDICTED: 60S ribosomal protein L37a [Solanum tuberosum] >XP_006440143.1 60S ribosomal protein L37a [Citrus clementina] >XP_006445466.1 60S ribosomal protein L37a [Citrus clementina] >XP_006477063.1 60S ribosomal protein L37a [Citrus sinensis] >XP_007039638.1 PREDICTED: 60S ribosomal protein L37a isoform X2 [Theobroma cacao] >XP_007052397.1 PREDICTED: 60S ribosomal protein L37a isoform X2 [Theobroma cacao] >XP_007218651.1 60S ribosomal protein L37a [Prunus persica] >XP_008229490.1 PREDICTED: 60S ribosomal protein L37a [Prunus mume] >XP_008232335.1 PREDICTED: 60S ribosomal protein L37a [Prunus mume] >XP_008355544.1 60S ribosomal protein L37a [Malus domestica] >XP_008373627.1 60S ribosomal protein L37a [Malus domestica] >XP_008382254.1 60S ribosomal protein L37a [Malus domestica] >XP_008389115.1 60S ribosomal protein L37a [Malus domestica] >XP_008438301.1 PREDICTED: 60S ribosomal protein L37a [Cucumis melo] >XP_008457163.1 PREDICTED: 60S ribosomal protein L37a [Cucumis melo] >XP_008465908.1 PREDICTED: 60S ribosomal protein L37a [Cucumis melo] >XP_009371855.1 PREDICTED: 60S ribosomal protein L37a [Pyrus x bretschneideri] >XP_009375382.1 PREDICTED: 60S ribosomal protein L37a [Pyrus x bretschneideri] >XP_009378386.1 PREDICTED: 60S ribosomal protein L37a [Pyrus x bretschneideri] >XP_009593570.1 60S ribosomal protein L37a [Nicotiana tomentosiformis] >XP_009597850.1 60S ribosomal protein L37a [Nicotiana tomentosiformis] >XP_009600968.1 60S ribosomal protein L37a [Nicotiana tomentosiformis] >XP_009601940.1 60S ribosomal protein L37a [Nicotiana tomentosiformis] >XP_009607073.1 60S ribosomal protein L37a [Nicotiana tomentosiformis] >XP_009791162.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana sylvestris] >XP_009792526.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana sylvestris] >XP_009796147.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana sylvestris] >XP_009796644.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana sylvestris] >XP_009797153.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana sylvestris] >XP_011649070.1 60S ribosomal protein L37a [Cucumis sativus] >XP_012075395.1 60S ribosomal protein L37a [Jatropha curcas] >XP_012439403.1 PREDICTED: 60S ribosomal protein L37a [Gossypium raimondii] >XP_012439404.1 PREDICTED: 60S ribosomal protein L37a [Gossypium raimondii] >XP_012475378.1 PREDICTED: 60S ribosomal protein L37a [Gossypium raimondii] >XP_012475789.1 PREDICTED: 60S ribosomal protein L37a isoform X2 [Gossypium raimondii] >XP_012486779.1 PREDICTED: 60S ribosomal protein L37a [Gossypium raimondii] >XP_015083230.1 60S ribosomal protein L37a [Solanum pennellii] >XP_015085596.1 60S ribosomal protein L37a [Solanum pennellii] >XP_015085598.1 60S ribosomal protein L37a [Solanum pennellii] >XP_015169494.1 PREDICTED: 60S ribosomal protein L37a [Solanum tuberosum] >XP_016435128.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016440705.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016443665.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016447895.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016459874.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016464635.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016482299.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016486270.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016495148.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana tabacum] >XP_016544343.1 PREDICTED: 60S ribosomal protein L37a [Capsicum annuum] >XP_016570820.1 PREDICTED: 60S ribosomal protein L37a [Capsicum annuum] >XP_016665842.1 60S ribosomal protein L37a isoform X2 [Gossypium hirsutum] >XP_016670633.2 60S ribosomal protein L37a [Gossypium hirsutum] >XP_016677215.1 60S ribosomal protein L37a [Gossypium hirsutum] >XP_016681999.1 60S ribosomal protein L37a isoform X2 [Gossypium hirsutum] >XP_016716653.1 60S ribosomal protein L37a [Gossypium hirsutum] >XP_016736628.1 60S ribosomal protein L37a [Gossypium hirsutum] >XP_016736629.1 60S ribosomal protein L37a [Gossypium hirsutum] >XP_017611253.1 PREDICTED: 60S ribosomal protein L37a [Gossypium arboreum] >XP_017626460.1 PREDICTED: 60S ribosomal protein L37a [Gossypium arboreum] >XP_017634972.1 PREDICTED: 60S ribosomal protein L37a [Gossypium arboreum] >XP_019159486.1 PREDICTED: 60S ribosomal protein L37a isoform X1 [Ipomoea nil] >XP_019168278.1 PREDICTED: 60S ribosomal protein L37a [Ipomoea nil] >XP_019188287.1 PREDICTED: 60S ribosomal protein L37a [Ipomoea nil] >XP_019190693.1 PREDICTED: 60S ribosomal protein L37a [Ipomoea nil] >XP_019236663.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana attenuata] >XP_019239719.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana attenuata] >XP_019244840.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana attenuata] >XP_019259287.