Cp4.1LG15g02280 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g02280
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG15: 2065062 .. 2066308 (-)
RNA-Seq Expression	Cp4.1LG15g02280
Synteny	Cp4.1LG15g02280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAACGGGCCAAATTTCATTGGTGTTCTAGACCCCCGGGTTTTTCGATTTCCGATCTGAATGCTCCTTAACTTGTAAACCTCAGATTTGTGAGTTTGAACCTTCTCTCTTCGGACTGCGATGAGCATCTTCAACGCCGCCGCCGCCGCCGCCGCTGCTAGCCCCTACAGATGAATGGGTTCTCTATCTCGCATGGTGCCCCTCTGCAATGCCCTCTTTCTCTTCCCAAGCCCTAAAAAACCCCGCTGTGTTTCGCCCCAAATCCAAGCAACTCCCGGATTCCACTCGCCCTTGTATCGTTCAGTCCCTTCTCAACCACTCTTCTCAGGGGAACCTCCCGGAAGCCCTCTCCCACCTCGACCCACTTGTCCAAAGAGGCATACGCTTACCCACTAGCGTTTTCGTCCACCTCTTGCGACTTTGTGCCAAAGCCAAGTCATTAAAAGGAGGAAAATCGGTTCATCTGCATTTGAAACTCACGGGCTTCAAACGCCCTACAACTATCATTGCGAACCATTTGATTGGTATGTACTTTCAATGTGGCAGTGACATAGAGGCACGTAAGGTGTTTGATAAAATGTCTGTAAGAAATTTGTACTCTTGGAACCATATGCTTGCTGGGTATGCTAAGTTGGGAAATGTATATCAAGCTAGGAAGTTGTTCGATACAATGATAGAGAAGGATGTCATATCATGGAACACAATGGTTCTTGCTTATGCTAAGAAGGGGTGTTTGAATGAAGCTATTGGGTTGTACAGAGACTTTAGGAGACAAGATATGGGGTTCAATGAGTTTAGTTTTGCTGGTCTTTTGATTCTTTGTGTGAAGCTCAAGGAATTGCAGCTCGCCAAGCAGGTTCATACGCAGGTGTTGGTTGTTGGATTCTTGTCTAATATAGTTCTTTCTAGTTCAATTGTTGATGCATATGCAAAATGTGGAGAGATGGAATGTGCAAAGAGATTGTTTGATGAAATGCCTGTTAAAGATATCCTTGCATGGACTACAATGGTCTCTGGATATGCTAAATGGGGTGATATGAATTTAGCTAGCGGATTGTTTCATCAAATGCCTGAAAAGAATCCTGTCTCCTGGACAGCTTTGATATCAGGCTATGCAAGAAACAGTTTGGGACATGAAGCACTCGATTACTTTACACAAATGATGAAGTTTCGAGTTAATCCCGACCAATTTACGTTCAGTAGTTGTCTCTGTGCTTGTGCCAGCATTGCTGCACTAAAGCAT

mRNA sequence

ATGGCATCTTCAACGCCGCCGCCGCCGCCGCCGCTGCTAGCCCCTACAGATGAATGGGTTCTCTATCTCGCATGGTGCCCCTCTGCAATGCCCTCTTTCTCTTCCCAAGCCCTAAAAAACCCCGCTGTGTTTCGCCCCAAATCCAAGCAACTCCCGGATTCCACTCGCCCTTGTATCGTTCAGTCCCTTCTCAACCACTCTTCTCAGGGGAACCTCCCGGAAGCCCTCTCCCACCTCGACCCACTTGTCCAAAGAGGCATACGCTTACCCACTAGCGTTTTCGTCCACCTCTTGCGACTTTGTGCCAAAGCCAAAGACTTTAGGAGACAAGATATGGGGTTCAATGAGTTTAGTTTTGCTGGTCTTTTGATTCTTTGTGTGAAGCTCAAGGAATTGCAGCTCGCCAAGCAGAATCCTGTCTCCTGGACAGCTTTGATATCAGGCTATGCAAGAAACAGTTTGGGACATGAAGCACTCGATTACTTTACACAAATGATGAAGTTTCGAGTTAATCCCGACCAATTTACGTTCAGTAGTTGTCTCTGTGCTTGTGCCAGCATTGCTGCACTAAAGCAT

Coding sequence (CDS)

ATGGCATCTTCAACGCCGCCGCCGCCGCCGCCGCTGCTAGCCCCTACAGATGAATGGGTTCTCTATCTCGCATGGTGCCCCTCTGCAATGCCCTCTTTCTCTTCCCAAGCCCTAAAAAACCCCGCTGTGTTTCGCCCCAAATCCAAGCAACTCCCGGATTCCACTCGCCCTTGTATCGTTCAGTCCCTTCTCAACCACTCTTCTCAGGGGAACCTCCCGGAAGCCCTCTCCCACCTCGACCCACTTGTCCAAAGAGGCATACGCTTACCCACTAGCGTTTTCGTCCACCTCTTGCGACTTTGTGCCAAAGCCAAAGACTTTAGGAGACAAGATATGGGGTTCAATGAGTTTAGTTTTGCTGGTCTTTTGATTCTTTGTGTGAAGCTCAAGGAATTGCAGCTCGCCAAGCAGAATCCTGTCTCCTGGACAGCTTTGATATCAGGCTATGCAAGAAACAGTTTGGGACATGAAGCACTCGATTACTTTACACAAATGATGAAGTTTCGAGTTAATCCCGACCAATTTACGTTCAGTAGTTGTCTCTGTGCTTGTGCCAGCATTGCTGCACTAAAGCAT

Protein sequence

MASSTPPPPPPLLAPTDEWVLYLAWCPSAMPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRLPTSVFVHLLRLCAKAKDFRRQDMGFNEFSFAGLLILCVKLKELQLAKQNPVSWTALISGYARNSLGHEALDYFTQMMKFRVNPDQFTFSSCLCACASIAALKH

Homology

[Close]

BLAST of Cp4.1LG15g02280 vs. ExPASy Swiss-Prot
Match: Q9SKQ4 (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.9e-17
Identity = 57/162 (35.19%), Postives = 69/162 (42.59%), Query Frame = 0


Query: 105 KDFRRQDMGFNEFSFAGLLILCVKLKELQLAKQ--------------------------- 164
           K+FRR  + FNEFSFAGLL  CVK ++LQL +Q                           
Sbjct: 168 KEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKC 227

Query: 165 -----------------------------------------------NPVSWTALISGYA 193
                                                          NPVSWTALI+GY 
Sbjct: 228 GQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYV 287

[Close]

BLAST of Cp4.1LG15g02280 vs. ExPASy Swiss-Prot
Match: Q9SR82 (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-09
Identity = 39/159 (24.53%), Postives = 73/159 (45.91%), Query Frame = 0


Query: 50  QLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRLPTSVFVHLLRLCAKAKD--- 109
           ++PD +          +++ G   EA+     +V+ G++  +   V +L  C    D   
Sbjct: 171 EIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDS 230

Query: 110 -------FRRQDMGFNEF---SFAGLLILCVKLKELQ-----LAKQNPVSWTALISGYAR 169
                      +M  N F   +   L   C K+++ +     + +++ V+W+ +I GYA 
Sbjct: 231 GEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYAS 290

Query: 170 NSLGHEALDYFTQMMKFRVNPDQFTFSSCLCACASIAAL 191
           NS   E ++ F QM++  + PDQF+    L +CAS+ AL
Sbjct: 291 NSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGAL 329

[Close]

BLAST of Cp4.1LG15g02280 vs. ExPASy Swiss-Prot
Match: Q9SJK9 (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E73 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.5e-09
Identity = 30/85 (35.29%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 116 EFSFAGLLILCVKLKELQLA--------KQNPVSWTALISGYARNSLGHEALDYFTQMMK 175
           + S+  ++  C+K+ E + A        ++N V+WT +I+GY RN  G +AL +F +MMK
Sbjct: 271 QVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMK 330

Query: 176 FRVNPDQFTFSSCLCACASIAALKH 193
             V+ D F + + L AC+ +A L H
Sbjct: 331 SGVDSDHFAYGAVLHACSGLALLGH 355

[Close]

BLAST of Cp4.1LG15g02280 vs. ExPASy Swiss-Prot
Match: Q9SVA5 (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E52 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 134 LAKQNPVSWTALISGYARNSLGHEALDYFTQMMKFRVNPDQFTFSSCLCACASIAAL 191
           +  +N +SWT L+SGY +N+L  EA++ FT M KF + PD +  SS L +CAS+ AL
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHAL 366

[Close]

BLAST of Cp4.1LG15g02280 vs. ExPASy Swiss-Prot
Match: Q9LND4 (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 33/109 (30.28%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 92  SVFVHLLRLCAKAKDFRRQDMGFNEFSFAGLLILCVKLKELQLAK--------QNPVSWT 151
           +VF   +  C      RR  +  +++  A ++ + VK + L  A+        +N V WT
Sbjct: 222 NVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWT 281

Query: 152 ALISGYARNSLGHEALDYFTQMMKFRVNPDQFTFSSCLCACASIAALKH 193
            LISG+A+     EA D F QM++  + P+Q T ++ L +C+S+ +L+H
Sbjct: 282 TLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRH 330

[Close]

BLAST of Cp4.1LG15g02280 vs. NCBI nr
Match: XP_023553643.1 (pentatricopeptide repeat-containing protein At2g21090 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251 bits (642), Expect = 6.74e-77
Identity = 163/345 (47.25%), Postives = 163/345 (47.25%), Query Frame = 0


Query: 30  MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 89
           MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL
Sbjct: 1   MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 60

Query: 90  PTSVFVHLLRLCAKAK-------------------------------------------- 149
           PTSVFVHLLRLCAKAK                                            
Sbjct: 61  PTSVFVHLLRLCAKAKSLKGGKSVHLHLKLTGFKRPTTIIANHLIGMYFQCGSDIEARKV 120

Query: 150 ------------------------------------------------------------ 192
                                                                       
Sbjct: 121 FDKMSVRNLYSWNHMLAGYAKLGNVYQARKLFDTMIEKDVISWNTMVLAYAKKGCLNEAI 180

[Close]

BLAST of Cp4.1LG15g02280 vs. NCBI nr
Match: XP_022963954.1 (pentatricopeptide repeat-containing protein At2g21090 [Cucurbita moschata])

HSP 1 Score: 246 bits (627), Expect = 1.13e-74
Identity = 161/345 (46.67%), Postives = 161/345 (46.67%), Query Frame = 0


Query: 30  MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 89
           MPSFSSQALK PAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALS LDPLVQRGIRL
Sbjct: 1   MPSFSSQALKKPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSFLDPLVQRGIRL 60

Query: 90  PTSVFVHLLRLCAKAK-------------------------------------------- 149
           PTSVFVHLLRLCAKAK                                            
Sbjct: 61  PTSVFVHLLRLCAKAKSLKGGKSVHLHLKLTGFKRPTTIVANHLIGMYFQCGSDTEARKV 120

Query: 150 ------------------------------------------------------------ 192
                                                                       
Sbjct: 121 FDKMSVRNLYSWNHMLAGYAKLGNVYQARKLFDTMIEKDVISWNTMVLAYAKKGCFNEAI 180

[Close]

BLAST of Cp4.1LG15g02280 vs. NCBI nr
Match: KAG6571677.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245 bits (625), Expect = 1.76e-74
Identity = 160/345 (46.38%), Postives = 162/345 (46.96%), Query Frame = 0


Query: 30  MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 89
           MPSFSSQALK PAVFRPKSKQLPDSTRPCIVQSLLNHSSQG+LPEALS+LDPLVQRGIRL
Sbjct: 1   MPSFSSQALKKPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGHLPEALSYLDPLVQRGIRL 60

Query: 90  PTSVFVHLLRLCAKAK-------------------------------------------- 149
           PTSVFVHLLRLCAKAK                                            
Sbjct: 61  PTSVFVHLLRLCAKAKSLKGGKSVHLHLKLTGFKRPTTIVANHLIGMYFQCGSDTEARKV 120

Query: 150 ------------------------------------------------------------ 192
                                                                       
Sbjct: 121 FDKMSVRNLYSWNHMLAGYAKLGNVYQARKLFDTMIEKDVISWNTMVLAYAKKGCFNEAI 180

[Close]

BLAST of Cp4.1LG15g02280 vs. NCBI nr
Match: KAG7011402.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245 bits (625), Expect = 2.23e-74
Identity = 160/345 (46.38%), Postives = 162/345 (46.96%), Query Frame = 0


Query: 30  MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 89
           MPSFSSQALK PAVFRPKSKQLPDSTRPCIVQSLLNHSSQG+LPEALS+LDPLVQRGIRL
Sbjct: 1   MPSFSSQALKKPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGHLPEALSYLDPLVQRGIRL 60

Query: 90  PTSVFVHLLRLCAKAK-------------------------------------------- 149
           PTSVFVHLLRLCAKAK                                            
Sbjct: 61  PTSVFVHLLRLCAKAKSLKGGKSVHLHLKLTGFKRPTTIVANHLIGMYFQCGSDTEARKV 120

Query: 150 ------------------------------------------------------------ 192
                                                                       
Sbjct: 121 FDKMSVRNLYSWNHMLAGYAKLGNVYQARKLFDTMIEKDVISWNTMVLAYAKKGCFNEAI 180

[Close]

BLAST of Cp4.1LG15g02280 vs. NCBI nr
Match: XP_022967585.1 (pentatricopeptide repeat-containing protein At2g21090-like [Cucurbita maxima])

HSP 1 Score: 240 bits (613), Expect = 1.33e-72
Identity = 157/345 (45.51%), Postives = 161/345 (46.67%), Query Frame = 0


Query: 30  MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 89
           MPSFSSQALK PAVFRPKSK LPDS+RPCIVQSLLNHSSQG+LPEALS+LDPLVQRGIRL
Sbjct: 1   MPSFSSQALKKPAVFRPKSKHLPDSSRPCIVQSLLNHSSQGHLPEALSYLDPLVQRGIRL 60

Query: 90  PTSVFVHLLRLCAKAK-------------------------------------------- 149
           PTSVFVHLLRLCAKAK                                            
Sbjct: 61  PTSVFVHLLRLCAKAKSLKGGKSVHLHLKLTGFKRPTTIIANHLIGMYFQCGSDIEARKV 120

Query: 150 ------------------------------------------------------------ 192
                                                                       
Sbjct: 121 FDKMSVRNLYSWNHMLAGYAKLGNVYQARKVFDTMIEKDVISWNTMVLAYAKKGCFNEAI 180

[Close]

BLAST of Cp4.1LG15g02280 vs. ExPASy TrEMBL
Match: A0A6J1HLP5 (pentatricopeptide repeat-containing protein At2g21090 OS=Cucurbita moschata OX=3662 GN=LOC111464099 PE=4 SV=1)

HSP 1 Score: 246 bits (627), Expect = 5.46e-75
Identity = 161/345 (46.67%), Postives = 161/345 (46.67%), Query Frame = 0


Query: 30  MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 89
           MPSFSSQALK PAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALS LDPLVQRGIRL
Sbjct: 1   MPSFSSQALKKPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSFLDPLVQRGIRL 60

Query: 90  PTSVFVHLLRLCAKAK-------------------------------------------- 149
           PTSVFVHLLRLCAKAK                                            
Sbjct: 61  PTSVFVHLLRLCAKAKSLKGGKSVHLHLKLTGFKRPTTIVANHLIGMYFQCGSDTEARKV 120

Query: 150 ------------------------------------------------------------ 192
                                                                       
Sbjct: 121 FDKMSVRNLYSWNHMLAGYAKLGNVYQARKLFDTMIEKDVISWNTMVLAYAKKGCFNEAI 180

[Close]

BLAST of Cp4.1LG15g02280 vs. ExPASy TrEMBL
Match: A0A6J1HUW8 (pentatricopeptide repeat-containing protein At2g21090-like OS=Cucurbita maxima OX=3661 GN=LOC111467037 PE=4 SV=1)

HSP 1 Score: 240 bits (613), Expect = 6.46e-73
Identity = 157/345 (45.51%), Postives = 161/345 (46.67%), Query Frame = 0


Query: 30  MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 89
           MPSFSSQALK PAVFRPKSK LPDS+RPCIVQSLLNHSSQG+LPEALS+LDPLVQRGIRL
Sbjct: 1   MPSFSSQALKKPAVFRPKSKHLPDSSRPCIVQSLLNHSSQGHLPEALSYLDPLVQRGIRL 60

Query: 90  PTSVFVHLLRLCAKAK-------------------------------------------- 149
           PTSVFVHLLRLCAKAK                                            
Sbjct: 61  PTSVFVHLLRLCAKAKSLKGGKSVHLHLKLTGFKRPTTIIANHLIGMYFQCGSDIEARKV 120

Query: 150 ------------------------------------------------------------ 192
                                                                       
Sbjct: 121 FDKMSVRNLYSWNHMLAGYAKLGNVYQARKVFDTMIEKDVISWNTMVLAYAKKGCFNEAI 180

[Close]

BLAST of Cp4.1LG15g02280 vs. ExPASy TrEMBL
Match: A0A5D3C6K7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002430 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 3.60e-56
Identity = 137/345 (39.71%), Postives = 146/345 (42.32%), Query Frame = 0


Query: 30  MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 89
           MPSFSSQALK PA FRPK +Q PDSTR CI QSLL+ SSQG LPEALS+LD L QRGIRL
Sbjct: 1   MPSFSSQALKKPASFRPKCEQSPDSTRICIAQSLLDLSSQGRLPEALSYLDRLAQRGIRL 60

Query: 90  PTSVFVHLLRLCAKAK-------------------------------------------- 149
           PTS FV LLRLCAKAK                                            
Sbjct: 61  PTSTFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKV 120

Query: 150 ------------------------------------------------------------ 192
                                                                       
Sbjct: 121 FDKMSVRNLYSWNHMLAGYAKLGEVHHARKLFDRMMEKDVVSWNTMVLAYAKKGCFNEAI 180

[Close]

BLAST of Cp4.1LG15g02280 vs. ExPASy TrEMBL
Match: A0A1S3BZY1 (pentatricopeptide repeat-containing protein At2g21090 OS=Cucumis melo OX=3656 GN=LOC103495423 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 3.60e-56
Identity = 137/345 (39.71%), Postives = 146/345 (42.32%), Query Frame = 0


Query: 30  MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 89
           MPSFSSQALK PA FRPK +Q PDSTR CI QSLL+ SSQG LPEALS+LD L QRGIRL
Sbjct: 1   MPSFSSQALKKPASFRPKCEQSPDSTRICIAQSLLDLSSQGRLPEALSYLDRLAQRGIRL 60

Query: 90  PTSVFVHLLRLCAKAK-------------------------------------------- 149
           PTS FV LLRLCAKAK                                            
Sbjct: 61  PTSTFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKV 120

Query: 150 ------------------------------------------------------------ 192
                                                                       
Sbjct: 121 FDKMSVRNLYSWNHMLAGYAKLGEVHHARKLFDRMMEKDVVSWNTMVLAYAKKGCFNEAI 180

[Close]

BLAST of Cp4.1LG15g02280 vs. ExPASy TrEMBL
Match: A0A0A0K215 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062860 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 5.03e-56
Identity = 136/345 (39.42%), Postives = 146/345 (42.32%), Query Frame = 0


Query: 30  MPSFSSQALKNPAVFRPKSKQLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRL 89
           MPSFSSQA K PA F PKSKQ PDST  CI QSLL+ SSQG LPEALS+LD L QRG+RL
Sbjct: 1   MPSFSSQAFKTPASFGPKSKQRPDSTSLCIAQSLLDLSSQGRLPEALSYLDRLAQRGVRL 60

Query: 90  PTSVFVHLLRLCAKAK-------------------------------------------- 149
           PT +FV LLRLCAKAK                                            
Sbjct: 61  PTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKV 120

Query: 150 ------------------------------------------------------------ 192
                                                                       
Sbjct: 121 FDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAI 180

[Close]

BLAST of Cp4.1LG15g02280 vs. TAIR 10
Match: AT2G21090.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-18
Identity = 57/162 (35.19%), Postives = 69/162 (42.59%), Query Frame = 0


Query: 105 KDFRRQDMGFNEFSFAGLLILCVKLKELQLAKQ--------------------------- 164
           K+FRR  + FNEFSFAGLL  CVK ++LQL +Q                           
Sbjct: 168 KEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKC 227

Query: 165 -----------------------------------------------NPVSWTALISGYA 193
                                                          NPVSWTALI+GY 
Sbjct: 228 GQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYV 287

[Close]

BLAST of Cp4.1LG15g02280 vs. TAIR 10
Match: AT3G08820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 39/159 (24.53%), Postives = 73/159 (45.91%), Query Frame = 0


Query: 50  QLPDSTRPCIVQSLLNHSSQGNLPEALSHLDPLVQRGIRLPTSVFVHLLRLCAKAKD--- 109
           ++PD +          +++ G   EA+     +V+ G++  +   V +L  C    D   
Sbjct: 171 EIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDS 230

Query: 110 -------FRRQDMGFNEF---SFAGLLILCVKLKELQ-----LAKQNPVSWTALISGYAR 169
                      +M  N F   +   L   C K+++ +     + +++ V+W+ +I GYA 
Sbjct: 231 GEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYAS 290

Query: 170 NSLGHEALDYFTQMMKFRVNPDQFTFSSCLCACASIAAL 191
           NS   E ++ F QM++  + PDQF+    L +CAS+ AL
Sbjct: 291 NSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGAL 329

[Close]

BLAST of Cp4.1LG15g02280 vs. TAIR 10
Match: AT2G36980.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-10
Identity = 30/85 (35.29%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 116 EFSFAGLLILCVKLKELQLA--------KQNPVSWTALISGYARNSLGHEALDYFTQMMK 175
           + S+  ++  C+K+ E + A        ++N V+WT +I+GY RN  G +AL +F +MMK
Sbjct: 271 QVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMK 330

Query: 176 FRVNPDQFTFSSCLCACASIAALKH 193
             V+ D F + + L AC+ +A L H
Sbjct: 331 SGVDSDHFAYGAVLHACSGLALLGH 355

[Close]

BLAST of Cp4.1LG15g02280 vs. TAIR 10
Match: AT1G06140.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 33/109 (30.28%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 92  SVFVHLLRLCAKAKDFRRQDMGFNEFSFAGLLILCVKLKELQLAK--------QNPVSWT 151
           +VF   +  C      RR  +  +++  A ++ + VK + L  A+        +N V WT
Sbjct: 222 NVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWT 281

Query: 152 ALISGYARNSLGHEALDYFTQMMKFRVNPDQFTFSSCLCACASIAALKH 193
            LISG+A+     EA D F QM++  + P+Q T ++ L +C+S+ +L+H
Sbjct: 282 TLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRH 330

[Close]

BLAST of Cp4.1LG15g02280 vs. TAIR 10
Match: AT4G39530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 134 LAKQNPVSWTALISGYARNSLGHEALDYFTQMMKFRVNPDQFTFSSCLCACASIAAL 191
           +  +N +SWT L+SGY +N+L  EA++ FT M KF + PD +  SS L +CAS+ AL
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHAL 366

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g02280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKQ4	2.9e-17	35.19	Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana OX...	[more]
Q9SR82	2.2e-09	24.53	Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th...	[more]
Q9SJK9	8.5e-09	35.29	Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidop...	[more]
Q9SVA5	1.9e-08	47.37	Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX...	[more]
Q9LND4	1.9e-08	30.28	Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop...	[more]

BLAST of Cp4.1LG15g02280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553643.1	6.74e-77	47.25	pentatricopeptide repeat-containing protein At2g21090 [Cucurbita pepo subsp. pep...	[more]
XP_022963954.1	1.13e-74	46.67	pentatricopeptide repeat-containing protein At2g21090 [Cucurbita moschata]	[more]
KAG6571677.1	1.76e-74	46.38	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG7011402.1	2.23e-74	46.38	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022967585.1	1.33e-72	45.51	pentatricopeptide repeat-containing protein At2g21090-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG15g02280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLP5	5.46e-75	46.67	pentatricopeptide repeat-containing protein At2g21090 OS=Cucurbita moschata OX=3...	[more]
A0A6J1HUW8	6.46e-73	45.51	pentatricopeptide repeat-containing protein At2g21090-like OS=Cucurbita maxima O...	[more]
A0A5D3C6K7	3.60e-56	39.71	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BZY1	3.60e-56	39.71	pentatricopeptide repeat-containing protein At2g21090 OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0K215	5.03e-56	39.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062860 PE=4 SV=1	[more]

BLAST of Cp4.1LG15g02280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21090.1	2.1e-18	35.19	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G08820.1	1.6e-10	24.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G36980.1	6.0e-10	35.29	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G06140.1	1.3e-09	30.28	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G39530.1	1.3e-09	47.37	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 59..191 e-value: 4.3E-17 score: 64.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 138..185 e-value: 6.1E-10 score: 39.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 140..173 e-value: 1.1E-7 score: 29.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 138..172 score: 10.884628
None	No IPR available	PANTHER	PTHR47925:SF1	SUBFAMILY NOT NAMED	coord: 120..190
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 120..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g02280.1	Cp4.1LG15g02280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding