Cp4.1LG15g02050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g02050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-H2 finger protein ATL29
Location	Cp4.1LG15: 1702351 .. 1703483 (+)
RNA-Seq Expression	Cp4.1LG15g02050
Synteny	Cp4.1LG15g02050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGTGGAAGGTGTTAGCCATCTCCATCTCCATTAACCTTAAACCATTGAAAGCAACAAGAACGAGTCATTGCGAGAAGAAGAAGGAGCATGAAGAAACACCATAATGAGTCCCCTTATTAATTCTCCTCCTCCTCCGCCGTCTCCTCCGCCGCCATCTCCTCCTTCCTCCTCCTCCTCCTCCTTCCTCCTCCATGTCTTTTTCCGGCCAATGTCCACCGATTTCTCCCACTCTTCTTTCTCCCCTGAAGAACACTCCACTCCTCCTCTCACCATTATCCTCACTCTCATCCTCCTCGCCTTCCTCCTCGTCGGCTTCTTCTCCATCTACTTCTGCCGCTGCATCATGGACTCCCTCCTCCATTCCCGCAACCTCCGCCGCTCCCCTTCCGGCAATATCCTCCACCCTTCCGCCGATTCCCCCACCGTCCCTCCCGGCCTCGACCCACTTCTCATAAACACCTTCCCCACCTTCCCATATTCCGGCATCAAGGAATTTCGCAGCGACAAATTCGGATTAGAATGCGCCATTTGCTTACTTGAATTCGACGACGACAGCTTCCTCCGCCTCCTCACTGTCTGCTGCCATGTCTTCCATCAAGAATGCATTGATCTCTGGCTTGAATCCCACAAAACCTGCCCTGTTTGTCGCCGGAATCTCGACTCCGATTCCGCCAGAAACTCCGCCGATAAGCCCCCTGATTCCGATGATCATGACAACCCACCACGCAGTACCCATCATGAATCAATCGAAGATGCTATTAGTATTGACATTGACGACGACGTCGACGACGATGACAACGCCGACGCCGATGACGACGACGATCGCCGGTCTGGTTCGAACAGAGGAAAACAGAGTATAAAAACAGAGGAGGCGGAGGACGACGGTATCAAGAAATTCTCGAGATGCCATTCAACGGGTCATTCGATTTTGAAGGCGAGAAGGAAAGATGATGATCGGTATAAGCTGAGATTGCCGGAACATGTAAAGATTAAGATCATTAGAGGGCATAATTGGACGGGGAGTTGTGTGACTTTTGAAGAATTTTTACGAAATCCTGGGAATGGTGGTGGGTTCTCGGAGCTATCTGAATCTGATGATCGAATTGATTTGCAGAAGCCGCCATGA

mRNA sequence

ATGGCTATAAACACCATAATGAGTCCCCTTATTAATTCTCCTCCTCCTCCGCCGTCTCCTCCGCCGCCATCTCCTCCTTCCTCCTCCTCCTCCTCCTTCCTCCTCCATGTCTTTTTCCGGCCAATGTCCACCGATTTCTCCCACTCTTCTTTCTCCCCTGAAGAACACTCCACTCCTCCTCTCACCATTATCCTCACTCTCATCCTCCTCGCCTTCCTCCTCGTCGGCTTCTTCTCCATCTACTTCTGCCGCTGCATCATGGACTCCCTCCTCCATTCCCGCAACCTCCGCCGCTCCCCTTCCGGCAATATCCTCCACCCTTCCGCCGATTCCCCCACCGTCCCTCCCGGCCTCGACCCACTTCTCATAAACACCTTCCCCACCTTCCCATATTCCGGCATCAAGGAATTTCGCAGCGACAAATTCGGATTAGAATGCGCCATTTGCTTACTTGAATTCGACGACGACAGCTTCCTCCGCCTCCTCACTGTCTGCTGCCATGTCTTCCATCAAGAATGCATTGATCTCTGGCTTGAATCCCACAAAACCTGCCCTGCGAGAAGGAAAGATGATGATCGGTATAAGCTGAGATTGCCGGAACATGTAAAGATTAAGATCATTAGAGGGCATAATTGGACGGGGAGTTGTGTGACTTTTGAAGAATTTTTACGAAATCCTGGGAATGGTGGTGGGTTCTCGGAGCTATCTGAATCTGATGATCGAATTGATTTGCAGAAGCCGCCATGA

Coding sequence (CDS)

ATGGCTATAAACACCATAATGAGTCCCCTTATTAATTCTCCTCCTCCTCCGCCGTCTCCTCCGCCGCCATCTCCTCCTTCCTCCTCCTCCTCCTCCTTCCTCCTCCATGTCTTTTTCCGGCCAATGTCCACCGATTTCTCCCACTCTTCTTTCTCCCCTGAAGAACACTCCACTCCTCCTCTCACCATTATCCTCACTCTCATCCTCCTCGCCTTCCTCCTCGTCGGCTTCTTCTCCATCTACTTCTGCCGCTGCATCATGGACTCCCTCCTCCATTCCCGCAACCTCCGCCGCTCCCCTTCCGGCAATATCCTCCACCCTTCCGCCGATTCCCCCACCGTCCCTCCCGGCCTCGACCCACTTCTCATAAACACCTTCCCCACCTTCCCATATTCCGGCATCAAGGAATTTCGCAGCGACAAATTCGGATTAGAATGCGCCATTTGCTTACTTGAATTCGACGACGACAGCTTCCTCCGCCTCCTCACTGTCTGCTGCCATGTCTTCCATCAAGAATGCATTGATCTCTGGCTTGAATCCCACAAAACCTGCCCTGCGAGAAGGAAAGATGATGATCGGTATAAGCTGAGATTGCCGGAACATGTAAAGATTAAGATCATTAGAGGGCATAATTGGACGGGGAGTTGTGTGACTTTTGAAGAATTTTTACGAAATCCTGGGAATGGTGGTGGGTTCTCGGAGCTATCTGAATCTGATGATCGAATTGATTTGCAGAAGCCGCCATGA

Protein sequence

MAINTIMSPLINSPPPPPSPPPPSPPSSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCPARRKDDDRYKLRLPEHVKIKIIRGHNWTGSCVTFEEFLRNPGNGGGFSELSESDDRIDLQKPP

Homology

[Close]

BLAST of Cp4.1LG15g02050 vs. ExPASy Swiss-Prot
Match: O49691 (RING-H2 finger protein ATL29 OS=Arabidopsis thaliana OX=3702 GN=ATL29 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 9.2e-48
Identity = 106/260 (40.77%), Postives = 136/260 (52.31%), Query Frame = 0


Query: 53  PEEH-STPPLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRR---SPSGNILHPS 112
           P++H  TPPLT+ILT+ILL F  +GFF++YFC+C +D+++ +  L     + S N L   
Sbjct: 14  PQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQ-Q 73

Query: 113 ADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHV 172
            ++P V PGL+  +IN+FPTFPYS +K+ R +K+GLECAICLLEFD D  LRLLT C HV
Sbjct: 74  PEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHV 133

Query: 173 FHQECIDLWLESHKTCPARRKD-------------------------------------- 228
           FHQECIDLW ESH+TCP  R+D                                      
Sbjct: 134 FHQECIDLWFESHRTCPVCRRDLDPPPPPENTKPTVDEMIIDVIQETSDDEEDDHHRQQT 193

[Close]

BLAST of Cp4.1LG15g02050 vs. ExPASy Swiss-Prot
Match: Q9FIR0 (RING-H2 finger protein ATL30 OS=Arabidopsis thaliana OX=3702 GN=ATL30 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.0e-39
Identity = 100/267 (37.45%), Postives = 130/267 (48.69%), Query Frame = 0


Query: 51  FSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRS---PSGNI-LH 110
           + P+ +S PPL IILT+ILL    +GFF+IYFC+C   +L  + N       P   I   
Sbjct: 15  YPPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQIQAQ 74

Query: 111 PSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDS-FLRLLTVC 170
                P V PGL+P +I ++P FP+S +K+ R DK+GLECAICLLEF+++   LRLLT C
Sbjct: 75  QEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTC 134

Query: 171 CHVFHQECIDLWLESHKTCPARRK------------------------------------ 230
            HVFHQECID WLES+KTCP  R+                                    
Sbjct: 135 YHVFHQECIDQWLESNKTCPVCRRNLDPNAPENIKELIIEVIQENAHENRDQEQTSTSNE 194

Query: 231 --------------------------------------DDDRYKLRLPEHVKIKIIRGH- 237
                                                 ++DRY LRLP+HVKIK+ R H 
Sbjct: 195 VMLSRQSSGNNERKIETLPDKFSRSKTTGHSIVRNKPEEEDRYTLRLPDHVKIKVTRRHN 254

[Close]

BLAST of Cp4.1LG15g02050 vs. ExPASy Swiss-Prot
Match: Q6NKR1 (RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 60  PLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLD 119
           P+T++LT +LL  +  GFFS++  + +++ L  + NL+R+P G+++H +  +P    GLD
Sbjct: 22  PVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVA--TPPENTGLD 81

Query: 120 PLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLE 179
           P +I +FP F YS   +      G ECAICL EF D+  +RL+TVC H FH  CIDLW E
Sbjct: 82  PFIIRSFPVFHYSSATK---KNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFE 141

Query: 180 SHKTCPARRKDDD 193
            HKTCP  R + D
Sbjct: 142 LHKTCPVCRCELD 149

[Close]

BLAST of Cp4.1LG15g02050 vs. ExPASy Swiss-Prot
Match: Q84W40 (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 7.1e-24
Identity = 58/132 (43.94%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 59  PPLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGL 118
           P + I++ +++  F  +GFFS+Y  RC ++ ++       + +GN L   A +     GL
Sbjct: 61  PTMAILMIVLVSVFFFLGFFSVYIRRC-LERVMGMDYGNPNDAGNWL---ATNRQQARGL 120

Query: 119 DPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWL 178
           D  +I TFPTF YS +K  R  K  LEC++CL EF+DD  LRL+  CCHVFH  CID WL
Sbjct: 121 DASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL 180

Query: 179 ESHKTCPARRKD 191
            SH TCP  R D
Sbjct: 181 RSHTTCPLCRAD 188

[Close]

BLAST of Cp4.1LG15g02050 vs. ExPASy Swiss-Prot
Match: Q9LQM2 (RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.1e-24
Identity = 64/155 (41.29%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 60  PLTIILTLILLAFLLVGFFSIYFCRCIMDSLLH--SRNLRRSPSGNILHPSADSPTVPPG 119
           P+TI+LT  LL  +  GFFS +FC C+   L+   + +  R+   N++ PS  +P    G
Sbjct: 73  PVTIVLTGSLLFIIFTGFFSFFFCGCLFRKLMRIWNNHRNRNRPSNLIQPS--NPPENLG 132

Query: 120 LDPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLW 179
           LD  +I +FP +PYS +K+  +D    +C+ICL EF DD  +RL++ C H FH  CIDLW
Sbjct: 133 LDSKIIESFPEYPYS-VKDHGTD----QCSICLTEFMDDDTIRLISTCNHSFHTICIDLW 192

Query: 180 LESHKTCPARRKD---DDRYKLRLPEHV-KIKIIR 209
            E HKTCP  R++   +DR  L  P  V +I ++R
Sbjct: 193 FEGHKTCPVCRRELDVEDRTSLEKPLEVPEIDLVR 220

[Close]

BLAST of Cp4.1LG15g02050 vs. NCBI nr
Match: XP_023554783.1 (RING-H2 finger protein ATL29 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453 bits (1166), Expect = 1.28e-158
Identity = 242/340 (71.18%), Postives = 242/340 (71.18%), Query Frame = 0


Query: 7   MSPLINSPPPPPSPPPPSPPSSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILT 66
           MSPLINSPPPPPSPPPPSPPSSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILT
Sbjct: 1   MSPLINSPPPPPSPPPPSPPSSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILT 60

Query: 67  LILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTF 126
           LILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTF
Sbjct: 61  LILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTF 120

Query: 127 PTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCP- 186
           PTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCP 
Sbjct: 121 PTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCPV 180

Query: 187 ------------------------------------------------------------ 246
                                                                       
Sbjct: 181 CRRNLDSDSARNSADKPPDSDDHDNPPRSTHHESIEDAISIDIDDDVDDDDNADADDDDD 240

Query: 247 -------------------------------------ARRKDDDRYKLRLPEHVKIKIIR 248
                                                ARRKDDDRYKLRLPEHVKIKIIR
Sbjct: 241 RRSGSNRGKQSIKTEEAEDDGIKKFSRCHSTGHSILKARRKDDDRYKLRLPEHVKIKIIR 300

[Close]

BLAST of Cp4.1LG15g02050 vs. NCBI nr
Match: XP_022963762.1 (RING-H2 finger protein ATL29 [Cucurbita moschata])

HSP 1 Score: 434 bits (1116), Expect = 6.21e-151
Identity = 237/346 (68.50%), Postives = 240/346 (69.36%), Query Frame = 0


Query: 7   MSPLINSPPPPPSPPPP------SPPSSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPP 66
           M+ LINSPPPPPSPPPP      SPPSSSSS FLLHVFFRPMSTDFSHSSFSPEEHSTPP
Sbjct: 1   MTSLINSPPPPPSPPPPPSPPPPSPPSSSSS-FLLHVFFRPMSTDFSHSSFSPEEHSTPP 60

Query: 67  LTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDP 126
           LTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDP
Sbjct: 61  LTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDP 120

Query: 127 LLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLES 186
           LLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLES
Sbjct: 121 LLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLES 180

Query: 187 HKTCP------------------------------------------------------- 246
           HKTCP                                                       
Sbjct: 181 HKTCPVCRRNLDSDSARNSADKPPDSDHDNPPRSTHHESIEDAISIDIDDDVDDDDNADA 240

Query: 247 -------------------------------------------ARRKDDDRYKLRLPEHV 248
                                                      ARR+DDDRYKLRLPEHV
Sbjct: 241 DDDNDDRRSGSNRGKQSIKTEEAEDDGAKKFSRCHSTGHSILKARREDDDRYKLRLPEHV 300

[Close]

BLAST of Cp4.1LG15g02050 vs. NCBI nr
Match: KAG6571655.1 (RING-H2 finger protein ATL29, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011384.1 RING-H2 finger protein ATL29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 431 bits (1109), Expect = 7.22e-150
Identity = 232/334 (69.46%), Postives = 234/334 (70.06%), Query Frame = 0


Query: 13  SPPPPPSPPPPSPPSSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILTLILLAF 72
           SPPPPPSPPPPSPPSSSSS FLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILTLILLAF
Sbjct: 13  SPPPPPSPPPPSPPSSSSS-FLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILTLILLAF 72

Query: 73  LLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYS 132
           LLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYS
Sbjct: 73  LLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYS 132

Query: 133 GIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCP------- 192
           GIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCP       
Sbjct: 133 GIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCPVCRRNLD 192

Query: 193 ------------------------------------------------------------ 248
                                                                       
Sbjct: 193 SDSARNSADKPPDSDHDNPPRSTHHESIEDAISIDIDDDVDDDDNADADDDNDNRRSGSN 252

[Close]

BLAST of Cp4.1LG15g02050 vs. NCBI nr
Match: XP_022967655.1 (LOW QUALITY PROTEIN: RING-H2 finger protein ATL29-like, partial [Cucurbita maxima])

HSP 1 Score: 408 bits (1048), Expect = 9.38e-141
Identity = 216/319 (67.71%), Postives = 219/319 (68.65%), Query Frame = 0


Query: 27  SSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCI 86
           S SSSSFLLHVFFRPMSTDF HSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCI
Sbjct: 16  SXSSSSFLLHVFFRPMSTDFPHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCI 75

Query: 87  MDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLEC 146
           MDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLEC
Sbjct: 76  MDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLEC 135

Query: 147 AICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCP--------------------- 206
           AICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCP                     
Sbjct: 136 AICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCPVCRRNLDSDSTRNSADKPPDS 195

Query: 207 ------------------------------------------------------------ 248
                                                                       
Sbjct: 196 DHDNPPRSTHHESIEDAISIDIDDDVDDDDNADADDDDDRRSGSNRGKQSIKIEEAEDDG 255

[Close]

BLAST of Cp4.1LG15g02050 vs. NCBI nr
Match: XP_038888539.1 (RING-H2 finger protein ATL29-like [Benincasa hispida])

HSP 1 Score: 372 bits (956), Expect = 1.16e-126
Identity = 200/324 (61.73%), Postives = 212/324 (65.43%), Query Frame = 0


Query: 27  SSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCI 86
           SSSSSSFLLHVFFRPMSTDFSH  FS  +H+TPPLTIILTLILLAFLLVGFFSIYFCRC+
Sbjct: 18  SSSSSSFLLHVFFRPMSTDFSHPPFSTHDHTTPPLTIILTLILLAFLLVGFFSIYFCRCV 77

Query: 87  MDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLEC 146
           MDSLLHSRNLRRSPSGN+LHPS+DSP  PPGLDPLLIN+FPTFPYSGIKEFRSDKFGLEC
Sbjct: 78  MDSLLHSRNLRRSPSGNLLHPSSDSPAPPPGLDPLLINSFPTFPYSGIKEFRSDKFGLEC 137

Query: 147 AICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCP--------------------- 206
           AICLLEFDDDSFLRLLT C HVFHQECIDLWLESHKTCP                     
Sbjct: 138 AICLLEFDDDSFLRLLTNCYHVFHQECIDLWLESHKTCPVCRRNLDADSPRDSSDKPLDP 197

Query: 207 ------------------------------------------------------------ 248
                                                                       
Sbjct: 198 NSNTDNPPRNAHHESIEDAISIDIDDDVDDDDDNADADDDHHPSGNLNKGKQSIRKTEED 257

[Close]

BLAST of Cp4.1LG15g02050 vs. ExPASy TrEMBL
Match: A0A6J1HG37 (RING-H2 finger protein ATL29 OS=Cucurbita moschata OX=3662 GN=LOC111463956 PE=4 SV=1)

HSP 1 Score: 434 bits (1116), Expect = 3.01e-151
Identity = 237/346 (68.50%), Postives = 240/346 (69.36%), Query Frame = 0


Query: 7   MSPLINSPPPPPSPPPP------SPPSSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPP 66
           M+ LINSPPPPPSPPPP      SPPSSSSS FLLHVFFRPMSTDFSHSSFSPEEHSTPP
Sbjct: 1   MTSLINSPPPPPSPPPPPSPPPPSPPSSSSS-FLLHVFFRPMSTDFSHSSFSPEEHSTPP 60

Query: 67  LTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDP 126
           LTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDP
Sbjct: 61  LTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDP 120

Query: 127 LLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLES 186
           LLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLES
Sbjct: 121 LLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLES 180

Query: 187 HKTCP------------------------------------------------------- 246
           HKTCP                                                       
Sbjct: 181 HKTCPVCRRNLDSDSARNSADKPPDSDHDNPPRSTHHESIEDAISIDIDDDVDDDDNADA 240

Query: 247 -------------------------------------------ARRKDDDRYKLRLPEHV 248
                                                      ARR+DDDRYKLRLPEHV
Sbjct: 241 DDDNDDRRSGSNRGKQSIKTEEAEDDGAKKFSRCHSTGHSILKARREDDDRYKLRLPEHV 300

[Close]

BLAST of Cp4.1LG15g02050 vs. ExPASy TrEMBL
Match: A0A6J1HV34 (LOW QUALITY PROTEIN: RING-H2 finger protein ATL29-like OS=Cucurbita maxima OX=3661 GN=LOC111467100 PE=4 SV=1)

HSP 1 Score: 408 bits (1048), Expect = 4.54e-141
Identity = 216/319 (67.71%), Postives = 219/319 (68.65%), Query Frame = 0


Query: 27  SSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCI 86
           S SSSSFLLHVFFRPMSTDF HSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCI
Sbjct: 16  SXSSSSFLLHVFFRPMSTDFPHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCI 75

Query: 87  MDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLEC 146
           MDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLEC
Sbjct: 76  MDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLEC 135

Query: 147 AICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCP--------------------- 206
           AICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCP                     
Sbjct: 136 AICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCPVCRRNLDSDSTRNSADKPPDS 195

Query: 207 ------------------------------------------------------------ 248
                                                                       
Sbjct: 196 DHDNPPRSTHHESIEDAISIDIDDDVDDDDNADADDDDDRRSGSNRGKQSIKIEEAEDDG 255

[Close]

BLAST of Cp4.1LG15g02050 vs. ExPASy TrEMBL
Match: A0A1S3CQ65 (RING-H2 finger protein ATL29-like OS=Cucumis melo OX=3656 GN=LOC103503555 PE=4 SV=1)

HSP 1 Score: 354 bits (908), Expect = 7.84e-119
Identity = 189/330 (57.27%), Postives = 205/330 (62.12%), Query Frame = 0


Query: 27  SSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCI 86
           SSS SS  LHVFFRPMSTDFS   F+  +HSTPPLTIILTLILLAFLL+GFFSIYFCRCI
Sbjct: 71  SSSCSSVPLHVFFRPMSTDFSRPPFATHDHSTPPLTIILTLILLAFLLIGFFSIYFCRCI 130

Query: 87  MDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLEC 146
           MDSLLHSRNLRRSPSGN+LHPS+D+P  PPGLDPLLIN+FPTFPYSGIKEFRSDKFGLEC
Sbjct: 131 MDSLLHSRNLRRSPSGNLLHPSSDAPAPPPGLDPLLINSFPTFPYSGIKEFRSDKFGLEC 190

Query: 147 AICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCPARRKD---------------- 206
           AICLLEFDDDSFLRLLT CCHVFHQECIDLWL+SHKTCP  R+D                
Sbjct: 191 AICLLEFDDDSFLRLLTNCCHVFHQECIDLWLDSHKTCPVCRRDLDSESPRDSTDKPLDP 250

Query: 207 ------------------------------------------------------------ 248
                                                                       
Sbjct: 251 DSNTDNPPRISHHESIEDAISIEIDDDVDDEDNGDADEDHRPSVCWERGKQTITKTEEEK 310

[Close]

BLAST of Cp4.1LG15g02050 vs. ExPASy TrEMBL
Match: A0A0A0LI09 (RING-H2 finger protein ATL29 OS=Cucumis sativus OX=3659 GN=Csa_3G901170 PE=4 SV=1)

HSP 1 Score: 349 bits (895), Expect = 9.12e-118
Identity = 187/326 (57.36%), Postives = 205/326 (62.88%), Query Frame = 0


Query: 27  SSSSSSFLLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCI 86
           SSSSSSF LHVFFRPMSTDFS   F   +HS+PPLTIILTLILLAFLL+GFFSIYFCRCI
Sbjct: 12  SSSSSSFPLHVFFRPMSTDFSRPPFPTNDHSSPPLTIILTLILLAFLLIGFFSIYFCRCI 71

Query: 87  MDSLLHSRNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLEC 146
           M+SLLHSRNLRRSPSGN+LHP++DSP   PGLDPLLIN+FPTFPYSGIKEFRSDK GLEC
Sbjct: 72  MESLLHSRNLRRSPSGNLLHPTSDSPAPHPGLDPLLINSFPTFPYSGIKEFRSDKIGLEC 131

Query: 147 AICLLEFDDDSFLRLLTVCCHVFHQECIDLWLESHKTCP--------------------- 206
           AICLLEFDDDSFLRLLT CCHVFHQECIDLWL+SHKTCP                     
Sbjct: 132 AICLLEFDDDSFLRLLTNCCHVFHQECIDLWLDSHKTCPVCRRDLDSVSPRDSSDKPIDP 191

Query: 207 ------------------------------------------------------------ 248
                                                                       
Sbjct: 192 DSNTDNPPRISHHESIEDAISIDIDDDIDDVIGDADEDHRPSVCSEKGKQGITKTEEEKE 251

[Close]

BLAST of Cp4.1LG15g02050 vs. ExPASy TrEMBL
Match: A0A6J1K7T3 (RING-H2 finger protein ATL29-like OS=Cucurbita maxima OX=3661 GN=LOC111491422 PE=4 SV=1)

HSP 1 Score: 306 bits (783), Expect = 5.54e-101
Identity = 161/305 (52.79%), Postives = 183/305 (60.00%), Query Frame = 0


Query: 34  LLHVFFRPMSTDFSHSSFSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHS 93
           LL V FRPMSTD +   F  ++H +PP+TI+LTLIL+AFL VGFFSIY CRC++DS LHS
Sbjct: 14  LLQVLFRPMSTDLTRIPFPAQDHGSPPVTIVLTLILVAFLFVGFFSIYCCRCVVDSFLHS 73

Query: 94  RNLRRSPSGNILHPSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEF 153
           RNLRRS SGN+LHPS DSP  P GLDPLLIN+FPTFPYS IKEFRSD  GLECAICL+EF
Sbjct: 74  RNLRRSTSGNLLHPSTDSPAAPTGLDPLLINSFPTFPYSKIKEFRSDNLGLECAICLIEF 133

Query: 154 DDDSFLRLLTVCCHVFHQECIDLWLESHKTCP---------------------------- 213
           +D+SFLRLLTVC HVFHQECIDLWLESHKTCP                            
Sbjct: 134 NDESFLRLLTVCYHVFHQECIDLWLESHKTCPVCRRNLDSDSRRNSADKTSDPPRTSRRE 193

Query: 214 ------------------------------------------------------------ 247
                                                                       
Sbjct: 194 SIEDAISIDIDEDNDANADSDADDDEGSCSNKGKQRIETEEMEKEESRKKFSRSHSTGYS 253

[Close]

BLAST of Cp4.1LG15g02050 vs. TAIR 10
Match: AT4G17920.1 (RING/U-box superfamily protein )

HSP 1 Score: 191.8 bits (486), Expect = 6.5e-49
Identity = 106/260 (40.77%), Postives = 136/260 (52.31%), Query Frame = 0


Query: 53  PEEH-STPPLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRR---SPSGNILHPS 112
           P++H  TPPLT+ILT+ILL F  +GFF++YFC+C +D+++ +  L     + S N L   
Sbjct: 14  PQQHYVTPPLTVILTVILLVFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQ-Q 73

Query: 113 ADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHV 172
            ++P V PGL+  +IN+FPTFPYS +K+ R +K+GLECAICLLEFD D  LRLLT C HV
Sbjct: 74  PEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHV 133

Query: 173 FHQECIDLWLESHKTCPARRKD-------------------------------------- 228
           FHQECIDLW ESH+TCP  R+D                                      
Sbjct: 134 FHQECIDLWFESHRTCPVCRRDLDPPPPPENTKPTVDEMIIDVIQETSDDEEDDHHRQQT 193

[Close]

BLAST of Cp4.1LG15g02050 vs. TAIR 10
Match: AT5G46650.1 (RING/U-box superfamily protein )

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-40
Identity = 100/267 (37.45%), Postives = 130/267 (48.69%), Query Frame = 0


Query: 51  FSPEEHSTPPLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRS---PSGNI-LH 110
           + P+ +S PPL IILT+ILL    +GFF+IYFC+C   +L  + N       P   I   
Sbjct: 15  YPPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQIQAQ 74

Query: 111 PSADSPTVPPGLDPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDS-FLRLLTVC 170
                P V PGL+P +I ++P FP+S +K+ R DK+GLECAICLLEF+++   LRLLT C
Sbjct: 75  QEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTC 134

Query: 171 CHVFHQECIDLWLESHKTCPARRK------------------------------------ 230
            HVFHQECID WLES+KTCP  R+                                    
Sbjct: 135 YHVFHQECIDQWLESNKTCPVCRRNLDPNAPENIKELIIEVIQENAHENRDQEQTSTSNE 194

Query: 231 --------------------------------------DDDRYKLRLPEHVKIKIIRGH- 237
                                                 ++DRY LRLP+HVKIK+ R H 
Sbjct: 195 VMLSRQSSGNNERKIETLPDKFSRSKTTGHSIVRNKPEEEDRYTLRLPDHVKIKVTRRHN 254

[Close]

BLAST of Cp4.1LG15g02050 vs. TAIR 10
Match: AT2G35420.1 (RING/U-box superfamily protein )

HSP 1 Score: 118.2 bits (295), Expect = 9.1e-27
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 60  PLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGLD 119
           P+T++LT +LL  +  GFFS++  + +++ L  + NL+R+P G+++H +  +P    GLD
Sbjct: 22  PVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVA--TPPENTGLD 81

Query: 120 PLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWLE 179
           P +I +FP F YS   +      G ECAICL EF D+  +RL+TVC H FH  CIDLW E
Sbjct: 82  PFIIRSFPVFHYSSATK---KNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFE 141

Query: 180 SHKTCPARRKDDD 193
            HKTCP  R + D
Sbjct: 142 LHKTCPVCRCELD 149

[Close]

BLAST of Cp4.1LG15g02050 vs. TAIR 10
Match: AT1G72200.1 (RING/U-box superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 5.0e-25
Identity = 58/132 (43.94%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 59  PPLTIILTLILLAFLLVGFFSIYFCRCIMDSLLHSRNLRRSPSGNILHPSADSPTVPPGL 118
           P + I++ +++  F  +GFFS+Y  RC ++ ++       + +GN L   A +     GL
Sbjct: 61  PTMAILMIVLVSVFFFLGFFSVYIRRC-LERVMGMDYGNPNDAGNWL---ATNRQQARGL 120

Query: 119 DPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLWL 178
           D  +I TFPTF YS +K  R  K  LEC++CL EF+DD  LRL+  CCHVFH  CID WL
Sbjct: 121 DASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWL 180

Query: 179 ESHKTCPARRKD 191
            SH TCP  R D
Sbjct: 181 RSHTTCPLCRAD 188

[Close]

BLAST of Cp4.1LG15g02050 vs. TAIR 10
Match: AT1G32361.1 (RING/U-box superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 5.0e-25
Identity = 64/155 (41.29%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 60  PLTIILTLILLAFLLVGFFSIYFCRCIMDSLLH--SRNLRRSPSGNILHPSADSPTVPPG 119
           P+TI+LT  LL  +  GFFS +FC C+   L+   + +  R+   N++ PS  +P    G
Sbjct: 73  PVTIVLTGSLLFIIFTGFFSFFFCGCLFRKLMRIWNNHRNRNRPSNLIQPS--NPPENLG 132

Query: 120 LDPLLINTFPTFPYSGIKEFRSDKFGLECAICLLEFDDDSFLRLLTVCCHVFHQECIDLW 179
           LD  +I +FP +PYS +K+  +D    +C+ICL EF DD  +RL++ C H FH  CIDLW
Sbjct: 133 LDSKIIESFPEYPYS-VKDHGTD----QCSICLTEFMDDDTIRLISTCNHSFHTICIDLW 192

Query: 180 LESHKTCPARRKD---DDRYKLRLPEHV-KIKIIR 209
            E HKTCP  R++   +DR  L  P  V +I ++R
Sbjct: 193 FEGHKTCPVCRRELDVEDRTSLEKPLEVPEIDLVR 220

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g02050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49691	9.2e-48	40.77	RING-H2 finger protein ATL29 OS=Arabidopsis thaliana OX=3702 GN=ATL29 PE=3 SV=1	[more]
Q9FIR0	2.0e-39	37.45	RING-H2 finger protein ATL30 OS=Arabidopsis thaliana OX=3702 GN=ATL30 PE=2 SV=1	[more]
Q6NKR1	1.3e-25	44.36	RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1	[more]
Q84W40	7.1e-24	43.94	RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2	[more]
Q9LQM2	7.1e-24	41.29	RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1	[more]

BLAST of Cp4.1LG15g02050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554783.1	1.28e-158	71.18	RING-H2 finger protein ATL29 [Cucurbita pepo subsp. pepo]	[more]
XP_022963762.1	6.21e-151	68.50	RING-H2 finger protein ATL29 [Cucurbita moschata]	[more]
KAG6571655.1	7.22e-150	69.46	RING-H2 finger protein ATL29, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022967655.1	9.38e-141	67.71	LOW QUALITY PROTEIN: RING-H2 finger protein ATL29-like, partial [Cucurbita maxim...	[more]
XP_038888539.1	1.16e-126	61.73	RING-H2 finger protein ATL29-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG15g02050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HG37	3.01e-151	68.50	RING-H2 finger protein ATL29 OS=Cucurbita moschata OX=3662 GN=LOC111463956 PE=4 ...	[more]
A0A6J1HV34	4.54e-141	67.71	LOW QUALITY PROTEIN: RING-H2 finger protein ATL29-like OS=Cucurbita maxima OX=36...	[more]
A0A1S3CQ65	7.84e-119	57.27	RING-H2 finger protein ATL29-like OS=Cucumis melo OX=3656 GN=LOC103503555 PE=4 S...	[more]
A0A0A0LI09	9.12e-118	57.36	RING-H2 finger protein ATL29 OS=Cucumis sativus OX=3659 GN=Csa_3G901170 PE=4 SV=...	[more]
A0A6J1K7T3	5.54e-101	52.79	RING-H2 finger protein ATL29-like OS=Cucurbita maxima OX=3661 GN=LOC111491422 PE...	[more]

BLAST of Cp4.1LG15g02050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17920.1	6.5e-49	40.77	RING/U-box superfamily protein	[more]
AT5G46650.1	1.5e-40	37.45	RING/U-box superfamily protein	[more]
AT2G35420.1	9.1e-27	44.36	RING/U-box superfamily protein	[more]
AT1G72200.1	5.0e-25	43.94	RING/U-box superfamily protein	[more]
AT1G32361.1	5.0e-25	41.29	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 145..186 e-value: 8.9E-12 score: 45.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 146..188 score: 10.940213
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 110..192 e-value: 1.5E-15 score: 58.6
None	No IPR available	PANTHER	PTHR14155:SF521	RING-H2 FINGER PROTEIN ATL29	coord: 47..190
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 47..190
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 135..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g02050.1	Cp4.1LG15g02050.1	mRNA