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana attenuata] >XP_019264119.1 PREDICTED: 60S ribosomal protein L37a [Nicotiana attenuata] >XP_020419225.1 60S ribosomal protein L37a [Prunus persica] >XP_021280730.1 60S ribosomal protein L37a isoform X2 [Herrania umbratica] >XP_021283132.1 60S ribosomal protein L37a [Herrania umbratica] >XP_021811295.1 60S ribosomal protein L37a [Prunus avium] >XP_021822793.1 60S ribosomal protein L37a [Prunus avium] >XP_021911807.1 60S ribosomal protein L37a [Carica papaya] >XP_022147039.1 60S ribosomal protein L37a [Momordica charantia] >XP_022155750.1 60S ribosomal protein L37a [Momordica charantia] >XP_022718295.1 60S ribosomal protein L37a isoform X2 [Durio zibethinus] >XP_022736973.1 60S ribosomal protein L37a isoform X2 [Durio zibethinus] >XP_022756879.1 60S ribosomal protein L37a [Durio zibethinus] >XP_022757947.1 60S ribosomal protein L37a [Durio zibethinus] >XP_022770148.1 60S ribosomal protein L37a [Durio zibethinus] >XP_022924256.1 60S ribosomal protein L37a [Cucurbita moschata] >XP_022931770.1 60S ribosomal protein L37a [Cucurbita moschata] >XP_022943009.1 60S ribosomal protein L37a [Cucurbita moschata] >XP_022958815.1 60S ribosomal protein L37a [Cucurbita moschata] >XP_022964442.1 60S ribosomal protein L37a [Cucurbita moschata] >XP_022973248.1 60S ribosomal protein L37a [Cucurbita maxima] >XP_022980454.1 60S ribosomal protein L37a [Cucurbita maxima] >XP_023000583.1 60S ribosomal protein L37a [Cucurbita maxima] >XP_023005985.1 60S ribosomal protein L37a [Cucurbita maxima] >XP_023513686.1 60S ribosomal protein L37a [Cucurbita pepo subsp. pepo] >XP_023527833.1 60S ribosomal protein L37a [Cucurbita pepo subsp. pepo] >XP_023538970.1 60S ribosomal protein L37a [Cucurbita pepo subsp. pepo] >XP_023547599.1 60S ribosomal protein L37a [Cucurbita pepo subsp. pepo] >XP_023553922.1 60S ribosomal protein L37a [Cucurbita pepo subsp. pepo] >XP_023758919.1 60S ribosomal protein L37a [Lactuca sativa] >XP_023762965.1 60S ribosomal protein L37a [Lactuca sativa] >XP_024193137.1 60S ribosomal protein L37a [Rosa chinensis] >XP_024961425.1 60S ribosomal protein L37a [Cynara cardunculus var. scolymus] >XP_024985841.1 60S ribosomal protein L37a [Cynara cardunculus var. scolymus] >XP_024994562.1 60S ribosomal protein L37a [Cynara cardunculus var. scolymus] >XP_028083840.1 60S ribosomal protein L37a [Camellia sinensis] >XP_028092020.1 60S ribosomal protein L37a [Camellia sinensis] >XP_030494579.1 60S ribosomal protein L37a [Cannabis sativa] >XP_030500698.1 60S ribosomal protein L37a [Cannabis sativa] >XP_031092108.1 60S ribosomal protein L37a [Ipomoea triloba] >XP_031097850.1 60S ribosomal protein L37a [Ipomoea triloba] >XP_031111303.1 60S ribosomal protein L37a [Ipomoea triloba] >XP_031127208.1 60S ribosomal protein L37a [Ipomoea triloba] >XP_031259510.1 60S ribosomal protein L37a isoform X2 [Pistacia vera] >XP_031277584.1 60S ribosomal protein L37a [Pistacia vera] >XP_034204370.1 60S ribosomal protein L37a [Prunus dulcis] >XP_034215281.1 60S ribosomal protein L37a [Prunus dulcis] >XP_034701638.1 60S ribosomal protein L37a [Vitis riparia] >XP_034708385.1 60S ribosomal protein L37a [Vitis riparia] >XP_038887517.1 60S ribosomal protein L37a [Benincasa hispida] >XP_038900283.1 60S ribosomal protein L37a [Benincasa hispida] >XP_038906728.1 60S ribosomal protein L37a [Benincasa hispida] >XP_042494879.1 60S ribosomal protein L37a [Macadamia integrifolia] >KAA0039616.1 60s ribosomal protein l37a [Cucumis melo var. makuwa] >KAA8522119.1 hypothetical protein F0562_012567 [Nyssa sinensis] >KAB2000539.1 hypothetical protein ES319_D12G238900v1 [Gossypium barbadense] >KAB2595249.1 hypothetical protein D8674_030699 [Pyrus ussuriensis x Pyrus communis] >KAF5188493.1 60S ribosomal protein L37a [Thalictrum thalictroides] >KAF7828500.1 60S ribosomal protein L37a [Senna tora] >KAG5588965.1 hypothetical protein H5410_039479 [Solanum commersonii] >KAG6574833.1 60S ribosomal protein L37a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018886.1 60S ribosomal protein L37a [Cucurbita argyrosperma subsp. argyrosperma] >KAG8486406.1 hypothetical protein CXB51_019918 [Gossypium anomalum] >MTV28927.1 50S ribosomal protein L37Ae [Nitriliruptoraceae bacterium ZYF776] >OMO69695.1 Ribosomal protein L37ae [Corchorus capsularis] >OMP00783.1 Ribosomal protein L37ae [Corchorus olitorius] >PAL78965.1 50S ribosomal protein L37ae [Acinetobacter baumannii] >PON33144.1 Ribosomal protein [Parasponia andersonii] >PON99780.1 Ribosomal protein [Trema orientale] >PQM34207.1 hypothetical protein Pyn_12883 [Prunus yedoensis var. nudiflora] >PWA36555.1 hypothetical protein CTI12_AA598620 [Artemisia annua] >TMW84679.1 hypothetical protein EJD97_024652 [Solanum chilense] >TQD70118.1 hypothetical protein C1H46_044347 [Malus baccata] >TYG42390.1 hypothetical protein ES288_D12G252600v1 [Gossypium darwinii] >TYH40535.1 hypothetical protein ES332_D12G253600v1 [Gossypium tomentosum] >TYI52376.1 hypothetical protein E1A91_D12G243800v1 [Gossypium mustelinum] >CAB4269415.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 157 bits (396), Expect = 7.07e-48
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 84
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. NCBI nr
Match: XP_015056098.1 (60S ribosomal protein L37a-like [Solanum pennellii])

HSP 1 Score: 157 bits (396), Expect = 7.07e-48
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKHAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 84
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. NCBI nr
Match: XP_018854860.1 (60S ribosomal protein L37a-1 [Juglans regia] >XP_040989511.1 60S ribosomal protein L37a-1 [Juglans microcarpa x Juglans regia] >XP_040993506.1 60S ribosomal protein L37a-1 [Juglans microcarpa x Juglans regia] >XP_042952801.1 60S ribosomal protein L37a-1 [Carya illinoinensis] >XP_042954464.1 60S ribosomal protein L37a-1 [Carya illinoinensis] >XP_042958767.1 60S ribosomal protein L37a-1 [Carya illinoinensis] >KAG2669113.1 hypothetical protein I3760_14G019800 [Carya illinoinensis] >KAG2672061.1 hypothetical protein I3760_13G021300 [Carya illinoinensis] >KAG2676509.1 hypothetical protein I3760_12G055700 [Carya illinoinensis] >KAG6628503.1 hypothetical protein CIPAW_14G017700 [Carya illinoinensis] >KAG6630505.1 hypothetical protein CIPAW_13G022900 [Carya illinoinensis])

HSP 1 Score: 157 bits (396), Expect = 7.07e-48
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 84
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. NCBI nr
Match: XP_026424143.1 (60S ribosomal protein L37a isoform X2 [Papaver somniferum] >XP_026432177.1 60S ribosomal protein L37a isoform X2 [Papaver somniferum] >XP_026441364.1 60S ribosomal protein L37a isoform X2 [Papaver somniferum] >RZC91508.1 hypothetical protein C5167_027572 [Papaver somniferum])

HSP 1 Score: 156 bits (395), Expect = 1.00e-47
Identity = 82/92 (89.13%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKME+SQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEISQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 84
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. ExPASy TrEMBL
Match: A0A1S3XZR6 (60S ribosomal protein L37a-like OS=Nicotiana tabacum OX=4097 GN=LOC107770536 PE=3 SV=1)

HSP 1 Score: 158 bits (400), Expect = 8.40e-49
Identity = 83/92 (90.22%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFF--------KRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF+        KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFYEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 84
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. ExPASy TrEMBL
Match: A0A1U7XSD1 (60S ribosomal protein L37a OS=Nicotiana sylvestris OX=4096 GN=LOC104239566 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 3.42e-48
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 84
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. ExPASy TrEMBL
Match: A0A6J1ICH2 (60S ribosomal protein L37a OS=Cucurbita maxima OX=3661 GN=LOC111471808 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 3.42e-48
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 84
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. ExPASy TrEMBL
Match: K4CND1 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101251802 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 3.42e-48
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 84
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. ExPASy TrEMBL
Match: A0A1U8LTA9 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=LOC107929672 PE=3 SV=1)

HSP 1 Score: 157 bits (396), Expect = 3.42e-48
Identity = 83/92 (90.22%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 84
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. TAIR 10
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 150.2 bits (378), Expect = 7.4e-37
Identity = 79/92 (85.87%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYF         KRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 85
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Cp4.1LG15g02940 vs. TAIR 10
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-36
Identity = 77/91 (84.62%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYF--------FKRKAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYF         KRKAVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 84
          GKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g02940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DKK1	4.2e-37	88.04	60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g06...	[more]
P0DKK2	4.2e-37	88.04	60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g05...	[more]
Q9XHE4	9.4e-37	89.13	60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1	[more]
Q9ZRS8	3.6e-36	87.91	60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1	[more]
Q9SRK6	1.0e-35	85.87	Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB...	[more]

BLAST of Cp4.1LG15g02940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016445344.1	1.73e-48	90.22	PREDICTED: 60S ribosomal protein L37a-like [Nicotiana tabacum]	[more]
XP_002282974.1	7.07e-48	90.22	PREDICTED: 60S ribosomal protein L37a [Vitis vinifera] >XP_004133971.1 60S ribos...	[more]
XP_015056098.1	7.07e-48	90.22	60S ribosomal protein L37a-like [Solanum pennellii]	[more]
XP_018854860.1	7.07e-48	90.22	60S ribosomal protein L37a-1 [Juglans regia] >XP_040989511.1 60S ribosomal prote...	[more]
XP_026424143.1	1.00e-47	89.13	60S ribosomal protein L37a isoform X2 [Papaver somniferum] >XP_026432177.1 60S r...	[more]

BLAST of Cp4.1LG15g02940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3XZR6	8.40e-49	90.22	60S ribosomal protein L37a-like OS=Nicotiana tabacum OX=4097 GN=LOC107770536 PE=...	[more]
A0A1U7XSD1	3.42e-48	90.22	60S ribosomal protein L37a OS=Nicotiana sylvestris OX=4096 GN=LOC104239566 PE=3 ...	[more]
A0A6J1ICH2	3.42e-48	90.22	60S ribosomal protein L37a OS=Cucurbita maxima OX=3661 GN=LOC111471808 PE=3 SV=1	[more]
K4CND1	3.42e-48	90.22	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101251802 PE=3 SV=1	[more]
A0A1U8LTA9	3.42e-48	90.22	60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=LOC107929672 PE=3 SV...	[more]

BLAST of Cp4.1LG15g02940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10950.1	7.4e-37	85.87	Zinc-binding ribosomal protein family protein	[more]
AT3G60245.1	3.6e-36	84.62	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002674	Ribosomal protein L37ae	PFAM	PF01780	Ribosomal_L37ae	coord: 4..80 e-value: 9.1E-29 score: 99.4
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 1..84 e-value: 1.9E-33 score: 116.4
None	No IPR available	PANTHER	PTHR48132:SF2	60S RIBOSOMAL PROTEIN L37A-2	coord: 1..84
None	No IPR available	PANTHER	PTHR48132	ZGC:171772	coord: 1..84
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 10..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g02940.1	Cp4.1LG15g02940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome