Cp4.1LG15g02810 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g02810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionProtein ROOT PRIMORDIUM DEFECTIVE 1
LocationCp4.1LG15: 3082472 .. 3083539 (-)
RNA-Seq ExpressionCp4.1LG15g02810
SyntenyCp4.1LG15g02810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACCGAAGAGGAAAATATATTATAGAGTTGATGAACTTGACAAAGTTATGGAGTTGCAGAAAAAGCCGTCCCTTATACTGAAGCTTATAAACATTATCCAATCTCAAAAGCACAAGTTTATATTCTTGAGGGACTTGGAGAAAGAAGTGGGATTTGTCCAAAAATGGAATTTCATGGCTGTTATTGAGAAGTACTCTTCGATTTTTTATGTTGATTCTGGAAGCTGTAGAAGGCCCTATGTTAGGCTCACCAATAAAGCTGAAAAGATTGCTAGTGAAGAACATAAGGTTAAGAGTGCAATGGAACCAATTGTAGTTAAGAATTTGAGGAAGCTGTTGATGCTGTCGGTTGACTGTCGAGTACCGCTCGAAAATATAGAGTTCATCGCGTCTGAATTGGGTTTGCCTTGTGACTTCAAAACTTCATTGATTCCTGAGTACCCTGAATTCTTTTCAGTGAAGGAAGTTGATGGGAAAGCCCACCTACATTTGGAGAATTGGGATTCTTCGCTTGCAATCAGTGCTCGGGAGGAAGGTTTCGGTAGAGCCAGAGATGTGTCTTCTTGTGAGAATCGAAAAAGAGTTCGAATATCGAAGGATGGCAACTTTTCTGGTCCATTTGCATTCAAGATGTGTTTTCCTCCAGGCTTTAGGCCAAACATGAGTTACCTTGAACATCTTGAAAGGTGGCAGAAAATGGATTTTCCTTCTCCATACTTGAACGCGAGGAGATTTGACGCAGCTGATCCGAAGGCAAGAAAGAGAGTCGTTGCTGTTCTTCACGAGTTTCTAAGCTTGACAATGGAAAAAAGGATGAGATCAACACAATTGGATGCATTTCATAGGGAGTTTCTTCTTCCATCAAAACTATTGCTGTGCTTGTTAAAGCATCAAGGAATCTTCTACATCACTAATAAAGGTGCAAGGAGTACAGTACTTCTGAAAGAAGCCTATGAAGGTTCAGTTTTGAGTGATAAATGCCCCTTGCTGTTGCACTATGATAGATTCCTTTCACTCTGTGGTAGGAGGGACAAGAATTGCAATTCACCCCAGGTTCGTTTCTAG

mRNA sequence

ATGAGACCGAAGAGGAAAATATATTATAGAGTTGATGAACTTGACAAAGTTATGGAGTTGCAGAAAAAGCCGTCCCTTATACTGAAGCTTATAAACATTATCCAATCTCAAAAGCACAAGTTTATATTCTTGAGGGACTTGGAGAAAGAAGTGGGATTTGTCCAAAAATGGAATTTCATGGCTGTTATTGAGAAGTACTCTTCGATTTTTTATGTTGATTCTGGAAGCTGTAGAAGGCCCTATGTTAGGCTCACCAATAAAGCTGAAAAGATTGCTAGTGAAGAACATAAGGTTAAGAGTGCAATGGAACCAATTGTAGTTAAGAATTTGAGGAAGCTGTTGATGCTGTCGGTTGACTGTCGAGTACCGCTCGAAAATATAGAGTTCATCGCGTCTGAATTGGGTTTGCCTTGTGACTTCAAAACTTCATTGATTCCTGAGTACCCTGAATTCTTTTCAGTGAAGGAAGTTGATGGGAAAGCCCACCTACATTTGGAGAATTGGGATTCTTCGCTTGCAATCAGTGCTCGGGAGGAAGGTTTCGGTAGAGCCAGAGATGTGTCTTCTTGTGAGAATCGAAAAAGAGTTCGAATATCGAAGGATGGCAACTTTTCTGGTCCATTTGCATTCAAGATGTGTTTTCCTCCAGGCTTTAGGCCAAACATGAGTTACCTTGAACATCTTGAAAGGTGGCAGAAAATGGATTTTCCTTCTCCATACTTGAACGCGAGGAGATTTGACGCAGCTGATCCGAAGGCAAGAAAGAGAGTCGTTGCTGTTCTTCACGAGTTTCTAAGCTTGACAATGGAAAAAAGGATGAGATCAACACAATTGGATGCATTTCATAGGGAGTTTCTTCTTCCATCAAAACTATTGCTGTGCTTGTTAAAGCATCAAGGAATCTTCTACATCACTAATAAAGGTGCAAGGAGTACAGTACTTCTGAAAGAAGCCTATGAAGGTTCAGTTTTGAGTGATAAATGCCCCTTGCTGTTGCACTATGATAGATTCCTTTCACTCTGTGGTAGGAGGGACAAGAATTGCAATTCACCCCAGGTTCGTTTCTAG

Coding sequence (CDS)

ATGAGACCGAAGAGGAAAATATATTATAGAGTTGATGAACTTGACAAAGTTATGGAGTTGCAGAAAAAGCCGTCCCTTATACTGAAGCTTATAAACATTATCCAATCTCAAAAGCACAAGTTTATATTCTTGAGGGACTTGGAGAAAGAAGTGGGATTTGTCCAAAAATGGAATTTCATGGCTGTTATTGAGAAGTACTCTTCGATTTTTTATGTTGATTCTGGAAGCTGTAGAAGGCCCTATGTTAGGCTCACCAATAAAGCTGAAAAGATTGCTAGTGAAGAACATAAGGTTAAGAGTGCAATGGAACCAATTGTAGTTAAGAATTTGAGGAAGCTGTTGATGCTGTCGGTTGACTGTCGAGTACCGCTCGAAAATATAGAGTTCATCGCGTCTGAATTGGGTTTGCCTTGTGACTTCAAAACTTCATTGATTCCTGAGTACCCTGAATTCTTTTCAGTGAAGGAAGTTGATGGGAAAGCCCACCTACATTTGGAGAATTGGGATTCTTCGCTTGCAATCAGTGCTCGGGAGGAAGGTTTCGGTAGAGCCAGAGATGTGTCTTCTTGTGAGAATCGAAAAAGAGTTCGAATATCGAAGGATGGCAACTTTTCTGGTCCATTTGCATTCAAGATGTGTTTTCCTCCAGGCTTTAGGCCAAACATGAGTTACCTTGAACATCTTGAAAGGTGGCAGAAAATGGATTTTCCTTCTCCATACTTGAACGCGAGGAGATTTGACGCAGCTGATCCGAAGGCAAGAAAGAGAGTCGTTGCTGTTCTTCACGAGTTTCTAAGCTTGACAATGGAAAAAAGGATGAGATCAACACAATTGGATGCATTTCATAGGGAGTTTCTTCTTCCATCAAAACTATTGCTGTGCTTGTTAAAGCATCAAGGAATCTTCTACATCACTAATAAAGGTGCAAGGAGTACAGTACTTCTGAAAGAAGCCTATGAAGGTTCAGTTTTGAGTGATAAATGCCCCTTGCTGTTGCACTATGATAGATTCCTTTCACTCTGTGGTAGGAGGGACAAGAATTGCAATTCACCCCAGGTTCGTTTCTAG

Protein sequence

MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFMAVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDCRVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEGFGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQGIFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF
Homology
BLAST of Cp4.1LG15g02810 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-41
Identity = 106/330 (32.12%), Postives = 176/330 (53.33%), Query Frame = 0

Query: 15  DKVMELQKKPSLILKLINIIQSQKHKFIFLRDL---EKEVGFVQKWNFMAVIEKYSSIFY 74
           D V++  KK  L+LKL NI+ S   + + LRDL    +++G  +K   +A+++++  +F 
Sbjct: 70  DNVIQRDKKLKLVLKLRNILVSNPDRVMSLRDLGRFRRDLGLTRKRRLIALLKRFPGVFE 129

Query: 75  VDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDCRVPLENIEFIA 134
           V          RLT  AE++  +E  +K+  E + V  LRKLLM+S D R+ +E I  + 
Sbjct: 130 VVEEGVYSLRFRLTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLK 189

Query: 135 SELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEGFGRARDVSSCE 194
           ++LGLP +F+ ++   YP++F V ++D    L L +WD  LA+SA E        V+  E
Sbjct: 190 NDLGLPPEFRDTICLRYPQYFRVVQMDRGPGLELTHWDPELAVSAAE--------VAEEE 249

Query: 195 NRKRVRISKDGNFSGPFAF-KMCFPPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAAD 254
           NR R    ++     P  F ++  P G + +      + ++++M + SPY +     +  
Sbjct: 250 NRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGS 309

Query: 255 PKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQGIFYITNKGAR 314
            +  K    V+HE LSLT+EKR     L  F  EF     L   L++H  +FY++ KG R
Sbjct: 310 AEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDR 369

Query: 315 STVLLKEAYEGSVLSDKCPLLLHYDRFLSL 341
            +V L+EAY+ S L +K  L+L  ++  +L
Sbjct: 370 DSVFLREAYKNSQLVEKSKLVLLKEKMRAL 391

BLAST of Cp4.1LG15g02810 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.1e-41
Identity = 108/346 (31.21%), Postives = 181/346 (52.31%), Query Frame = 0

Query: 1   MRPKRKIYYRVDEL--DKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEK---EVGFVQ 60
           + P R    R  EL  D V++  KK  L+L +  I+ SQ  + + LR L K   ++G  +
Sbjct: 69  VEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKK 128

Query: 61  KWNFMAVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLM 120
           +  F+A++ KY  +F +          ++T++AE++  +E ++++ +E ++V  LRKL+M
Sbjct: 129 RRRFIALLRKYPGVFEIVEEGAYSLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVM 188

Query: 121 LSVDCRVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAIS 180
           +S+D R+ LE I  + ++LGLP +F+ ++   YP++F V        L L +WD  LA+S
Sbjct: 189 MSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVS 248

Query: 181 AREEGFGRARDVSSCENRKRVRISKDGNFSGPFAF-KMCFPPGFRPNMSYLEHLERWQKM 240
           A E        +S  +NR R    ++     P  F ++  P G   + S    + +++ M
Sbjct: 249 AAE--------LSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDM 308

Query: 241 DFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLC 300
            + SPY +     +   +  K    V+HE LSLT EKR     L  F  EF    +L   
Sbjct: 309 QYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGM 368

Query: 301 LLKHQGIFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSL 341
           L++H  +FY++ KG R +V L+EAY  S L DK PL L  ++  +L
Sbjct: 369 LIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRAL 406

BLAST of Cp4.1LG15g02810 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-38
Identity = 100/330 (30.30%), Postives = 174/330 (52.73%), Query Frame = 0

Query: 15  DKVMELQKKPSLILKLINIIQSQKHKFIFLRDL---EKEVGFVQKWNFMAVIEKYSSIFY 74
           D V++  KK  L+LKL NI+ +Q  + + LR+L    +++G  +K   +A++ ++  +F 
Sbjct: 64  DTVIQRDKKLKLVLKLRNILVAQPDRVMSLRELGRFRRDLGLTRKRRLIALLRRFPGVFD 123

Query: 75  VDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDCRVPLENIEFIA 134
           V          RLT  AE++  +E ++++  E + V  LRKLLM+S + R+ +E +  + 
Sbjct: 124 VVEEGVYSLRFRLTPAAERLYLDELRLRNESEGLAVAKLRKLLMMSQEKRILIEKVAHLK 183

Query: 135 SELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEGFGRARDVSSCE 194
            +LGLP +F+ ++   YP++F V  +D    L L +WD  LA+SA E        ++  E
Sbjct: 184 HDLGLPPEFRDTVCLRYPQYFRVVRMDRGPALELTHWDPELAVSAAE--------LAEEE 243

Query: 195 NRKRVRISKDGNFSGPFAF-KMCFPPGFRPNMSYLEHLERWQKMDFPSPYLNARRFDAAD 254
           +R R    ++     P  F ++  P G +        + R+++M + SPY +     +  
Sbjct: 244 SRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEMPYISPYADFSHLRSGS 303

Query: 255 PKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQGIFYITNKGAR 314
            +  K    V+HE LSLT+EKR     L  F  EF     L   +++H  +FY++ KG R
Sbjct: 304 DEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGMIIRHPDMFYVSFKGDR 363

Query: 315 STVLLKEAYEGSVLSDKCPLLLHYDRFLSL 341
            +V L+EAY+ S L +K  L+L  ++  +L
Sbjct: 364 DSVFLREAYKDSQLVEKNQLVLLKEKMRAL 385

BLAST of Cp4.1LG15g02810 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.0e-31
Identity = 115/354 (32.49%), Postives = 180/354 (50.85%), Query Frame = 0

Query: 3   PKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFI---FLRDLEKEVGFVQKWNF 62
           PK++   R    D  ME++KK   ++K  ++I SQ +  I    L  L + +G   K + 
Sbjct: 41  PKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHE 100

Query: 63  M-AVIEKYSSIFYVDSGSCRR-PYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLS 122
             A + K+  +F +     +R  Y RLT KA      EH+      P  V  LRKL+M+S
Sbjct: 101 PGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMS 160

Query: 123 VDCRVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGK----AHLHLENWDSSLA 182
              R+ LE++    +E GLP DF+ S+I ++P+FF +  +DG+     ++ +   D +L+
Sbjct: 161 NTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRL--IDGEETRDKYIEIVEKDPNLS 220

Query: 183 ISAREEGFGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQK 242
           I A E    R R++   E R +   ++D  FS    F + FPPGF+    +   + +WQ+
Sbjct: 221 ICAIE----RVREI---EYRTKGIDAEDVRFS----FVVNFPPGFKIGKYFRIAVWKWQR 280

Query: 243 MDFPSPYLNARRFD----AADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPS 302
           + + SPY +   +D     A  +  KR VA +HE LSLT+EK++   ++  F     LP 
Sbjct: 281 LPYWSPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPK 340

Query: 303 KLLLCLLKHQGIFYIT---NKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSL 341
           KL   LL+HQGIFYI+   N G   TV L+E Y+   L +   + L   R   L
Sbjct: 341 KLKEFLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAEL 381

BLAST of Cp4.1LG15g02810 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.3e-14
Identity = 87/349 (24.93%), Postives = 149/349 (42.69%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEV-GFVQKWNF 60
           M+ KR  Y+  D ++ ++   +  S ++ L N I  + ++ I +  + K+   F      
Sbjct: 29  MKWKRDPYF--DNIEHILRSSQLKS-VVSLKNCIVQEPNRCIPISAISKKTRQFDVSTKI 88

Query: 61  MAVIEKYSSIFYVDSG-SCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSV 120
              + K+ SIF    G     P+ RLT +A ++  +E  V       +   L+KL+++S 
Sbjct: 89  AHFLRKFPSIFEEFVGPEYNLPWFRLTPEATELDRQERVVYQTSADDLRDRLKKLILMSK 148

Query: 121 DCRVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISARE 180
           D  +PL  ++ +   LGLP D+      ++P+                N DSS      E
Sbjct: 149 DNVLPLSIVQGMKWYLGLPDDYL-----QFPDM---------------NLDSSFRFVDME 208

Query: 181 EGF-GRARDVSSCEN-----RKRVRISKDGNFS-GPFAFKMCFPPGFRPNMSYLEHLERW 240
           +G  G A D +  +      +K     + G  S     F +    G R  +   + L  +
Sbjct: 209 DGVKGLAVDYNGGDKVLSVLQKNAMKKRRGEVSLEEIEFPLFPSKGCRLRVKIEDWLMEF 268

Query: 241 QKMDFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKL 300
           QK+ + SPY +    D +   A KRVV  LHE L L +E      +L    + F LP K+
Sbjct: 269 QKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKV 328

Query: 301 LLCLLKHQGIFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSL 341
                +H  IFY++ K    T +L+E Y      +  P+L    +++ L
Sbjct: 329 HKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQL 354

BLAST of Cp4.1LG15g02810 vs. NCBI nr
Match: XP_023511734.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo] >XP_023511735.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 718 bits (1853), Expect = 1.37e-260
Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 60
           MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM
Sbjct: 37  MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 96

Query: 61  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC 120
           AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC
Sbjct: 97  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC 156

Query: 121 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 180
           RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG
Sbjct: 157 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 216

Query: 181 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 240
           FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY
Sbjct: 217 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 276

Query: 241 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 300
           LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG
Sbjct: 277 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 336

Query: 301 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF 355
           IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF
Sbjct: 337 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF 391

BLAST of Cp4.1LG15g02810 vs. NCBI nr
Match: KAG6571735.1 (Protein WHAT'S THIS FACTOR 1-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 717 bits (1850), Expect = 1.37e-260
Identity = 354/355 (99.72%), Postives = 355/355 (100.00%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 60
           MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM
Sbjct: 9   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 68

Query: 61  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC 120
           AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPI+VKNLRKLLMLSVDC
Sbjct: 69  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPILVKNLRKLLMLSVDC 128

Query: 121 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 180
           RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG
Sbjct: 129 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 188

Query: 181 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 240
           FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY
Sbjct: 189 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 248

Query: 241 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 300
           LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG
Sbjct: 249 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 308

Query: 301 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF 355
           IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF
Sbjct: 309 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF 363

BLAST of Cp4.1LG15g02810 vs. NCBI nr
Match: XP_022932961.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata] >XP_022932962.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata] >XP_022932963.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata])

HSP 1 Score: 713 bits (1841), Expect = 9.25e-259
Identity = 353/355 (99.44%), Postives = 353/355 (99.44%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 60
           MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFI LRDLEKEVGFVQKWNFM
Sbjct: 37  MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFISLRDLEKEVGFVQKWNFM 96

Query: 61  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC 120
           AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC
Sbjct: 97  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC 156

Query: 121 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 180
           RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG
Sbjct: 157 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 216

Query: 181 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 240
           FGR RDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY
Sbjct: 217 FGRGRDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 276

Query: 241 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 300
           LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG
Sbjct: 277 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 336

Query: 301 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF 355
           IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF
Sbjct: 337 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF 391

BLAST of Cp4.1LG15g02810 vs. NCBI nr
Match: XP_022973877.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima] >XP_022973878.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima])

HSP 1 Score: 711 bits (1835), Expect = 7.59e-258
Identity = 350/355 (98.59%), Postives = 355/355 (100.00%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 60
           MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM
Sbjct: 37  MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 96

Query: 61  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC 120
           AVIE+YSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKS+MEPI+VKNLRKLLMLSVDC
Sbjct: 97  AVIERYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSSMEPILVKNLRKLLMLSVDC 156

Query: 121 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 180
           RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG
Sbjct: 157 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 216

Query: 181 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 240
           FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY
Sbjct: 217 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 276

Query: 241 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 300
           LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG
Sbjct: 277 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 336

Query: 301 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF 355
           IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLH+DRFLSLCGRRDK+CNSPQVRF
Sbjct: 337 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHFDRFLSLCGRRDKHCNSPQVRF 391

BLAST of Cp4.1LG15g02810 vs. NCBI nr
Match: KAG7011461.1 (Protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 711 bits (1836), Expect = 7.06e-256
Identity = 351/353 (99.43%), Postives = 353/353 (100.00%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 60
           MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM
Sbjct: 70  MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 129

Query: 61  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC 120
           AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPI+VKNLRKLLMLSVDC
Sbjct: 130 AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPILVKNLRKLLMLSVDC 189

Query: 121 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 180
           RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG
Sbjct: 190 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 249

Query: 181 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 240
           FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY
Sbjct: 250 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 309

Query: 241 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 300
           LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG
Sbjct: 310 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 369

Query: 301 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQV 353
           IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQ+
Sbjct: 370 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQL 422

BLAST of Cp4.1LG15g02810 vs. ExPASy TrEMBL
Match: A0A6J1F3A5 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111439572 PE=4 SV=1)

HSP 1 Score: 713 bits (1841), Expect = 4.48e-259
Identity = 353/355 (99.44%), Postives = 353/355 (99.44%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 60
           MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFI LRDLEKEVGFVQKWNFM
Sbjct: 37  MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFISLRDLEKEVGFVQKWNFM 96

Query: 61  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC 120
           AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC
Sbjct: 97  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC 156

Query: 121 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 180
           RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG
Sbjct: 157 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 216

Query: 181 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 240
           FGR RDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY
Sbjct: 217 FGRGRDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 276

Query: 241 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 300
           LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG
Sbjct: 277 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 336

Query: 301 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF 355
           IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF
Sbjct: 337 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF 391

BLAST of Cp4.1LG15g02810 vs. ExPASy TrEMBL
Match: A0A6J1I8Q3 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111472469 PE=4 SV=1)

HSP 1 Score: 711 bits (1835), Expect = 3.68e-258
Identity = 350/355 (98.59%), Postives = 355/355 (100.00%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 60
           MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM
Sbjct: 37  MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 96

Query: 61  AVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDC 120
           AVIE+YSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKS+MEPI+VKNLRKLLMLSVDC
Sbjct: 97  AVIERYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSSMEPILVKNLRKLLMLSVDC 156

Query: 121 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 180
           RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG
Sbjct: 157 RVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEG 216

Query: 181 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 240
           FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY
Sbjct: 217 FGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPY 276

Query: 241 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 300
           LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG
Sbjct: 277 LNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQG 336

Query: 301 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQVRF 355
           IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLH+DRFLSLCGRRDK+CNSPQVRF
Sbjct: 337 IFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHFDRFLSLCGRRDKHCNSPQVRF 391

BLAST of Cp4.1LG15g02810 vs. ExPASy TrEMBL
Match: A0A1S3CE49 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103499943 PE=4 SV=1)

HSP 1 Score: 635 bits (1639), Expect = 3.75e-228
Identity = 317/354 (89.55%), Postives = 330/354 (93.22%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 60
           MRPKRKIYYRV ELDKVM+LQKKPSLILKLINIIQSQKHKFI LRDLEKEVGFVQKWNFM
Sbjct: 45  MRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQKWNFM 104

Query: 61  AVIEKYSSIFYVDSGSCR-RPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVD 120
           AVIEKYSSIFYV SGS R  PYVRL+NKAE IASEE KVKSAMEPI+VKNLRKLLMLSVD
Sbjct: 105 AVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVD 164

Query: 121 CRVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREE 180
           CRVPLENIEFIASELGLPCDFKTSLIP+YPEFFSVKE DGKAHL+LENWDSSLA+ ARE+
Sbjct: 165 CRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCARED 224

Query: 181 GFGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSP 240
           GFG+ARD+SSC + KRVRISKDGNF GPFAFKMCFPPGFRPN SYLEHLERWQKMDFPSP
Sbjct: 225 GFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPSP 284

Query: 241 YLNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQ 300
           YLNARRFD ADPK RKRVVAVLHEFLSLTMEKRM STQLDAFHREFLLPSKLLLCL+KHQ
Sbjct: 285 YLNARRFDVADPKTRKRVVAVLHEFLSLTMEKRMTSTQLDAFHREFLLPSKLLLCLVKHQ 344

Query: 301 GIFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQV 353
           GIFYITNKGARSTV LKE YEGS L DKCPLLLH DRFLSLCGRRD +CN+ QV
Sbjct: 345 GIFYITNKGARSTVFLKEGYEGSTLVDKCPLLLHSDRFLSLCGRRDVSCNTHQV 398

BLAST of Cp4.1LG15g02810 vs. ExPASy TrEMBL
Match: A0A5A7T281 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003010 PE=4 SV=1)

HSP 1 Score: 635 bits (1639), Expect = 3.75e-228
Identity = 317/354 (89.55%), Postives = 330/354 (93.22%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 60
           MRPKRKIYYRV ELDKVM+LQKKPSLILKLINIIQSQKHKFI LRDLEKEVGFVQKWNFM
Sbjct: 45  MRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKHKFILLRDLEKEVGFVQKWNFM 104

Query: 61  AVIEKYSSIFYVDSGSCR-RPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVD 120
           AVIEKYSSIFYV SGS R  PYVRL+NKAE IASEE KVKSAMEPI+VKNLRKLLMLSVD
Sbjct: 105 AVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVD 164

Query: 121 CRVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREE 180
           CRVPLENIEFIASELGLPCDFKTSLIP+YPEFFSVKE DGKAHL+LENWDSSLA+ ARE+
Sbjct: 165 CRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEADGKAHLNLENWDSSLAVCARED 224

Query: 181 GFGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSP 240
           GFG+ARD+SSC + KRVRISKDGNF GPFAFKMCFPPGFRPN SYLEHLERWQKMDFPSP
Sbjct: 225 GFGKARDLSSCGSGKRVRISKDGNFCGPFAFKMCFPPGFRPNTSYLEHLERWQKMDFPSP 284

Query: 241 YLNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQ 300
           YLNARRFD ADPK RKRVVAVLHEFLSLTMEKRM STQLDAFHREFLLPSKLLLCL+KHQ
Sbjct: 285 YLNARRFDVADPKTRKRVVAVLHEFLSLTMEKRMTSTQLDAFHREFLLPSKLLLCLVKHQ 344

Query: 301 GIFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQV 353
           GIFYITNKGARSTV LKE YEGS L DKCPLLLH DRFLSLCGRRD +CN+ QV
Sbjct: 345 GIFYITNKGARSTVFLKEGYEGSTLVDKCPLLLHSDRFLSLCGRRDVSCNTHQV 398

BLAST of Cp4.1LG15g02810 vs. ExPASy TrEMBL
Match: A0A0A0LVT2 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G164710 PE=4 SV=1)

HSP 1 Score: 632 bits (1631), Expect = 6.20e-227
Identity = 318/354 (89.83%), Postives = 329/354 (92.94%), Query Frame = 0

Query: 1   MRPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFM 60
           MRPKRKIYYRV ELDKVM+LQKKPSLILKLINIIQSQK+KFI LRDLEKEVGFVQKWNFM
Sbjct: 45  MRPKRKIYYRVAELDKVMDLQKKPSLILKLINIIQSQKNKFILLRDLEKEVGFVQKWNFM 104

Query: 61  AVIEKYSSIFYVDSGSCR-RPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVD 120
           AVIEKYSSIFYV SGS R  PYVRL+NKAE IASEE KVKSAMEPI+VKNLRKLLMLSVD
Sbjct: 105 AVIEKYSSIFYVGSGSSRVPPYVRLSNKAEMIASEEDKVKSAMEPILVKNLRKLLMLSVD 164

Query: 121 CRVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREE 180
           CRVPLENIEFIASELGLPCDFKTSLIP+YPEFFSVKEVDGKAHLHLENWDSSLAI ARE+
Sbjct: 165 CRVPLENIEFIASELGLPCDFKTSLIPKYPEFFSVKEVDGKAHLHLENWDSSLAICARED 224

Query: 181 GFGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSP 240
            F +ARD+SSC   KRVRISKDGNFSGPFAFKMCFP GFRPN SYLEHLERWQKMDFPSP
Sbjct: 225 RFAKARDLSSCGYGKRVRISKDGNFSGPFAFKMCFPSGFRPNTSYLEHLERWQKMDFPSP 284

Query: 241 YLNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQ 300
           YLNARRFD ADPK RKRVVAVLHEFLSLTMEKRM STQLDAFHREFLLPSKLLLCL+KHQ
Sbjct: 285 YLNARRFDVADPKTRKRVVAVLHEFLSLTMEKRMTSTQLDAFHREFLLPSKLLLCLVKHQ 344

Query: 301 GIFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNSPQV 353
           GIFYITNKGARSTV LKE YEGS+L DKCPLLLH DRFLSLCGRRD +CNS QV
Sbjct: 345 GIFYITNKGARSTVFLKEGYEGSILVDKCPLLLHSDRFLSLCGRRDMSCNSHQV 398

BLAST of Cp4.1LG15g02810 vs. TAIR 10
Match: AT1G79120.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 483.4 bits (1243), Expect = 1.5e-136
Identity = 238/349 (68.19%), Postives = 286/349 (81.95%), Query Frame = 0

Query: 2   RPKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEKEVGFVQKWNFMA 61
           RPK+K+Y+RV +LDK ++L KKPSLIL+L +IIQ+QKH  + LRDLEK VGFV KWN MA
Sbjct: 56  RPKQKVYHRVHDLDKAIDLNKKPSLILQLKSIIQAQKHGSLLLRDLEKHVGFVHKWNLMA 115

Query: 62  VIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDCR 121
            IEKY +IFYV  G    P+V LT KA+KIA+EE +   +MEPI+V NLRKLLM+SVDCR
Sbjct: 116 AIEKYPTIFYVGGGHKEPPFVMLTEKAKKIAAEESEATESMEPILVNNLRKLLMMSVDCR 175

Query: 122 VPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAISAREEGF 181
           VPLE +EFI S +GLP DFK++LIP+Y EFFS+K ++GK +L LENWDSSLAI+ARE+  
Sbjct: 176 VPLEKVEFIQSAMGLPQDFKSTLIPKYTEFFSLKVINGKVNLVLENWDSSLAITAREDRL 235

Query: 182 GRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPYL 241
            R     S  +RKRVRI+KDGNF G  AFK+ FPPGFRPN SYLE  E+WQKM+FPSPYL
Sbjct: 236 SREGFSESVGDRKRVRITKDGNFLGRNAFKISFPPGFRPNASYLEEFEKWQKMEFPSPYL 295

Query: 242 NARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQGI 301
           NARRFDAADPKARKRVVAVLHE LSLTMEKR+   QLDAFH E+LLPS+L+LCL+KHQGI
Sbjct: 296 NARRFDAADPKARKRVVAVLHELLSLTMEKRVTCAQLDAFHSEYLLPSRLILCLIKHQGI 355

Query: 302 FYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDKNCNS 351
           FYITNKGAR TV LK+AY GS L +KCPLLL +DRF++LCGR++ N ++
Sbjct: 356 FYITNKGARGTVFLKDAYAGSNLIEKCPLLLFHDRFVALCGRKEVNLSN 404

BLAST of Cp4.1LG15g02810 vs. TAIR 10
Match: AT5G21970.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-43
Identity = 109/342 (31.87%), Postives = 178/342 (52.05%), Query Frame = 0

Query: 10  RVDELDKVMELQKKPSLILKLINIIQSQKHKFIFLRDLE---KEVGFVQKWNFMAVIEKY 69
           RV EL+   E  K  S ++ L+ +++ ++   + +R  E   +++   +       I K 
Sbjct: 57  RVQELEIATEKWKIASKVIFLMEVLKGERDMIMTVRSFEQYRRQINLPKPHKISDFIRKS 116

Query: 70  SSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDCRVPLEN 129
             +F +        +  LT   E +  E  K+         +++ + LM+SVD ++PL+ 
Sbjct: 117 PKLFELYKDQRGVLWCGLTEGGEDLLDEHDKLLEENGDKAAEHVTRCLMMSVDKKLPLDK 176

Query: 130 IEFIASELGLPCDFKTSLIPEYPEFFSVKEV-DGKAHLHLENWDSSLAISARE-EGFGRA 189
           I     + GLP DF+ + +  +P+ F V ++ DG+ +L L +W+ + AI+  E +  G  
Sbjct: 177 IVHFRRDFGLPLDFRINWVYNFPQHFKVVKLGDGEEYLELVSWNPAWAITELEKKTLGIT 236

Query: 190 RDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPYLNAR 249
            D   CE+       K G  S   AF M FPP ++    Y   +E +QK  + SPY +AR
Sbjct: 237 ED---CEH-------KPGMLS--LAFPMKFPPSYKKMYRYRGKIEHFQKRSYLSPYADAR 296

Query: 250 RFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQGIFYI 309
             +A   +  KR +AV+HE LS T+EKR+ +  L  F REF++P KL+   LKH GIFY+
Sbjct: 297 GLEAGSKEFDKRAIAVMHELLSFTLEKRLVTDHLTHFRREFVMPQKLMRIFLKHCGIFYV 356

Query: 310 TNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSLCGRRDK 347
           + +G R +V L E YEG  L +KCPL+L  ++ L   G R +
Sbjct: 357 SERGKRFSVFLTEGYEGPELIEKCPLILWKEKLLKFTGYRGR 386

BLAST of Cp4.1LG15g02810 vs. TAIR 10
Match: AT4G01037.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 170.6 bits (431), Expect = 2.2e-42
Identity = 108/346 (31.21%), Postives = 181/346 (52.31%), Query Frame = 0

Query: 1   MRPKRKIYYRVDEL--DKVMELQKKPSLILKLINIIQSQKHKFIFLRDLEK---EVGFVQ 60
           + P R    R  EL  D V++  KK  L+L +  I+ SQ  + + LR L K   ++G  +
Sbjct: 69  VEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKK 128

Query: 61  KWNFMAVIEKYSSIFYVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLM 120
           +  F+A++ KY  +F +          ++T++AE++  +E ++++ +E ++V  LRKL+M
Sbjct: 129 RRRFIALLRKYPGVFEIVEEGAYSLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVM 188

Query: 121 LSVDCRVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGKAHLHLENWDSSLAIS 180
           +S+D R+ LE I  + ++LGLP +F+ ++   YP++F V        L L +WD  LA+S
Sbjct: 189 MSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVS 248

Query: 181 AREEGFGRARDVSSCENRKRVRISKDGNFSGPFAF-KMCFPPGFRPNMSYLEHLERWQKM 240
           A E        +S  +NR R    ++     P  F ++  P G   + S    + +++ M
Sbjct: 249 AAE--------LSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDM 308

Query: 241 DFPSPYLNARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLC 300
            + SPY +     +   +  K    V+HE LSLT EKR     L  F  EF    +L   
Sbjct: 309 QYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGM 368

Query: 301 LLKHQGIFYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSL 341
           L++H  +FY++ KG R +V L+EAY  S L DK PL L  ++  +L
Sbjct: 369 LIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRAL 406

BLAST of Cp4.1LG15g02810 vs. TAIR 10
Match: AT5G48040.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-33
Identity = 101/339 (29.79%), Postives = 163/339 (48.08%), Query Frame = 0

Query: 13  ELDKVMELQKKPSLILKLINIIQSQ---KHKFIFLRDLEKEVGFVQKWNFMAVIEKYSSI 72
           ELD V+  +K    +  L+++I +    +     L     ++G  Q+    A I +Y +I
Sbjct: 44  ELDAVVVREKHLRAVCNLVSVISASPDLRLPIFKLLPHRGQLGLPQELKLSAFIRRYPNI 103

Query: 73  F----YVDSGSCRRPYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLSVDCRVPLE 132
           F    Y DS     P   LT +   +  EE  V    E  V+  L KLLML+ +  + L 
Sbjct: 104 FVEHCYWDSAGTSVPCFGLTRETIDLYYEEVDVSRVNERDVLVRLCKLLMLTCERTLSLH 163

Query: 133 NIEFIASELGLPCDFKTSLIPEYPEFFSV----KEVDGKAHLHLENWDSSLAISAREEGF 192
           +I+ +  +LGLP D++ SLI ++P+ FS+     ++DG   L L +WD  LA+S      
Sbjct: 164 SIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLSSDLDG---LKLIHWDEHLAVS------ 223

Query: 193 GRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQKMDFPSPYL 252
                        ++++ +D       AF + F  GF      +E L+ WQ++ + SPY+
Sbjct: 224 -------------QMQLREDVGNDERMAFPVKFTRGFGLKRKSIEWLQEWQRLPYTSPYV 283

Query: 253 NARRFDAADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPSKLLLCLLKHQGI 312
           +A   D     + KR V V HE L LT+ K+     +    + F LP K      +H GI
Sbjct: 284 DASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFALPQKFTKVFERHPGI 343

Query: 313 FYITNKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSL 341
           FYI+ K    TV+L+EAY+   L +K PL+   ++F ++
Sbjct: 344 FYISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANM 360

BLAST of Cp4.1LG15g02810 vs. TAIR 10
Match: AT4G33495.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 136.7 bits (343), Expect = 3.6e-32
Identity = 115/354 (32.49%), Postives = 180/354 (50.85%), Query Frame = 0

Query: 3   PKRKIYYRVDELDKVMELQKKPSLILKLINIIQSQKHKFI---FLRDLEKEVGFVQKWNF 62
           PK++   R    D  ME++KK   ++K  ++I SQ +  I    L  L + +G   K + 
Sbjct: 41  PKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHE 100

Query: 63  M-AVIEKYSSIFYVDSGSCRR-PYVRLTNKAEKIASEEHKVKSAMEPIVVKNLRKLLMLS 122
             A + K+  +F +     +R  Y RLT KA      EH+      P  V  LRKL+M+S
Sbjct: 101 PGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMS 160

Query: 123 VDCRVPLENIEFIASELGLPCDFKTSLIPEYPEFFSVKEVDGK----AHLHLENWDSSLA 182
              R+ LE++    +E GLP DF+ S+I ++P+FF +  +DG+     ++ +   D +L+
Sbjct: 161 NTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRL--IDGEETRDKYIEIVEKDPNLS 220

Query: 183 ISAREEGFGRARDVSSCENRKRVRISKDGNFSGPFAFKMCFPPGFRPNMSYLEHLERWQK 242
           I A E    R R++   E R +   ++D  FS    F + FPPGF+    +   + +WQ+
Sbjct: 221 ICAIE----RVREI---EYRTKGIDAEDVRFS----FVVNFPPGFKIGKYFRIAVWKWQR 280

Query: 243 MDFPSPYLNARRFD----AADPKARKRVVAVLHEFLSLTMEKRMRSTQLDAFHREFLLPS 302
           + + SPY +   +D     A  +  KR VA +HE LSLT+EK++   ++  F     LP 
Sbjct: 281 LPYWSPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPK 340

Query: 303 KLLLCLLKHQGIFYIT---NKGARSTVLLKEAYEGSVLSDKCPLLLHYDRFLSL 341
           KL   LL+HQGIFYI+   N G   TV L+E Y+   L +   + L   R   L
Sbjct: 341 KLKEFLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAEL 381

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q65XL52.4e-4132.12Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon... [more]
A0MFS53.1e-4131.21Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
B6TTV81.9e-3830.30Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=... [more]
Q689D65.0e-3132.49Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1... [more]
Q9ZUZ67.3e-1424.93Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W... [more]
Match NameE-valueIdentityDescription
XP_023511734.11.37e-260100.00protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo] >XP_023511735.... [more]
KAG6571735.11.37e-26099.72Protein WHAT'S THIS FACTOR 1-like, chloroplastic, partial [Cucurbita argyrosperm... [more]
XP_022932961.19.25e-25999.44protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata] >XP_022932962.1 protei... [more]
XP_022973877.17.59e-25898.59protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima] >XP_022973878.1 protein ... [more]
KAG7011461.17.06e-25699.43Protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
A0A6J1F3A54.48e-25999.44protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114395... [more]
A0A6J1I8Q33.68e-25898.59protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111472469... [more]
A0A1S3CE493.75e-22889.55protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103499943 PE=4... [more]
A0A5A7T2813.75e-22889.55Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A0A0LVT26.20e-22789.83PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G164710 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT1G79120.11.5e-13668.19Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT5G21970.11.2e-4331.87Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT4G01037.12.2e-4231.21Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT5G48040.12.5e-3329.79Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT4G33495.13.6e-3232.49Ubiquitin carboxyl-terminal hydrolase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021099Plant organelle RNA recognition domainPFAMPF11955PORRcoord: 10..344
e-value: 1.5E-103
score: 346.2
IPR045040PORR familyPANTHERPTHR31476PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTICcoord: 2..348
NoneNo IPR availablePANTHERPTHR31476:SF11UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEINcoord: 2..348

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g02810.1Cp4.1LG15g02810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding